assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	1	736908-737017	1	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	CTGGTCGCAGCGTAAAAAGCGACGCTGGCTTGCTGAT	37	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|279aa|up_9|NC_017079.1_723948_724785_+,NA|484aa|down_1|NC_017079.1_739098_740550_+	NA|279aa|up_9|NC_017079.1_723948_724785_+	NA	NA|201aa|up_8|NC_017079.1_724781_725384_+	pfam01602, Adaptin_N, Adaptin N terminal region	NA|331aa|up_7|NC_017079.1_725706_726699_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|175aa|up_6|NC_017079.1_726736_727261_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|421aa|up_5|NC_017079.1_727393_728656_+	COG3844, COG3844, Kynureninase [Amino acid transport and metabolism]	NA|95aa|up_4|NC_017079.1_728781_729066_+	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|595aa|up_3|NC_017079.1_729155_730940_+	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|240aa|up_2|NC_017079.1_730932_731652_+	COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]	NA|279aa|up_1|NC_017079.1_731644_732481_+	pfam00892, EamA, EamA-like transporter family	NA|871aa|up_0|NC_017079.1_732833_735446_+	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated	NA|199aa|down_0|NC_017079.1_738156_738753_-	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain	NA|484aa|down_1|NC_017079.1_739098_740550_+	NA	NA|243aa|down_2|NC_017079.1_741114_741843_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|255aa|down_3|NC_017079.1_741846_742611_+	pfam05711, TylF, Macrocin-O-methyltransferase (TylF)	NA|399aa|down_4|NC_017079.1_742620_743817_-	cd03807, GT4_WbnK-like, Shigella dysenteriae WbnK and similar proteins	NA|433aa|down_5|NC_017079.1_743813_745112_-	COG2327, WcaK, Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]	NA|425aa|down_6|NC_017079.1_745108_746383_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|401aa|down_7|NC_017079.1_746379_747582_-	cd03807, GT4_WbnK-like, Shigella dysenteriae WbnK and similar proteins	NA|421aa|down_8|NC_017079.1_747653_748916_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|186aa|down_9|NC_017079.1_749741_750299_-	pfam13565, HTH_32, Homeodomain-like domain
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	2	1388149-1388257	2	CRISPRCasFinder	no	cas4	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Unclear	GGCTGGTATGCCTGCCAGAGCAGCGAGGGCAAGCCGCGC	39	0	0	NA	NA	NA	1	1	Unclear	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|58aa|up_4|NC_017079.1_1381497_1381671_-,NA	NA|668aa|up_9|NC_017079.1_1375776_1377780_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	cas4|176aa|up_8|NC_017079.1_1377907_1378435_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	NA|157aa|up_7|NC_017079.1_1378442_1378913_-	cd03446, MaoC_like, MoaC_like    Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain	NA|326aa|up_6|NC_017079.1_1379096_1380074_+	COG0078, ArgF, Ornithine carbamoyltransferase [Amino acid transport and metabolism]	NA|464aa|up_5|NC_017079.1_1380086_1381478_-	PRK13238, tnaA, tryptophanase	NA|58aa|up_4|NC_017079.1_1381497_1381671_-	NA	NA|342aa|up_3|NC_017079.1_1381707_1382733_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|340aa|up_2|NC_017079.1_1382755_1383775_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|418aa|up_1|NC_017079.1_1383780_1385034_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|380aa|up_0|NC_017079.1_1385111_1386251_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|344aa|down_0|NC_017079.1_1389397_1390429_-	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|367aa|down_1|NC_017079.1_1390526_1391627_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|334aa|down_2|NC_017079.1_1391641_1392643_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|396aa|down_3|NC_017079.1_1392655_1393843_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|626aa|down_4|NC_017079.1_1393979_1395857_-	cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold	NA|364aa|down_5|NC_017079.1_1396081_1397173_-	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional	NA|337aa|down_6|NC_017079.1_1397112_1398123_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|465aa|down_7|NC_017079.1_1398331_1399726_-	PLN02646, PLN02646, argininosuccinate lyase	NA|322aa|down_8|NC_017079.1_1399722_1400688_-	pfam02517, Abi, CAAX protease self-immunity	NA|193aa|down_9|NC_017079.1_1400937_1401516_+	pfam09350, DUF1992, Domain of unknown function (DUF1992)
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	3	1517528-1520197	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Type III-A	GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC,GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC,GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC	37,37,37	0	0	NA	NA	NA:NA:NA	34,34,34	34	TypeIII-A	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA,NA|184aa|down_2|NC_017079.1_1523116_1523668_+	NA|464aa|up_9|NC_017079.1_1506300_1507692_+	TIGR00665, DnaB, replicative DNA helicase	NA|250aa|up_8|NC_017079.1_1507714_1508464_+	TIGR01446, replication_protein, DnaD and phage-associated domain	NA|492aa|up_7|NC_017079.1_1508369_1509845_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|270aa|up_6|NC_017079.1_1509945_1510755_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|219aa|up_5|NC_017079.1_1510767_1511424_-	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|269aa|up_4|NC_017079.1_1511722_1512529_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|420aa|up_3|NC_017079.1_1512806_1514066_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|208aa|up_2|NC_017079.1_1514308_1514932_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|426aa|up_1|NC_017079.1_1514931_1516209_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|261aa|up_0|NC_017079.1_1516596_1517379_-	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins	NA|512aa|down_0|NC_017079.1_1520764_1522300_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|265aa|down_1|NC_017079.1_1522296_1523091_+	PRK06526, PRK06526, transposase; Provisional	NA|184aa|down_2|NC_017079.1_1523116_1523668_+	NA	cas2|93aa|down_3|NC_017079.1_1530578_1530857_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_4|NC_017079.1_1530976_1531990_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas6|271aa|down_5|NC_017079.1_1531994_1532807_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csx15|127aa|down_6|NC_017079.1_1532955_1533336_-	cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15	NA|446aa|down_7|NC_017079.1_1533447_1534785_-	TIGR04211, hypothetical_protein, SH3 domain protein	csx1|419aa|down_8|NC_017079.1_1535078_1536335_-	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csm5gr7|378aa|down_9|NC_017079.1_1536364_1537498_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	4	1524823-1530276	2,4,2,3,4	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Type III-B,Type III-D,Type III-A,Type III-C	GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC,GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC,GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC,CGTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC,GTCTTAATCCCCTGGCGAGGATTCGCTGTCTTCTGAC	37,37,37,38,37	0	0	NA	NA	NA:NA:NA:NA:NA	65,70,70,65,65	70	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|184aa|up_0|NC_017079.1_1523116_1523668_+,NA	NA|270aa|up_9|NC_017079.1_1509945_1510755_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|219aa|up_8|NC_017079.1_1510767_1511424_-	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional	NA|269aa|up_7|NC_017079.1_1511722_1512529_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|420aa|up_6|NC_017079.1_1512806_1514066_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|208aa|up_5|NC_017079.1_1514308_1514932_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|426aa|up_4|NC_017079.1_1514931_1516209_-	PRK12297, obgE, GTPase CgtA; Reviewed	NA|261aa|up_3|NC_017079.1_1516596_1517379_-	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins	NA|512aa|up_2|NC_017079.1_1520764_1522300_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|265aa|up_1|NC_017079.1_1522296_1523091_+	PRK06526, PRK06526, transposase; Provisional	NA|184aa|up_0|NC_017079.1_1523116_1523668_+	NA	cas2|93aa|down_0|NC_017079.1_1530578_1530857_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NC_017079.1_1530976_1531990_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas6|271aa|down_2|NC_017079.1_1531994_1532807_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csx15|127aa|down_3|NC_017079.1_1532955_1533336_-	cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15	NA|446aa|down_4|NC_017079.1_1533447_1534785_-	TIGR04211, hypothetical_protein, SH3 domain protein	csx1|419aa|down_5|NC_017079.1_1535078_1536335_-	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csm5gr7|378aa|down_6|NC_017079.1_1536364_1537498_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|389aa|down_7|NC_017079.1_1537490_1538657_-	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4	csm3gr7|270aa|down_8|NC_017079.1_1538668_1539478_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|139aa|down_9|NC_017079.1_1539504_1539921_-	pfam03750, Csm2_III-A, Csm2 Type III-A
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	5	1565024-1565148	5	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	GGGCCTGGCGAGACCGTGCGGCTGCGAGCCGCACC	35	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA,NA	NA|303aa|up_9|NC_017079.1_1551934_1552843_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|315aa|up_8|NC_017079.1_1552850_1553795_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|456aa|up_7|NC_017079.1_1553877_1555245_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|347aa|up_6|NC_017079.1_1555738_1556779_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|94aa|up_5|NC_017079.1_1556911_1557193_+	cd10151, TthCsoR-like_DUF156, Thermus thermophilus CsoR, a Cu(I)-sensing transcriptional regulator, and related domains; this domain family was previously known as part of DUF156	NA|68aa|up_4|NC_017079.1_1557228_1557432_+	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|866aa|up_3|NC_017079.1_1557459_1560057_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|328aa|up_2|NC_017079.1_1560227_1561211_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|429aa|up_1|NC_017079.1_1561258_1562545_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|801aa|up_0|NC_017079.1_1562558_1564961_+	COG5305, COG5305, Predicted membrane protein [Function unknown]	NA|117aa|down_0|NC_017079.1_1565305_1565656_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|216aa|down_1|NC_017079.1_1565713_1566361_+	cd16322, TTHA1623-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1623 and related proteins; MBL-fold metallo hydrolase domain	NA|122aa|down_2|NC_017079.1_1566477_1566843_+	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|162aa|down_3|NC_017079.1_1566877_1567363_+	pfam03100, CcmE, CcmE	NA|237aa|down_4|NC_017079.1_1567437_1568148_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|258aa|down_5|NC_017079.1_1568164_1568938_+	COG2386, CcmB, ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]	NA|248aa|down_6|NC_017079.1_1569027_1569771_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|49aa|down_7|NC_017079.1_1569773_1569920_+	TIGR04391, hypothetical_protein, CcmD family protein	NA|316aa|down_8|NC_017079.1_1570024_1570972_+	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region	NA|84aa|down_9|NC_017079.1_1570979_1571231_+	pfam05768, DUF836, Glutaredoxin-like domain (DUF836)
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	6	1911912-1912006	6	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	GTAGGCTCCGGCGTGGCTGCAGG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|822aa|up_8|NC_017079.1_1897481_1899947_+,NA	NA|294aa|up_9|NC_017079.1_1896591_1897473_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|822aa|up_8|NC_017079.1_1897481_1899947_+	NA	NA|235aa|up_7|NC_017079.1_1900057_1900762_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|177aa|up_6|NC_017079.1_1903812_1904343_-	pfam00582, Usp, Universal stress protein family	NA|431aa|up_5|NC_017079.1_1904772_1906065_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|79aa|up_4|NC_017079.1_1906244_1906481_-	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	NA|421aa|up_3|NC_017079.1_1906955_1908218_-	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|419aa|up_2|NC_017079.1_1908299_1909556_-	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|208aa|up_1|NC_017079.1_1909683_1910307_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|410aa|up_0|NC_017079.1_1910395_1911625_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|338aa|down_0|NC_017079.1_1914129_1915143_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|386aa|down_1|NC_017079.1_1915367_1916525_+	pfam12770, CHAT, CHAT domain	NA|472aa|down_2|NC_017079.1_1916623_1918039_+	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|184aa|down_3|NC_017079.1_1918035_1918587_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|247aa|down_4|NC_017079.1_1918621_1919362_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|264aa|down_5|NC_017079.1_1919413_1920205_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|1019aa|down_6|NC_017079.1_1920400_1923457_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|266aa|down_7|NC_017079.1_1923468_1924266_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|298aa|down_8|NC_017079.1_1924267_1925161_+	pfam10882, bPH_5, Bacterial PH domain	NA|266aa|down_9|NC_017079.1_1925177_1925975_+	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	7	1976690-2011841	5,7,3,6,7,8,9	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR,PILER-CR	no	WYL,cas8b2,cas7,cas5,cas3,cas6,cas1,cas2,cas4	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Unclear	GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG,GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG,GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG,GCGTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG,GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG,GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG,GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG	37,37,37,39,37,37,37	0	0	NA	NA	NA:NA:NA:NA:NA:NA:NA	473,481,481,473,473,473,473	481	Unclear	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA,NA	NA|137aa|up_9|NC_017079.1_1965534_1965945_+	PRK11770, PRK11770, YccF domain-containing protein	WYL|338aa|up_8|NC_017079.1_1966568_1967582_+	pfam13280, WYL, WYL domain	cas8b2|493aa|up_7|NC_017079.1_1967588_1969067_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|358aa|up_6|NC_017079.1_1969131_1970205_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|244aa|up_5|NC_017079.1_1970223_1970955_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|791aa|up_4|NC_017079.1_1970954_1973327_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|334aa|up_3|NC_017079.1_1973379_1974381_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|342aa|up_2|NC_017079.1_1974434_1975460_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|98aa|up_1|NC_017079.1_1975471_1975765_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas4|214aa|up_0|NC_017079.1_1975757_1976399_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|93aa|down_0|NC_017079.1_2011938_2012217_+	pfam13384, HTH_23, Homeodomain-like domain	NA|280aa|down_1|NC_017079.1_2012239_2013079_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|137aa|down_2|NC_017079.1_2019229_2019640_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|87aa|down_3|NC_017079.1_2019934_2020195_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|88aa|down_4|NC_017079.1_2020207_2020471_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|357aa|down_5|NC_017079.1_2021151_2022222_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|341aa|down_6|NC_017079.1_2022205_2023228_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|513aa|down_7|NC_017079.1_2023358_2024897_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|328aa|down_8|NC_017079.1_2024905_2025889_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|341aa|down_9|NC_017079.1_2025900_2026923_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	8	2013095-2018981	10,8,4,11	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG,GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG,GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG,GTCTGAAGAAACGATCCAACAGCGAGGATACTGAAAG	37,37,37,37	0	0	NA	NA	NA:NA:NA:NA	78,80,80,78	80	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA,NA	cas8b2|493aa|up_9|NC_017079.1_1967588_1969067_+	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|358aa|up_8|NC_017079.1_1969131_1970205_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|244aa|up_7|NC_017079.1_1970223_1970955_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|791aa|up_6|NC_017079.1_1970954_1973327_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas6|334aa|up_5|NC_017079.1_1973379_1974381_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	cas1|342aa|up_4|NC_017079.1_1974434_1975460_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|98aa|up_3|NC_017079.1_1975471_1975765_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas4|214aa|up_2|NC_017079.1_1975757_1976399_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|93aa|up_1|NC_017079.1_2011938_2012217_+	pfam13384, HTH_23, Homeodomain-like domain	NA|280aa|up_0|NC_017079.1_2012239_2013079_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|137aa|down_0|NC_017079.1_2019229_2019640_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|87aa|down_1|NC_017079.1_2019934_2020195_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|88aa|down_2|NC_017079.1_2020207_2020471_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|357aa|down_3|NC_017079.1_2021151_2022222_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|341aa|down_4|NC_017079.1_2022205_2023228_+	cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail	NA|513aa|down_5|NC_017079.1_2023358_2024897_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|328aa|down_6|NC_017079.1_2024905_2025889_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|341aa|down_7|NC_017079.1_2025900_2026923_-	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)	NA|408aa|down_8|NC_017079.1_2027305_2028529_+	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis	NA|261aa|down_9|NC_017079.1_2028774_2029557_+	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	9	2062131-2062235	9	CRISPRCasFinder	no	DinG	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Type IV-A	ATCGAGAACGTGCGGCTACGAGCCGCACCTAC	32	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|205aa|up_8|NC_017079.1_2054543_2055158_+,NA	NA|306aa|up_9|NC_017079.1_2053350_2054268_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|205aa|up_8|NC_017079.1_2054543_2055158_+	NA	NA|419aa|up_7|NC_017079.1_2055328_2056585_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|212aa|up_6|NC_017079.1_2056584_2057220_+	PRK14135, recX, recombination regulator RecX; Provisional	NA|525aa|up_5|NC_017079.1_2057216_2058791_+	cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)	NA|170aa|up_4|NC_017079.1_2058805_2059315_+	cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase	NA|292aa|up_3|NC_017079.1_2059307_2060183_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|164aa|up_2|NC_017079.1_2060184_2060676_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes	NA|280aa|up_1|NC_017079.1_2060715_2061555_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|93aa|up_0|NC_017079.1_2061577_2061856_-	pfam13384, HTH_23, Homeodomain-like domain	NA|123aa|down_0|NC_017079.1_2062321_2062690_-	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|781aa|down_1|NC_017079.1_2062929_2065272_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|257aa|down_2|NC_017079.1_2065337_2066108_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|229aa|down_3|NC_017079.1_2066319_2067006_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|156aa|down_4|NC_017079.1_2067002_2067470_+	pfam09424, YqeY, Yqey-like protein	NA|740aa|down_5|NC_017079.1_2067504_2069724_+	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only]	NA|173aa|down_6|NC_017079.1_2069727_2070246_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|140aa|down_7|NC_017079.1_2070286_2070706_+	cd14265, UDPK_IM_like, Integral membrane undecaprenol kinase and similar enzymes	NA|1174aa|down_8|NC_017079.1_2070717_2074239_-	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|326aa|down_9|NC_017079.1_2074528_2075506_+	pfam07136, DUF1385, Protein of unknown function (DUF1385)
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	10	2162997-2163108	10	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	AGGAGGCTTGCATTTTTGTGGATATCTATCTGGATAGC	38	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA,NA	NA|246aa|up_9|NC_017079.1_2152184_2152922_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|310aa|up_8|NC_017079.1_2152998_2153928_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|261aa|up_7|NC_017079.1_2153958_2154741_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|484aa|up_6|NC_017079.1_2154845_2156297_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|457aa|up_5|NC_017079.1_2156344_2157715_+	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|316aa|up_4|NC_017079.1_2157732_2158680_+	cd08656, M28_like, M28 Zn-peptidase; uncharacterized subfamily	NA|216aa|up_3|NC_017079.1_2158823_2159471_-	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW	NA|411aa|up_2|NC_017079.1_2159467_2160700_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|432aa|up_1|NC_017079.1_2160790_2162086_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|125aa|up_0|NC_017079.1_2162513_2162888_-	TIGR04104, hypothetical_protein, cxxc_20_cxxc protein	NA|651aa|down_0|NC_017079.1_2163596_2165549_+	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold	NA|333aa|down_1|NC_017079.1_2165709_2166708_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|287aa|down_2|NC_017079.1_2166755_2167616_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|306aa|down_3|NC_017079.1_2167717_2168635_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|352aa|down_4|NC_017079.1_2168615_2169671_+	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	NA|333aa|down_5|NC_017079.1_2169733_2170732_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|352aa|down_6|NC_017079.1_2170762_2171818_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|265aa|down_7|NC_017079.1_2171958_2172753_+	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|468aa|down_8|NC_017079.1_2172856_2174260_+	cd16148, sulfatase_like, uncharacterized sulfatase subfamily	NA|331aa|down_9|NC_017079.1_2174275_2175268_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	11	2266567-2266677	11	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	AGGCGCGCACACAGATCAACAACATCAGCGCGCGCGAGT	39	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|59aa|up_2|NC_017079.1_2261844_2262021_-,NA|67aa|down_3|NC_017079.1_2274763_2274964_+	NA|310aa|up_9|NC_017079.1_2252434_2253364_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|307aa|up_8|NC_017079.1_2253402_2254323_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|681aa|up_7|NC_017079.1_2254650_2256693_+	pfam14871, GHL6, Hypothetical glycosyl hydrolase 6	NA|465aa|up_6|NC_017079.1_2256791_2258186_+	smart00812, Alpha_L_fucos, Alpha-L-fucosidase	NA|500aa|up_5|NC_017079.1_2258185_2259685_+	smart00812, Alpha_L_fucos, Alpha-L-fucosidase	NA|272aa|up_4|NC_017079.1_2260092_2260908_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|255aa|up_3|NC_017079.1_2260900_2261665_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|59aa|up_2|NC_017079.1_2261844_2262021_-	NA	NA|381aa|up_1|NC_017079.1_2262200_2263343_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|291aa|up_0|NC_017079.1_2263339_2264212_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|673aa|down_0|NC_017079.1_2266832_2268851_+	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin	NA|612aa|down_1|NC_017079.1_2269038_2270874_+	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|1156aa|down_2|NC_017079.1_2271207_2274675_+	pfam12770, CHAT, CHAT domain	NA|67aa|down_3|NC_017079.1_2274763_2274964_+	NA	NA|438aa|down_4|NC_017079.1_2275105_2276419_+	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase	NA|458aa|down_5|NC_017079.1_2276548_2277922_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|288aa|down_6|NC_017079.1_2278083_2278947_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|323aa|down_7|NC_017079.1_2278930_2279899_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|356aa|down_8|NC_017079.1_2279979_2281047_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|408aa|down_9|NC_017079.1_2281234_2282458_+	cd10556, SER_beta, Beta subunit of selenate reductase
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	12	2443341-2443593	12	PILER-CR	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	CGGCGGCGGGATGTACAAC	19	0	0	NA	NA	NA	3	3	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|219aa|up_7|NC_017079.1_2428271_2428928_+,NA|79aa|up_0|NC_017079.1_2437377_2437614_+,NA|130aa|down_5|NC_017079.1_2453976_2454366_+,NA|118aa|down_6|NC_017079.1_2454683_2455037_-	NA|267aa|up_9|NC_017079.1_2426237_2427038_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|415aa|up_8|NC_017079.1_2427034_2428279_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|219aa|up_7|NC_017079.1_2428271_2428928_+	NA	NA|325aa|up_6|NC_017079.1_2429187_2430162_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|119aa|up_5|NC_017079.1_2430269_2430626_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|476aa|up_4|NC_017079.1_2430738_2432166_+	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|251aa|up_3|NC_017079.1_2432306_2433059_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|68aa|up_2|NC_017079.1_2433076_2433280_+	pfam09723, Zn-ribbon_8, Zinc ribbon domain	NA|1248aa|up_1|NC_017079.1_2433308_2437052_-	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|79aa|up_0|NC_017079.1_2437377_2437614_+	NA	NA|1115aa|down_0|NC_017079.1_2446331_2449676_+	smart00327, VWA, von Willebrand factor (vWF) type A domain	NA|71aa|down_1|NC_017079.1_2450226_2450439_+	pfam00313, CSD, 'Cold-shock' DNA-binding domain	NA|519aa|down_2|NC_017079.1_2450605_2452162_+	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases	NA|220aa|down_3|NC_017079.1_2452158_2452818_+	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|316aa|down_4|NC_017079.1_2453022_2453970_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|130aa|down_5|NC_017079.1_2453976_2454366_+	NA	NA|118aa|down_6|NC_017079.1_2454683_2455037_-	NA	NA|276aa|down_7|NC_017079.1_2455220_2456048_+	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein	NA|70aa|down_8|NC_017079.1_2456044_2456254_+	pfam13275, S4_2, S4 domain	NA|347aa|down_9|NC_017079.1_2456282_2457323_+	TIGR01063, DNA_gyrase_subunit_A, DNA gyrase, A subunit
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	13	2444599-2444775	13	PILER-CR	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	AACCTTGGTGGCGGGATGTACAAC	24	0	0	NA	NA	NA	2	2	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|219aa|up_7|NC_017079.1_2428271_2428928_+,NA|79aa|up_0|NC_017079.1_2437377_2437614_+,NA|130aa|down_5|NC_017079.1_2453976_2454366_+,NA|118aa|down_6|NC_017079.1_2454683_2455037_-	NA|267aa|up_9|NC_017079.1_2426237_2427038_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|415aa|up_8|NC_017079.1_2427034_2428279_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|219aa|up_7|NC_017079.1_2428271_2428928_+	NA	NA|325aa|up_6|NC_017079.1_2429187_2430162_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|119aa|up_5|NC_017079.1_2430269_2430626_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|476aa|up_4|NC_017079.1_2430738_2432166_+	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|251aa|up_3|NC_017079.1_2432306_2433059_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|68aa|up_2|NC_017079.1_2433076_2433280_+	pfam09723, Zn-ribbon_8, Zinc ribbon domain	NA|1248aa|up_1|NC_017079.1_2433308_2437052_-	COG3903, COG3903, Predicted ATPase [General function prediction only]	NA|79aa|up_0|NC_017079.1_2437377_2437614_+	NA	NA|1115aa|down_0|NC_017079.1_2446331_2449676_+	smart00327, VWA, von Willebrand factor (vWF) type A domain	NA|71aa|down_1|NC_017079.1_2450226_2450439_+	pfam00313, CSD, 'Cold-shock' DNA-binding domain	NA|519aa|down_2|NC_017079.1_2450605_2452162_+	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases	NA|220aa|down_3|NC_017079.1_2452158_2452818_+	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)	NA|316aa|down_4|NC_017079.1_2453022_2453970_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|130aa|down_5|NC_017079.1_2453976_2454366_+	NA	NA|118aa|down_6|NC_017079.1_2454683_2455037_-	NA	NA|276aa|down_7|NC_017079.1_2455220_2456048_+	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein	NA|70aa|down_8|NC_017079.1_2456044_2456254_+	pfam13275, S4_2, S4 domain	NA|347aa|down_9|NC_017079.1_2456282_2457323_+	TIGR01063, DNA_gyrase_subunit_A, DNA gyrase, A subunit
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	14	2639812-2639920	12	CRISPRCasFinder	no	csa3	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Type I-A	GGGGGTCATGATGCCGTCCAACGGCACCGAGCTCGGC	37	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA,NA|204aa|down_6|NC_017079.1_2647573_2648185_-	NA|315aa|up_9|NC_017079.1_2625265_2626210_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|416aa|up_8|NC_017079.1_2626256_2627504_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|532aa|up_7|NC_017079.1_2627570_2629166_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|237aa|up_6|NC_017079.1_2629165_2629876_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|536aa|up_5|NC_017079.1_2630243_2631851_+	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|125aa|up_4|NC_017079.1_2631886_2632261_+	cd17535, REC_NarL-like, phosphoacceptor receiver (REC) domain of NarL (Nitrate/Nitrite response regulator L) family response regulators	NA|308aa|up_3|NC_017079.1_2632266_2633190_+	TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F	NA|462aa|up_2|NC_017079.1_2633240_2634626_-	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|841aa|up_1|NC_017079.1_2634622_2637145_-	cd13586, PBP2_Maltose_binding_like, The periplasmic-binding component of ABC transport systems specific for maltose and related polysaccharides; possess type 2 periplasmic binding fold	NA|855aa|up_0|NC_017079.1_2637226_2639791_-	cd02077, P-type_ATPase_Mg, magnesium transporting ATPase (MgtA), similar to Escherichia coli MgtA and Salmonella typhimurium MgtA	NA|506aa|down_0|NC_017079.1_2639988_2641506_-	cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs	NA|507aa|down_1|NC_017079.1_2641502_2643023_-	cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs	NA|401aa|down_2|NC_017079.1_2643432_2644635_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|389aa|down_3|NC_017079.1_2644645_2645812_-	TIGR02800, Protein_TolB, tol-pal system beta propeller repeat protein TolB	NA|293aa|down_4|NC_017079.1_2646071_2646950_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|142aa|down_5|NC_017079.1_2646973_2647399_+	pfam07366, SnoaL, SnoaL-like polyketide cyclase	NA|204aa|down_6|NC_017079.1_2647573_2648185_-	NA	NA|362aa|down_7|NC_017079.1_2648279_2649365_-	COG2810, COG2810, Predicted type IV restriction endonuclease [Defense mechanisms]	NA|691aa|down_8|NC_017079.1_2649540_2651613_-	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	csa3|111aa|down_9|NC_017079.1_2651632_2651965_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	15	2918147-2918242	13	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	CTCGTAGCCGCACGCTCTCGATGG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|59aa|up_9|NC_017079.1_2910529_2910706_-,NA|137aa|up_6|NC_017079.1_2911923_2912334_-,NA|531aa|down_2|NC_017079.1_2922297_2923890_+,NA|147aa|down_3|NC_017079.1_2923902_2924343_+	NA|59aa|up_9|NC_017079.1_2910529_2910706_-	NA	NA|93aa|up_8|NC_017079.1_2910828_2911107_+	pfam13384, HTH_23, Homeodomain-like domain	NA|280aa|up_7|NC_017079.1_2911129_2911969_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|137aa|up_6|NC_017079.1_2911923_2912334_-	NA	NA|335aa|up_5|NC_017079.1_2912330_2913335_-	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase	NA|159aa|up_4|NC_017079.1_2913547_2914024_-	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b	NA|181aa|up_3|NC_017079.1_2914173_2914716_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|404aa|up_2|NC_017079.1_2914741_2915953_-	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]	NA|240aa|up_1|NC_017079.1_2915949_2916669_-	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|338aa|up_0|NC_017079.1_2916959_2917973_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|521aa|down_0|NC_017079.1_2918372_2919935_-	TIGR00836, Ammonium_transporter, ammonium transporter	NA|648aa|down_1|NC_017079.1_2920153_2922097_+	pfam11028, DUF2723, Protein of unknown function (DUF2723)	NA|531aa|down_2|NC_017079.1_2922297_2923890_+	NA	NA|147aa|down_3|NC_017079.1_2923902_2924343_+	NA	NA|309aa|down_4|NC_017079.1_2924367_2925294_+	PRK01060, PRK01060, endonuclease IV; Provisional	NA|116aa|down_5|NC_017079.1_2925259_2925607_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|300aa|down_6|NC_017079.1_2926099_2926999_+	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism]	NA|96aa|down_7|NC_017079.1_2927020_2927308_+	pfam04456, DUF503, Protein of unknown function (DUF503)	NA|473aa|down_8|NC_017079.1_2927326_2928745_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|342aa|down_9|NC_017079.1_2928741_2929767_+	COG4850, COG4850, Uncharacterized conserved protein [Function unknown]
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	16	3035287-3035390	14	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	GTAGGTGCGGCTCGTAGCCGCACGTTCTCGAT	32	1	12	3035319-3035358|3035319-3035358|3035319-3035358|3035319-3035358|3035319-3035358|3035319-3035358|3035319-3035358|3035319-3035358|3035319-3035358|3035319-3035358|3035319-3035358|3035319-3035358	NC_017079.1_131525-131564|NC_017079.1_4803867-4803906|NC_017079.1_1223626-1223587|NC_017079.1_1223698-1223659|NC_017079.1_2411736-2411697|NC_017079.1_2411808-2411769|NC_017079.1_4422410-4422371|NC_017079.1_4422482-4422443|NC_017079.1_4422554-4422515|NC_017079.1_3208767-3208806|NC_017079.1_656287-656248|NC_017079.1_2534068-2534029	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|120aa|up_6|NC_017079.1_3023878_3024238_-,NA|152aa|up_2|NC_017079.1_3029607_3030063_-,NA|326aa|down_2|NC_017079.1_3037639_3038617_+	NA|269aa|up_9|NC_017079.1_3020688_3021495_-	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup	NA|288aa|up_8|NC_017079.1_3021628_3022492_-	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|361aa|up_7|NC_017079.1_3022534_3023617_-	cd09269, deoxyribose_mutarotase, deoxyribose mutarotase_like	NA|120aa|up_6|NC_017079.1_3023878_3024238_-	NA	NA|632aa|up_5|NC_017079.1_3024390_3026286_+	PLN02759, PLN02759, Formate--tetrahydrofolate ligase	NA|334aa|up_4|NC_017079.1_3027243_3028245_+	COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]	NA|387aa|up_3|NC_017079.1_3028433_3029594_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|152aa|up_2|NC_017079.1_3029607_3030063_-	NA	NA|966aa|up_1|NC_017079.1_3030533_3033431_+	pfam03699, UPF0182, Uncharacterized protein family (UPF0182)	NA|499aa|up_0|NC_017079.1_3033608_3035105_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|367aa|down_0|NC_017079.1_3035436_3036537_-	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|314aa|down_1|NC_017079.1_3036708_3037650_+	COG4360, APA2, ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]	NA|326aa|down_2|NC_017079.1_3037639_3038617_+	NA	NA|379aa|down_3|NC_017079.1_3038935_3040072_+	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains	NA|275aa|down_4|NC_017079.1_3040055_3040880_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|827aa|down_5|NC_017079.1_3040933_3043414_+	pfam01804, Penicil_amidase, Penicillin amidase	NA|242aa|down_6|NC_017079.1_3043568_3044294_+	pfam08239, SH3_3, Bacterial SH3 domain	NA|626aa|down_7|NC_017079.1_3044323_3046201_-	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|354aa|down_8|NC_017079.1_3046227_3047289_-	cd02197, HypE, HypE (Hydrogenase expression/formation protein)	NA|374aa|down_9|NC_017079.1_3047312_3048434_-	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	17	3289901-3289997	15	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	CATCGAGAGCGTGCGGCTACGAGCC	25	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|69aa|up_8|NC_017079.1_3270537_3270744_+,NA|762aa|up_6|NC_017079.1_3271861_3274147_-,NA|626aa|up_2|NC_017079.1_3284936_3286814_-,NA|81aa|up_1|NC_017079.1_3286974_3287217_-,NA|87aa|down_2|NC_017079.1_3294401_3294662_-,NA|268aa|down_4|NC_017079.1_3295526_3296330_-,NA|118aa|down_6|NC_017079.1_3297951_3298305_-	NA|367aa|up_9|NC_017079.1_3269340_3270441_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|69aa|up_8|NC_017079.1_3270537_3270744_+	NA	NA|203aa|up_7|NC_017079.1_3270763_3271372_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|762aa|up_6|NC_017079.1_3271861_3274147_-	NA	NA|1384aa|up_5|NC_017079.1_3274236_3278388_-	pfam07705, CARDB, CARDB	NA|1325aa|up_4|NC_017079.1_3278408_3282383_-	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin	NA|797aa|up_3|NC_017079.1_3282467_3284858_-	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin	NA|626aa|up_2|NC_017079.1_3284936_3286814_-	NA	NA|81aa|up_1|NC_017079.1_3286974_3287217_-	NA	NA|673aa|up_0|NC_017079.1_3287568_3289587_-	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein	NA|384aa|down_0|NC_017079.1_3291799_3292951_-	smart00933, NurA, NurA nuclease	NA|379aa|down_1|NC_017079.1_3292947_3294084_-	pfam14236, DUF4338, Domain of unknown function (DUF4338)	NA|87aa|down_2|NC_017079.1_3294401_3294662_-	NA	NA|267aa|down_3|NC_017079.1_3294713_3295514_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|268aa|down_4|NC_017079.1_3295526_3296330_-	NA	NA|540aa|down_5|NC_017079.1_3296339_3297959_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|118aa|down_6|NC_017079.1_3297951_3298305_-	NA	NA|382aa|down_7|NC_017079.1_3298554_3299700_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|254aa|down_8|NC_017079.1_3299751_3300513_+	pfam03808, Glyco_tran_WecB, Glycosyl transferase WecB/TagA/CpsF family	NA|289aa|down_9|NC_017079.1_3300678_3301545_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	18	4809265-4809413	16	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	TAACCCAGACGCCTACCTTTACACCGACACCAACCAACACGCCGACG	47	1	1	4809312-4809366	NC_017079.1_4809384-4809438	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA,NA|200aa|down_1|NC_017079.1_4811989_4812589_-	NA|238aa|up_9|NC_017079.1_4791864_4792578_-	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|327aa|up_8|NC_017079.1_4792656_4793637_-	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen	NA|537aa|up_7|NC_017079.1_4793646_4795257_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|296aa|up_6|NC_017079.1_4795610_4796498_-	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins	NA|783aa|up_5|NC_017079.1_4796995_4799344_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|594aa|up_4|NC_017079.1_4799318_4801100_-	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III	NA|87aa|up_3|NC_017079.1_4801237_4801498_-	pfam09189, DUF1952, Domain of unknown function (DUF1952)	NA|95aa|up_2|NC_017079.1_4801494_4801779_-	cd17505, Ubl_SAMP1_like, ubiquitin-like (Ubl) domain found in small archaeal modifier protein 1 (SAMP1)	NA|557aa|up_1|NC_017079.1_4801971_4803642_-	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional	NA|511aa|up_0|NC_017079.1_4804278_4805811_+	PRK06370, PRK06370, FAD-containing oxidoreductase	NA|560aa|down_0|NC_017079.1_4810225_4811905_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|200aa|down_1|NC_017079.1_4811989_4812589_-	NA	NA|286aa|down_2|NC_017079.1_4813067_4813925_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|309aa|down_3|NC_017079.1_4813943_4814870_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|444aa|down_4|NC_017079.1_4814982_4816314_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|90aa|down_5|NC_017079.1_4816489_4816759_+	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|418aa|down_6|NC_017079.1_4816755_4818009_-	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins	NA|266aa|down_7|NC_017079.1_4818222_4819020_+	pfam02585, PIG-L, GlcNAc-PI de-N-acetylase	NA|585aa|down_8|NC_017079.1_4819210_4820965_+	pfam08811, DUF1800, Protein of unknown function (DUF1800)	NA|455aa|down_9|NC_017079.1_4821008_4822373_+	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000281175.1_ASM28117v1	NC_017079	Caldilinea aerophila DSM 14535 = NBRC 104270, complete genome	19	4904165-4904289	17	CRISPRCasFinder	no		DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	Orphan	GATCCATCGAGAGCGTGCGGCTACGAGCCGCACCT	35	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas4,cas2,cas1,cas6,csx15,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas3,WYL,cas8b2,cas7,cas5,csa3,csc1gr5,cas11d,cas10d,cas3HD,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7	NA|844aa|up_1|NC_017079.1_4899738_4902270_-,NA|99aa|down_8|NC_017079.1_4916531_4916828_-	NA|329aa|up_9|NC_017079.1_4885696_4886683_-	PRK05442, PRK05442, malate dehydrogenase; Provisional	NA|706aa|up_8|NC_017079.1_4886952_4889070_+	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella	NA|196aa|up_7|NC_017079.1_4889262_4889850_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|200aa|up_6|NC_017079.1_4890001_4890601_+	TIGR02952, RNA_polymerase_sigma-70_factor_ECF_subfamily, RNA polymerase sigma-70 factor, TIGR02952 family	NA|562aa|up_5|NC_017079.1_4890707_4892393_+	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|399aa|up_4|NC_017079.1_4892419_4893616_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|1446aa|up_3|NC_017079.1_4893702_4898040_+	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein	NA|525aa|up_2|NC_017079.1_4898167_4899742_-	pfam08811, DUF1800, Protein of unknown function (DUF1800)	NA|844aa|up_1|NC_017079.1_4899738_4902270_-	NA	NA|466aa|up_0|NC_017079.1_4902366_4903764_-	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown]	NA|963aa|down_0|NC_017079.1_4904419_4907308_-	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|88aa|down_1|NC_017079.1_4907913_4908177_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|141aa|down_2|NC_017079.1_4908167_4908590_+	cd09873, PIN_Pae0151-like, VapC-like PIN domain of the Pyrobaculum aerophilum Pae0151 and Pae2754 proteins and homologs	NA|441aa|down_3|NC_017079.1_4908873_4910196_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|364aa|down_4|NC_017079.1_4910243_4911335_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|939aa|down_5|NC_017079.1_4911618_4914435_-	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|370aa|down_6|NC_017079.1_4914686_4915796_+	cd03804, GT4_WbaZ-like, mannosyltransferase WbaZ and similar proteins	NA|232aa|down_7|NC_017079.1_4915820_4916516_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|99aa|down_8|NC_017079.1_4916531_4916828_-	NA	NA|98aa|down_9|NC_017079.1_4916991_4917285_+	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal
