assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	1	63455-63777	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Type III-D,Type III-B,Type III-A,Type III-C	AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC,AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC,AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	36,36,36	0	0	NA	NA	NA:NA:NA	3,4,4	4	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA,NA|118aa|down_0|NC_017353.1_63970_64324_+,NA|109aa|down_7|NC_017353.1_79174_79501_+,NA|96aa|down_8|NC_017353.1_79503_79791_+	cas1|302aa|up_9|NC_017353.1_54714_55620_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_8|NC_017353.1_55619_55925_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|up_7|NC_017353.1_55940_58214_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|up_6|NC_017353.1_58215_58641_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|215aa|up_5|NC_017353.1_58642_59287_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_4|NC_017353.1_59297_60206_+	TIGR01903, Hypothetical_protein	csm5gr7|337aa|up_3|NC_017353.1_60209_61220_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|323aa|up_2|NC_017353.1_61233_62202_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm6|113aa|up_1|NC_017353.1_62180_62519_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|251aa|up_0|NC_017353.1_62515_63268_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|118aa|down_0|NC_017353.1_63970_64324_+	NA	NA|209aa|down_1|NC_017353.1_64676_65303_-	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|2394aa|down_2|NC_017353.1_65299_72481_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|262aa|down_3|NC_017353.1_73925_74711_+	pfam04507, DUF576, Csa1 family	NA|271aa|down_4|NC_017353.1_76021_76834_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_5|NC_017353.1_77067_77853_+	pfam04507, DUF576, Csa1 family	NA|442aa|down_6|NC_017353.1_77849_79175_+	cd00519, Lipase_3, Lipase (class 3)	NA|109aa|down_7|NC_017353.1_79174_79501_+	NA	NA|96aa|down_8|NC_017353.1_79503_79791_+	NA	NA|321aa|down_9|NC_017353.1_80208_81171_-	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	2	395626-395709	2	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Orphan	AACCCCAACTTGCTTTGCTTGGCGAA	26	1	5	395652-395683|395652-395683|395652-395683|395652-395683|395652-395683	NC_017353.1_253766-253735|NC_017353.1_253823-253792|NC_017353.1_467528-467497|NC_017353.1_1583243-1583274|NC_017353.1_2464269-2464238	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA,NA	NA|260aa|up_9|NC_017353.1_384305_385085_+	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase	NA|204aa|up_8|NC_017353.1_385105_385717_+	PRK06718, PRK06718, NAD(P)-binding protein	NA|300aa|up_7|NC_017353.1_385734_386634_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|393aa|up_6|NC_017353.1_386656_387835_+	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|200aa|up_5|NC_017353.1_387851_388451_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|407aa|up_4|NC_017353.1_388755_389976_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|257aa|up_3|NC_017353.1_390364_391135_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|616aa|up_2|NC_017353.1_391333_393181_+	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|179aa|up_1|NC_017353.1_393182_393719_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|431aa|up_0|NC_017353.1_394075_395368_+	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed	NA|542aa|down_0|NC_017353.1_396290_397916_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|187aa|down_1|NC_017353.1_397968_398529_-	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|497aa|down_2|NC_017353.1_398896_400387_+	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like	NA|569aa|down_3|NC_017353.1_400478_402185_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|393aa|down_4|NC_017353.1_402432_403611_+	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|90aa|down_5|NC_017353.1_403749_404019_+	pfam06855, YozE_SAM_like, YozE SAM-like fold	NA|150aa|down_6|NC_017353.1_404008_404458_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|531aa|down_7|NC_017353.1_405094_406687_+	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|875aa|down_8|NC_017353.1_406935_409560_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|272aa|down_9|NC_017353.1_409564_410380_+	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	3	577536-577617	3	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Orphan	GCAAGTTGGGGTGGGGCCCCAACAAA	26	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA|64aa|up_8|NC_017353.1_566569_566761_+,NA|508aa|down_5|NC_017353.1_583407_584931_+	NA|451aa|up_9|NC_017353.1_565033_566386_+	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|64aa|up_8|NC_017353.1_566569_566761_+	NA	NA|89aa|up_7|NC_017353.1_566915_567182_-	pfam07205, DUF1413, Domain of unknown function (DUF1413)	NA|232aa|up_6|NC_017353.1_567336_568032_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|412aa|up_5|NC_017353.1_568231_569467_+	PRK08596, PRK08596, acetylornithine deacetylase; Validated	NA|722aa|up_4|NC_017353.1_569907_572073_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|513aa|up_3|NC_017353.1_572165_573704_-	TIGR03706, exo_poly_only, exopolyphosphatase	NA|516aa|up_2|NC_017353.1_574013_575561_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|359aa|up_1|NC_017353.1_575795_576872_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|152aa|up_0|NC_017353.1_577037_577493_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|427aa|down_0|NC_017353.1_577863_579144_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|277aa|down_1|NC_017353.1_579673_580504_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|269aa|down_2|NC_017353.1_580500_581307_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|258aa|down_3|NC_017353.1_581308_582082_-	TIGR02315, Phosphonates_import_ATP-binding_protein_PhnC, phosphonate ABC transporter, ATP-binding protein	NA|318aa|down_4|NC_017353.1_582207_583161_-	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|508aa|down_5|NC_017353.1_583407_584931_+	NA	NA|513aa|down_6|NC_017353.1_584947_586486_+	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|526aa|down_7|NC_017353.1_586737_588315_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|255aa|down_8|NC_017353.1_588630_589395_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]	NA|260aa|down_9|NC_017353.1_589417_590197_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	4	609844-609924	4	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Orphan	ACGGATAACGCAAGCTGGGGTGG	23	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA|122aa|up_7|NC_017353.1_604015_604381_+,NA|315aa|down_9|NC_017353.1_622031_622976_+	NA|227aa|up_9|NC_017353.1_602737_603418_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|91aa|up_8|NC_017353.1_603727_604000_+	TIGR04197, conserved_hypothetical_protein, type VII secretion effector, SACOL2603 family	NA|122aa|up_7|NC_017353.1_604015_604381_+	NA	NA|486aa|up_6|NC_017353.1_604370_605828_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|209aa|up_5|NC_017353.1_605830_606457_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|212aa|up_4|NC_017353.1_606527_607163_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|104aa|up_3|NC_017353.1_607159_607471_+	COG4495, COG4495, Uncharacterized protein conserved in bacteria [Function unknown]	NA|214aa|up_2|NC_017353.1_607604_608246_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|234aa|up_1|NC_017353.1_608517_609219_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|154aa|up_0|NC_017353.1_609218_609680_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|254aa|down_0|NC_017353.1_610190_610952_-	PRK14084, PRK14084, DNA-binding response regulator	NA|585aa|down_1|NC_017353.1_610952_612707_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|465aa|down_2|NC_017353.1_613014_614409_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|311aa|down_3|NC_017353.1_614591_615524_+	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|89aa|down_4|NC_017353.1_615705_615972_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|284aa|down_5|NC_017353.1_616175_617027_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|274aa|down_6|NC_017353.1_617090_617912_-	PRK01622, PRK01622, membrane protein insertase YidC	NA|504aa|down_7|NC_017353.1_618023_619535_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|609aa|down_8|NC_017353.1_619816_621643_+	pfam13520, AA_permease_2, Amino acid permease	NA|315aa|down_9|NC_017353.1_622031_622976_+	NA
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	5	698066-698214	2	PILER-CR	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Orphan	TTTGTTGGGGCCCCACCCCAACTTGCTTTGTCCGTTGCCTTTCTTTTG	48	1	4	698123-698139|698123-698139|698123-698139|698123-698139	NC_017353.1_1015352-1015368|NC_017353.1_2497619-2497635|NC_017353.1_2497676-2497692|NC_017353.1_2232446-2232430	NA	2	2	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA,NA|126aa|down_2|NC_017353.1_701224_701602_-,NA|71aa|down_3|NC_017353.1_701619_701832_-,NA|262aa|down_9|NC_017353.1_708228_709014_-	NA|151aa|up_9|NC_017353.1_686345_686798_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|572aa|up_8|NC_017353.1_686810_688526_-	PRK13207, ureC, urease subunit alpha; Reviewed	NA|136aa|up_7|NC_017353.1_688525_688933_-	PRK13201, ureB, urease subunit beta; Reviewed	NA|101aa|up_6|NC_017353.1_688945_689248_-	PRK13241, ureA, urease subunit gamma; Provisional	NA|299aa|up_5|NC_017353.1_689456_690353_+	TIGR03441, urea_trans_yut, urea transporter, Yersinia type	NA|196aa|up_4|NC_017353.1_690572_691160_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|592aa|up_3|NC_017353.1_691363_693139_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|579aa|up_2|NC_017353.1_693856_695593_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|302aa|up_1|NC_017353.1_696147_697053_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|215aa|up_0|NC_017353.1_697283_697928_+	TIGR01218, conserved_hypothetical_protein, tandem five-transmembrane protein	NA|211aa|down_0|NC_017353.1_698450_699083_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|538aa|down_1|NC_017353.1_699410_701024_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|126aa|down_2|NC_017353.1_701224_701602_-	NA	NA|71aa|down_3|NC_017353.1_701619_701832_-	NA	NA|212aa|down_4|NC_017353.1_702809_703445_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|382aa|down_5|NC_017353.1_703652_704798_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|284aa|down_6|NC_017353.1_704940_705792_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|177aa|down_7|NC_017353.1_705835_706366_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|204aa|down_8|NC_017353.1_706792_707404_-	pfam01381, HTH_3, Helix-turn-helix	NA|262aa|down_9|NC_017353.1_708228_709014_-	NA
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	6	750787-750873	5	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Orphan	GCAAGTTGGGGTGGGGCCCCAACACAAAGA	30	1	3	750817-750843|750817-750843|750817-750843	NC_017353.1_178741-178767|NC_017353.1_793638-793664|NC_017353.1_793695-793721	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA,NA|130aa|down_2|NC_017353.1_752935_753325_-	NA|225aa|up_9|NC_017353.1_740004_740679_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|354aa|up_8|NC_017353.1_740806_741868_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|223aa|up_7|NC_017353.1_741864_742533_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|318aa|up_6|NC_017353.1_742623_743577_-	cd06259, YdcF-like, YdcF-like	NA|154aa|up_5|NC_017353.1_743752_744214_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|458aa|up_4|NC_017353.1_744311_745685_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|402aa|up_3|NC_017353.1_745786_746992_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|184aa|up_2|NC_017353.1_747433_747985_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_1|NC_017353.1_748117_748765_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|655aa|up_0|NC_017353.1_748777_750742_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|236aa|down_0|NC_017353.1_751078_751786_-	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|303aa|down_1|NC_017353.1_751994_752903_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|130aa|down_2|NC_017353.1_752935_753325_-	NA	NA|156aa|down_3|NC_017353.1_753330_753798_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|316aa|down_4|NC_017353.1_753916_754864_+	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family	NA|351aa|down_5|NC_017353.1_754909_755962_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|203aa|down_6|NC_017353.1_756086_756695_-	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	NA|65aa|down_7|NC_017353.1_756953_757148_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|337aa|down_8|NC_017353.1_757702_758713_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|218aa|down_9|NC_017353.1_758788_759442_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	7	786743-786822	6	CRISPRCasFinder	no	WYL	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Unclear	TCGATCAAAGCAAGTTGGGGTGG	23	1	5	786766-786799|786766-786799|786766-786799|786766-786799|786766-786799	NC_017353.1_2178580-2178613|NC_017353.1_43077-43044|NC_017353.1_1103821-1103788|NC_017353.1_1263074-1263107|NC_017353.1_1852104-1852137	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA|78aa|up_1|NC_017353.1_785343_785577_+,NA	NA|463aa|up_9|NC_017353.1_775007_776396_-	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed	NA|296aa|up_8|NC_017353.1_776409_777297_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|350aa|up_7|NC_017353.1_777293_778343_-	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	WYL|230aa|up_6|NC_017353.1_778511_779201_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|259aa|up_5|NC_017353.1_779591_780368_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|317aa|up_4|NC_017353.1_780486_781437_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|985aa|up_3|NC_017353.1_781736_784691_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|157aa|up_2|NC_017353.1_784690_785161_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|78aa|up_1|NC_017353.1_785343_785577_+	NA	NA|258aa|up_0|NC_017353.1_785596_786370_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|318aa|down_0|NC_017353.1_787094_788048_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|105aa|down_1|NC_017353.1_788116_788431_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|111aa|down_2|NC_017353.1_788430_788763_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|179aa|down_3|NC_017353.1_789175_789712_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|141aa|down_4|NC_017353.1_790010_790433_-	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|358aa|down_5|NC_017353.1_790664_791738_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|464aa|down_6|NC_017353.1_791780_793172_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|246aa|down_7|NC_017353.1_793882_794620_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|659aa|down_8|NC_017353.1_795189_797166_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|247aa|down_9|NC_017353.1_797202_797943_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	8	1307010-1307100	7	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Orphan	AAACTCGTCATGCTCGTTAAGTGC	24	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA,NA	NA|410aa|up_9|NC_017353.1_1293241_1294471_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|up_8|NC_017353.1_1294559_1295417_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|up_7|NC_017353.1_1295418_1296363_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|up_6|NC_017353.1_1296525_1297494_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|587aa|up_5|NC_017353.1_1297511_1299272_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|453aa|up_4|NC_017353.1_1299825_1301184_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|373aa|up_3|NC_017353.1_1301525_1302644_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|up_2|NC_017353.1_1302691_1303960_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|237aa|up_1|NC_017353.1_1304163_1304874_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|570aa|up_0|NC_017353.1_1304873_1306583_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|878aa|down_0|NC_017353.1_1307147_1309781_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|291aa|down_1|NC_017353.1_1309797_1310670_+	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|202aa|down_2|NC_017353.1_1310685_1311291_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|334aa|down_3|NC_017353.1_1311437_1312439_+	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated	NA|336aa|down_4|NC_017353.1_1312613_1313621_+	PRK06256, PRK06256, biotin synthase; Validated	NA|157aa|down_5|NC_017353.1_1313937_1314408_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|459aa|down_6|NC_017353.1_1314408_1315785_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|307aa|down_7|NC_017353.1_1315784_1316705_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|646aa|down_8|NC_017353.1_1317064_1319002_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|498aa|down_9|NC_017353.1_1319465_1320959_+	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	9	1871267-1871353	8	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Orphan	TGTTGGGGCCCCACCCCAACTCGCGTTGTT	30	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA,NA	NA|272aa|up_9|NC_017353.1_1861487_1862303_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|204aa|up_8|NC_017353.1_1862485_1863097_+	pfam06335, DUF1054, Protein of unknown function (DUF1054)	NA|451aa|up_7|NC_017353.1_1863358_1864711_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|152aa|up_6|NC_017353.1_1864973_1865429_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|349aa|up_5|NC_017353.1_1865560_1866607_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|358aa|up_4|NC_017353.1_1866679_1867753_-	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold	NA|271aa|up_3|NC_017353.1_1867749_1868562_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|266aa|up_2|NC_017353.1_1868567_1869365_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|365aa|up_1|NC_017353.1_1869357_1870452_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|180aa|up_0|NC_017353.1_1870466_1871006_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|96aa|down_0|NC_017353.1_1871391_1871679_-	PRK04387, PRK04387, hypothetical protein; Provisional	NA|469aa|down_1|NC_017353.1_1871882_1873289_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|435aa|down_2|NC_017353.1_1873292_1874597_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|326aa|down_3|NC_017353.1_1874809_1875787_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|371aa|down_4|NC_017353.1_1875790_1876903_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|210aa|down_5|NC_017353.1_1877069_1877699_-	pfam10368, YkyA, Putative cell-wall binding lipoprotein	NA|184aa|down_6|NC_017353.1_1877836_1878388_+	PRK00150, def, peptide deformylase; Reviewed	NA|73aa|down_7|NC_017353.1_1878822_1879041_+	PRK13667, PRK13667, hypothetical protein; Provisional	NA|560aa|down_8|NC_017353.1_1879040_1880720_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|220aa|down_9|NC_017353.1_1881314_1881974_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	10	1964069-1964163	9	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Orphan	TTCCCCAGCTTGCACATTTCTGTTGAATTTCTTAC	35	0	0	NA	NA	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA|116aa|up_3|NC_017353.1_1961432_1961780_-,NA	NA|362aa|up_9|NC_017353.1_1953375_1954461_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|257aa|up_8|NC_017353.1_1954779_1955550_-	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI	NA|615aa|up_7|NC_017353.1_1955837_1957682_-	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	NA|285aa|up_6|NC_017353.1_1959105_1959960_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|270aa|up_5|NC_017353.1_1959956_1960766_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|212aa|up_4|NC_017353.1_1960780_1961416_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|116aa|up_3|NC_017353.1_1961432_1961780_-	NA	NA|191aa|up_2|NC_017353.1_1961973_1962546_+	COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_1|NC_017353.1_1962645_1963011_+	COG2346, COG2346, Truncated hemoglobins [General function prediction only]	NA|266aa|up_0|NC_017353.1_1963033_1963831_+	pfam13743, Thioredoxin_5, Thioredoxin	NA|603aa|down_0|NC_017353.1_1964477_1966286_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|324aa|down_1|NC_017353.1_1966337_1967309_-	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|244aa|down_2|NC_017353.1_1967409_1968141_-	PRK02315, PRK02315, adaptor protein MecA	NA|132aa|down_3|NC_017353.1_1968361_1968757_-	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|330aa|down_4|NC_017353.1_1969044_1970034_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|252aa|down_5|NC_017353.1_1970220_1970976_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|551aa|down_6|NC_017353.1_1971184_1972837_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|314aa|down_7|NC_017353.1_1972862_1973804_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|361aa|down_8|NC_017353.1_1973793_1974876_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|355aa|down_9|NC_017353.1_1974890_1975955_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_000270465.1_ASM27046v1	NC_017353	Staphylococcus lugdunensis N920143, complete genome	11	2201778-2201857	10	CRISPRCasFinder	no		cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	Orphan	CCAAGCAAAGCAAGTTGGGGTGG	23	1	4	2201801-2201834|2201801-2201834|2201801-2201834|2201801-2201834	NC_017353.1_43077-43044|NC_017353.1_1263074-1263107|NC_017353.1_1085333-1085366|NC_017353.1_1103821-1103788	NA	1	1	Orphan	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,csa3,WYL,DEDDh,DinG,cas3	NA,NA	NA|261aa|up_9|NC_017353.1_2189610_2190393_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|320aa|up_8|NC_017353.1_2190389_2191349_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|326aa|up_7|NC_017353.1_2191329_2192307_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|323aa|up_6|NC_017353.1_2192675_2193644_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|702aa|up_5|NC_017353.1_2193883_2195989_-	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|133aa|up_4|NC_017353.1_2195951_2196350_-	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|290aa|up_3|NC_017353.1_2197223_2198093_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|167aa|up_2|NC_017353.1_2198105_2198606_+	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional	NA|502aa|up_1|NC_017353.1_2198890_2200396_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|305aa|up_0|NC_017353.1_2200723_2201638_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|177aa|down_0|NC_017353.1_2202011_2202542_-	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|352aa|down_1|NC_017353.1_2202779_2203835_-	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|505aa|down_2|NC_017353.1_2203957_2205472_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|505aa|down_3|NC_017353.1_2205752_2207267_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|323aa|down_4|NC_017353.1_2207263_2208232_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|594aa|down_5|NC_017353.1_2208447_2210229_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|628aa|down_6|NC_017353.1_2210242_2212126_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|272aa|down_7|NC_017353.1_2212237_2213053_+	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]	NA|646aa|down_8|NC_017353.1_2213220_2215158_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|335aa|down_9|NC_017353.1_2215708_2216713_-	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]
