The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017353	Staphylococcus lugdunensis N920143, complete genome	2595888	887580	929038	2595888	holin,head,plate,portal,capsid,tail,terminase	Staphylococcus_phage(76.36%)	60	NA	NA
WP_014533238.1|887580_888963_-	recombinase family protein	NA	A0A2H4JD28	uncultured_Caudovirales_phage	63.1	8.4e-165
WP_014533239.1|889020_889569_-	hypothetical protein	NA	A0A1W6JQH1	Staphylococcus_phage	77.8	1.9e-27
WP_014533240.1|889590_890100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014533241.1|890112_890577_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A141VTQ3	Staphylococcus_phage	62.3	2.0e-49
WP_014533242.1|890591_890915_-	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	85.0	2.7e-42
WP_044019727.1|891080_891329_+	helix-turn-helix transcriptional regulator	NA	A0A141VTQ5	Staphylococcus_phage	80.0	4.5e-29
WP_014533244.1|891343_892225_+	DUF3102 domain-containing protein	NA	A0A2H4J4L1	uncultured_Caudovirales_phage	72.1	1.2e-71
WP_014533245.1|892237_892732_+	ORF6C domain-containing protein	NA	A0A2H4J854	uncultured_Caudovirales_phage	62.3	5.0e-35
WP_014533246.1|892770_892932_+	hypothetical protein	NA	A0A1J0MF99	Staphylococcus_phage	77.4	2.0e-14
WP_014533247.1|892937_893201_-	CRISPR-associated protein Cas2	NA	A0A1J0MFM9	Staphylococcus_phage	89.7	4.6e-40
WP_014533248.1|893258_894014_+	phage antirepressor KilAC domain-containing protein	NA	A0A0H4J326	Staphylococcus_phage	95.2	8.5e-135
WP_002478861.1|894029_894173_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.6e-16
WP_014533249.1|894182_894785_-	hypothetical protein	NA	B7T096	Staphylococcus_virus	92.9	7.3e-97
WP_002478864.1|895012_895192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478865.1|895260_895746_+	siphovirus Gp157 family protein	NA	H9A0R4	Staphylococcus_phage	76.4	1.8e-61
WP_002478866.1|895746_896421_+	ERF family protein	NA	I6T7Q2	Staphylococcus_virus	91.0	7.1e-109
WP_014533250.1|896417_896834_+	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	83.2	6.9e-46
WP_014533251.1|896848_897526_+	hypothetical protein	NA	A0A141VTR7	Staphylococcus_phage	86.4	6.2e-113
WP_014533252.1|897515_898319_+	conserved phage C-terminal domain-containing protein	NA	A0A1W6JNM1	Staphylococcus_phage	81.7	3.6e-107
WP_014533253.1|898331_899117_+	ATP-binding protein	NA	A0A1W6JPS4	Staphylococcus_phage	96.9	1.1e-142
WP_014533254.1|899113_899278_+	hypothetical protein	NA	A0A1W6JNE8	Staphylococcus_phage	79.2	2.9e-16
WP_014533255.1|899267_899510_+	hypothetical protein	NA	A0A1W6JNF3	Staphylococcus_phage	76.2	3.8e-28
WP_002478873.1|899518_899926_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0N9SH85	Staphylococcus_phage	73.3	3.9e-54
WP_014533256.1|899922_900237_+	hypothetical protein	NA	A0A2H4JG42	uncultured_Caudovirales_phage	83.0	4.3e-16
WP_014533259.1|900760_901132_+	hypothetical protein	NA	H9A0S5	Staphylococcus_phage	50.0	4.9e-19
WP_002478878.1|901132_901414_+	DUF1024 family protein	NA	A0A2H4J2P4	uncultured_Caudovirales_phage	65.9	2.0e-25
WP_002478879.1|901403_901565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478880.1|901565_901991_+	dUTP diphosphatase	NA	A0A2H4J7M9	uncultured_Caudovirales_phage	95.0	5.3e-70
WP_002478881.1|902027_902180_+	DUF1381 domain-containing protein	NA	NA	NA	NA	NA
WP_002478882.1|902169_902337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014533260.1|902333_902477_+	hypothetical protein	NA	A0A141VTT7	Staphylococcus_phage	76.1	3.5e-10
WP_014533261.1|902480_902882_+	hypothetical protein	NA	H9A0U2	Staphylococcus_phage	91.7	1.6e-63
WP_044019728.1|903102_903531_+	hypothetical protein	NA	A1EAE0	Streptococcus_phage	46.1	7.6e-24
WP_014533263.1|903517_904798_+|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	85.4	3.6e-218
WP_002478887.1|904809_906339_+|portal	phage portal protein	portal	A0A1W6JNP8	Staphylococcus_phage	82.4	9.1e-245
WP_014533264.1|906345_907296_+|capsid	minor capsid protein	capsid	A0A1W6JNS6	Staphylococcus_phage	79.7	1.7e-145
WP_014533265.1|907292_907445_+	hypothetical protein	NA	A0A1W6JNP6	Staphylococcus_phage	70.8	2.4e-09
WP_173362267.1|907431_907581_+	hypothetical protein	NA	A0A1W6JNR0	Staphylococcus_phage	74.0	1.7e-10
WP_014533266.1|907825_908434_+	DUF4355 domain-containing protein	NA	A0A1W6JNT6	Staphylococcus_phage	54.0	1.7e-16
WP_002478891.1|908451_909372_+|capsid	phage major capsid protein	capsid	A0A1W6JNT3	Staphylococcus_phage	89.5	5.8e-154
WP_002478892.1|909393_909663_+	hypothetical protein	NA	A0A1W6JNX0	Staphylococcus_phage	80.9	2.3e-34
WP_002478893.1|909664_909994_+|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	80.7	6.6e-44
WP_014533267.1|909990_910293_+	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	84.0	2.1e-44
WP_014533268.1|910294_910642_+	HK97 gp10 family phage protein	NA	A0A1W6JNQ6	Staphylococcus_phage	80.0	4.7e-48
WP_002478896.1|910653_911043_+	hypothetical protein	NA	A0A1W6JNQ3	Staphylococcus_phage	80.6	7.1e-53
WP_002478897.1|911090_911645_+|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNU0	Staphylococcus_phage	94.0	1.5e-88
WP_002478898.1|911705_912065_+	hypothetical protein	NA	A0A1W6JNQ1	Staphylococcus_phage	91.6	8.3e-56
WP_002478899.1|912109_912454_+	hypothetical protein	NA	A0A1W6JNR9	Staphylococcus_phage	95.6	3.9e-55
WP_014533269.1|912468_916002_+|tail	tail protein	tail	H9A0P1	Staphylococcus_phage	58.2	6.5e-129
WP_002478901.1|916013_916973_+|tail	phage tail family protein	tail	A0A1W6JNU3	Staphylococcus_phage	90.3	2.3e-169
WP_002478902.1|916983_918219_+|tail	phage tail protein	tail	A0A1W6JNY1	Staphylococcus_phage	88.5	2.6e-213
WP_014533270.1|918219_920094_+	DUF2817 domain-containing protein	NA	A0A1W6JNS8	Staphylococcus_phage	89.4	0.0e+00
WP_014533271.1|920107_921265_+|plate	BppU family phage baseplate upper protein	plate	A0A1W6JNR8	Staphylococcus_phage	72.5	6.8e-160
WP_014533272.1|921280_921703_+	hypothetical protein	NA	A0A1W6JNR2	Staphylococcus_phage	66.2	2.3e-49
WP_014533273.1|921683_922082_+	hypothetical protein	NA	A0A2H4J9S2	uncultured_Caudovirales_phage	53.0	4.6e-31
WP_014533274.1|922133_924023_+	glucosaminidase domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	81.9	2.0e-262
WP_014533275.1|924076_926830_+|plate	BppU family phage baseplate upper protein	plate	Q4ZC48	Staphylococcus_virus	53.0	6.9e-219
WP_002478910.1|926886_927159_+|holin	phage holin	holin	A0A2H4JHI3	uncultured_Caudovirales_phage	85.6	2.0e-38
WP_014533276.1|927158_928568_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4J4H5	uncultured_Caudovirales_phage	84.2	9.9e-238
WP_014533277.1|928762_929038_+	hypothetical protein	NA	C8CH39	Staphylococcus_phage	48.1	1.3e-05
>prophage 2
NC_017353	Staphylococcus lugdunensis N920143, complete genome	2595888	1201290	1231545	2595888	tRNA	Staphylococcus_phage(96.15%)	31	NA	NA
WP_002458784.1|1201290_1202685_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.3	1.5e-169
WP_002477998.1|1202691_1203696_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.7	2.3e-95
WP_002458786.1|1203692_1203950_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	70.4	1.2e-29
WP_002458787.1|1204016_1204490_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	60.6	2.6e-49
WP_002477999.1|1204470_1205244_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	6.5e-98
WP_002458789.1|1205307_1206900_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	86.0	1.1e-274
WP_002458790.1|1207271_1208468_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.4	1.7e-198
WP_002458791.1|1208566_1209475_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.6	1.3e-102
WP_002478000.1|1209589_1210423_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	1.4e-119
WP_002478001.1|1210607_1210961_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_002478002.1|1210957_1211323_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.0	2.0e-33
WP_002478003.1|1211391_1211697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002478004.1|1211953_1212667_+	transaldolase	NA	M1PR54	Cyanophage	36.3	1.1e-19
WP_002458797.1|1212797_1213250_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.6	1.6e-16
WP_002458798.1|1213230_1213677_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002478005.1|1213692_1214163_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	45.5	1.6e-27
WP_002458800.1|1214360_1214585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002458801.1|1214786_1215641_+	glucosaminidase domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	42.1	7.5e-39
WP_002478006.1|1216024_1217524_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	77.2	9.9e-18
WP_002478007.1|1217835_1218942_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.9	4.4e-124
WP_002458804.1|1218949_1219582_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	70.5	2.3e-77
WP_002478008.1|1219594_1220776_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	2.9e-174
WP_002458806.1|1220788_1221247_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.9	8.6e-58
WP_002478009.1|1221324_1222311_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	72.6	2.7e-133
WP_002458809.1|1223855_1224257_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002458810.1|1224307_1224871_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	67.4	3.5e-69
WP_002458811.1|1224867_1225821_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	86.1	3.2e-70
WP_002478010.1|1225924_1227100_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	78.8	1.8e-176
WP_014533288.1|1227421_1229836_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.0	0.0e+00
WP_002458814.1|1229854_1230166_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.0	6.5e-33
WP_002478012.1|1230285_1231545_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	83.5	3.7e-42
>prophage 3
NC_017353	Staphylococcus lugdunensis N920143, complete genome	2595888	1348325	1357344	2595888	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002478078.1|1348325_1349330_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	3.8e-05
WP_002478079.1|1349332_1350358_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002478080.1|1350376_1351516_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	4.2e-85
WP_002458927.1|1351534_1351795_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.3	2.8e-05
WP_002478081.1|1351980_1354269_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.4	2.8e-32
WP_002478082.1|1354529_1356806_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	8.7e-66
WP_002458930.1|1356825_1357344_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	1.4e-27
>prophage 4
NC_017353	Staphylococcus lugdunensis N920143, complete genome	2595888	1483022	1491719	2595888		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_002459061.1|1483022_1483754_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.0	1.1e-06
WP_012990840.1|1483746_1484280_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.1	3.5e-10
WP_002478163.1|1484282_1485020_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002459064.1|1485169_1485895_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.5	3.4e-48
WP_002478164.1|1485878_1487627_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	31.6	1.5e-20
WP_002478165.1|1488350_1488893_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002449743.1|1489034_1489283_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
WP_002459068.1|1489393_1490353_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002459069.1|1490339_1491719_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.2	1.6e-51
>prophage 5
NC_017353	Staphylococcus lugdunensis N920143, complete genome	2595888	1896184	1904654	2595888		Synechococcus_phage(33.33%)	9	NA	NA
WP_002478377.1|1896184_1896751_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	3.4e-27
WP_002478378.1|1896750_1897782_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	8.7e-66
WP_002459448.1|1897774_1899259_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.8	3.2e-45
WP_002478379.1|1899237_1901427_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	37.7	1.0e-135
WP_002478380.1|1901419_1902091_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002459451.1|1902092_1902353_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002478381.1|1902352_1903057_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	4.0e-46
WP_002478382.1|1903057_1904185_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002478383.1|1904171_1904654_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	6.8e-21
>prophage 6
NC_017353	Staphylococcus lugdunensis N920143, complete genome	2595888	2185982	2203835	2595888		uncultured_Caudovirales_phage(58.33%)	15	NA	NA
WP_014533350.1|2185982_2186942_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	4.2e-06
WP_002492143.1|2186922_2187900_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.3	5.8e-136
WP_002459737.1|2188459_2189494_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002459738.1|2189610_2190393_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.2	1.5e-14
WP_002479353.1|2190389_2191349_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	4.1e-09
WP_002459740.1|2191329_2192307_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.4	4.4e-144
WP_002459741.1|2192675_2193644_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	5.7e-176
WP_002459742.1|2193883_2195989_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_002459743.1|2195951_2196350_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	4.3e-53
WP_014533353.1|2197223_2198093_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002479355.1|2198105_2198606_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
WP_037553882.1|2198890_2200396_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.9	1.2e-60
WP_002479357.1|2200723_2201638_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_002479359.1|2202011_2202542_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	1.3e-28
WP_002459751.1|2202779_2203835_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.7	3.0e-21
>prophage 7
NC_017353	Staphylococcus lugdunensis N920143, complete genome	2595888	2218356	2224977	2595888		Pandoravirus(16.67%)	8	NA	NA
WP_002459762.1|2218356_2219508_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.1	6.0e-23
WP_002479366.1|2219491_2220088_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	1.4e-39
WP_002459764.1|2220423_2221095_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.9e-68
WP_002459765.1|2221096_2221516_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002459766.1|2221515_2222232_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	40.7	1.8e-49
WP_002459767.1|2222330_2222921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002479367.1|2222961_2223984_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	41.9	4.2e-60
WP_002479368.1|2224140_2224977_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	44.4	9.6e-63
