assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000277365.1_ASM27736v1	NC_017739	Helicobacter pylori Shi417, complete genome	1	54937-55086	1	CRISPRCasFinder	no		cas3,cas2,csx1,DEDDh	Orphan	AGATAAAGACAATCTAACTAAAG	23	0	0	NA	NA	NA	3	3	Orphan	cas3,cas2,csx1,DEDDh	NA|70aa|up_1|NC_017739.1_53322_53532_+,NA|188aa|down_0|NC_017739.1_58126_58690_+,NA|117aa|down_3|NC_017739.1_61166_61517_+	NA|311aa|up_9|NC_017739.1_39178_40111_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|333aa|up_8|NC_017739.1_40419_41418_-	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE	NA|770aa|up_7|NC_017739.1_41420_43730_-	TIGR00143, Carbamoyltransferase_HypF, [NiFe] hydrogenase maturation protein HypF	NA|331aa|up_6|NC_017739.1_43669_44662_-	COG2957, COG2957, Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]	NA|233aa|up_5|NC_017739.1_44713_45412_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|356aa|up_4|NC_017739.1_45408_46476_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|500aa|up_3|NC_017739.1_47910_49410_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|1186aa|up_2|NC_017739.1_49436_52994_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|70aa|up_1|NC_017739.1_53322_53532_+	NA	NA|343aa|up_0|NC_017739.1_53826_54855_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|188aa|down_0|NC_017739.1_58126_58690_+	NA	NA|87aa|down_1|NC_017739.1_58705_58966_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|142aa|down_2|NC_017739.1_60739_61165_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|117aa|down_3|NC_017739.1_61166_61517_+	NA	NA|810aa|down_4|NC_017739.1_61513_63943_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|262aa|down_5|NC_017739.1_64014_64800_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|200aa|down_6|NC_017739.1_64799_65399_-	TIGR00101, Urease_accessory_protein_UreG, urease accessory protein UreG	NA|240aa|down_7|NC_017739.1_65427_66147_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|171aa|down_8|NC_017739.1_66202_66715_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|196aa|down_9|NC_017739.1_66716_67304_-	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters
GCF_000277365.1_ASM27736v1	NC_017739	Helicobacter pylori Shi417, complete genome	2	55168-55253	2	CRISPRCasFinder	no		cas3,cas2,csx1,DEDDh	Orphan	AGATAAAGACAATCTAACTAAAG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,csx1,DEDDh	NA|70aa|up_1|NC_017739.1_53322_53532_+,NA|188aa|down_0|NC_017739.1_58126_58690_+,NA|117aa|down_3|NC_017739.1_61166_61517_+	NA|311aa|up_9|NC_017739.1_39178_40111_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|333aa|up_8|NC_017739.1_40419_41418_-	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE	NA|770aa|up_7|NC_017739.1_41420_43730_-	TIGR00143, Carbamoyltransferase_HypF, [NiFe] hydrogenase maturation protein HypF	NA|331aa|up_6|NC_017739.1_43669_44662_-	COG2957, COG2957, Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]	NA|233aa|up_5|NC_017739.1_44713_45412_-	pfam01555, N6_N4_Mtase, DNA methylase	NA|356aa|up_4|NC_017739.1_45408_46476_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|500aa|up_3|NC_017739.1_47910_49410_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|1186aa|up_2|NC_017739.1_49436_52994_-	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA	NA|70aa|up_1|NC_017739.1_53322_53532_+	NA	NA|343aa|up_0|NC_017739.1_53826_54855_+	TIGR04211, hypothetical_protein, SH3 domain protein	NA|188aa|down_0|NC_017739.1_58126_58690_+	NA	NA|87aa|down_1|NC_017739.1_58705_58966_+	pfam06013, WXG100, Proteins of 100 residues with WXG	NA|142aa|down_2|NC_017739.1_60739_61165_+	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1)	NA|117aa|down_3|NC_017739.1_61166_61517_+	NA	NA|810aa|down_4|NC_017739.1_61513_63943_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|262aa|down_5|NC_017739.1_64014_64800_-	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|200aa|down_6|NC_017739.1_64799_65399_-	TIGR00101, Urease_accessory_protein_UreG, urease accessory protein UreG	NA|240aa|down_7|NC_017739.1_65427_66147_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|171aa|down_8|NC_017739.1_66202_66715_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|196aa|down_9|NC_017739.1_66716_67304_-	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters
GCF_000277365.1_ASM27736v1	NC_017739	Helicobacter pylori Shi417, complete genome	3	119727-119971	1	PILER-CR	no		cas3,cas2,csx1,DEDDh	Orphan	AGTCTCTATATTGCTTGTCTTTTGTTTTTCTTGTTCTAGTTCTATCCCACTCTTGTT	57	0	0	NA	NA	NA	2	2	Orphan	cas3,cas2,csx1,DEDDh	NA|99aa|up_4|NC_017739.1_111915_112212_+,NA|44aa|down_1|NC_017739.1_124475_124607_+,NA|290aa|down_8|NC_017739.1_129951_130821_+	NA|307aa|up_9|NC_017739.1_105997_106918_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|621aa|up_8|NC_017739.1_107738_109601_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|192aa|up_7|NC_017739.1_109631_110207_-	PRK14149, PRK14149, heat shock protein GrpE; Provisional	NA|277aa|up_6|NC_017739.1_110206_111037_-	PRK03911, PRK03911, HrcA family transcriptional regulator	NA|213aa|up_5|NC_017739.1_111256_111895_+	PRK05834, PRK05834, hypothetical protein; Provisional	NA|99aa|up_4|NC_017739.1_111915_112212_+	NA	NA|629aa|up_3|NC_017739.1_112221_114108_-	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|515aa|up_2|NC_017739.1_114167_115712_-	PRK13588, PRK13588, flagellin B; Provisional	NA|737aa|up_1|NC_017739.1_115876_118087_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|309aa|up_0|NC_017739.1_118079_119006_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|809aa|down_0|NC_017739.1_121858_124285_-	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	NA|44aa|down_1|NC_017739.1_124475_124607_+	NA	NA|613aa|down_2|NC_017739.1_124647_126486_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|204aa|down_3|NC_017739.1_126482_127094_+	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3	NA|65aa|down_4|NC_017739.1_127074_127269_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|117aa|down_5|NC_017739.1_127363_127714_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|287aa|down_6|NC_017739.1_127913_128774_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|144aa|down_7|NC_017739.1_129116_129548_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|290aa|down_8|NC_017739.1_129951_130821_+	NA	NA|456aa|down_9|NC_017739.1_131686_133054_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form
GCF_000277365.1_ASM27736v1	NC_017739	Helicobacter pylori Shi417, complete genome	4	335344-335463	3	CRISPRCasFinder	no		cas3,cas2,csx1,DEDDh	Orphan	AGAGAGGCTCTCTAGCGTTACTGAAGAAAT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,cas2,csx1,DEDDh	NA,NA|23aa|down_0|NC_017739.1_335756_335825_+,NA|262aa|down_2|NC_017739.1_336438_337224_+	NA|181aa|up_9|NC_017739.1_328136_328679_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_8|NC_017739.1_328611_329550_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_7|NC_017739.1_329546_330329_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_6|NC_017739.1_330575_331568_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_5|NC_017739.1_331586_332393_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_4|NC_017739.1_332389_332623_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_3|NC_017739.1_332634_333435_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_2|NC_017739.1_333431_333836_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|144aa|up_1|NC_017739.1_334007_334439_+	sd00010, SLR, Sel1-like repeat	NA|113aa|up_0|NC_017739.1_334626_334965_+	PRK07213, PRK07213, chlorohydrolase; Provisional	NA|23aa|down_0|NC_017739.1_335756_335825_+	NA	NA|120aa|down_1|NC_017739.1_335974_336334_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|262aa|down_2|NC_017739.1_336438_337224_+	NA	NA|363aa|down_3|NC_017739.1_337213_338302_+	COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|294aa|down_4|NC_017739.1_338357_339239_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_5|NC_017739.1_339238_340789_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_6|NC_017739.1_340797_342414_-	PRK05380, pyrG, CTP synthetase; Validated	NA|221aa|down_7|NC_017739.1_342669_343332_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_8|NC_017739.1_343371_345075_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_9|NC_017739.1_345093_346125_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG
