assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000283535.1_ASM28353v1	NC_016002	Pseudogulbenkiania sp. NH8B, complete genome	1	34302-34451	1	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	Orphan	ACTCCGTGTCCATGCCGGTTCCTGTGCGCCGGCGGCACTTGACCGGCCTTGCC	53	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	NA|88aa|up_7|NC_016002.1_28244_28508_+,NA	NA|212aa|up_9|NC_016002.1_26843_27479_-	TIGR03035, trp_arylform, arylformamidase	NA|158aa|up_8|NC_016002.1_27621_28095_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|88aa|up_7|NC_016002.1_28244_28508_+	NA	NA|159aa|up_6|NC_016002.1_28728_29205_+	cd04332, YbaK_like, YbaK-like	NA|69aa|up_5|NC_016002.1_29261_29468_+	COG3369, COG3369, Zinc finger domain containing protein (CDGSH-type) [Function unknown]	NA|214aa|up_4|NC_016002.1_29570_30212_-	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase	NA|418aa|up_3|NC_016002.1_30324_31578_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|359aa|up_2|NC_016002.1_31577_32654_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|64aa|up_1|NC_016002.1_32988_33180_+	pfam11127, DUF2892, Protein of unknown function (DUF2892)	NA|289aa|up_0|NC_016002.1_33367_34234_+	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|314aa|down_0|NC_016002.1_34725_35667_+	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein	NA|297aa|down_1|NC_016002.1_35700_36591_+	COG3246, COG3246, Uncharacterized conserved protein [Function unknown]	NA|322aa|down_2|NC_016002.1_36717_37683_+	PRK07066, PRK07066, L-carnitine dehydrogenase	NA|166aa|down_3|NC_016002.1_37684_38182_+	PRK07531, PRK07531, carnitine 3-dehydrogenase	NA|653aa|down_4|NC_016002.1_38178_40137_+	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|331aa|down_5|NC_016002.1_40273_41266_-	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|426aa|down_6|NC_016002.1_41497_42775_+	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1031aa|down_7|NC_016002.1_42771_45864_+	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|1035aa|down_8|NC_016002.1_45860_48965_+	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional	NA|468aa|down_9|NC_016002.1_48965_50369_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
GCF_000283535.1_ASM28353v1	NC_016002	Pseudogulbenkiania sp. NH8B, complete genome	2	704586-708702	2,1,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	Type I-E	GTGATCCCCGCGCCAGCGGGGATGAACCG,GTGATCCCCGCGCCAGCGGGGATGAACCG,GTGATCCCCGCGCCAGCGGGGATGAACCG,GTGATCCCCGCGCCAGCGGGGATGAACCG,GTGATCCCCGCGCCAGCGGGGATGAACCG	29,29,29,29,29	1	1	704615-704646	NC_016002.1_988209-988240	I-E:I-E:I-E:I-E:I-E	67,67,61,61,61	67	TypeI-E	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	NA|68aa|up_7|NC_016002.1_698392_698596_+,NA	NA|337aa|up_9|NC_016002.1_693896_694907_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	cas3|925aa|up_8|NC_016002.1_695063_697838_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|68aa|up_7|NC_016002.1_698392_698596_+	NA	cas8e|536aa|up_6|NC_016002.1_698600_700208_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|206aa|up_5|NC_016002.1_700204_700822_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|350aa|up_4|NC_016002.1_700818_701868_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|255aa|up_3|NC_016002.1_701867_702632_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|222aa|up_2|NC_016002.1_702628_703294_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|303aa|up_1|NC_016002.1_703293_704202_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|up_0|NC_016002.1_704182_704479_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|448aa|down_0|NC_016002.1_708939_710283_+	PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional	NA|98aa|down_1|NC_016002.1_710284_710578_+	cd06982, cupin_BauB-like, Pseudomonas aeruginosa BauB and related proteins, cupin domain	NA|498aa|down_2|NC_016002.1_710697_712191_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|407aa|down_3|NC_016002.1_712269_713490_-	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|300aa|down_4|NC_016002.1_713675_714575_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|448aa|down_5|NC_016002.1_714616_715960_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|625aa|down_6|NC_016002.1_715956_717831_-	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|266aa|down_7|NC_016002.1_717850_718648_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|256aa|down_8|NC_016002.1_718659_719427_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|323aa|down_9|NC_016002.1_719434_720403_-	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily
GCF_000283535.1_ASM28353v1	NC_016002	Pseudogulbenkiania sp. NH8B, complete genome	3	1775215-1775306	3	CRISPRCasFinder	no		cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	Orphan	TGACAAAAGCCGCGCAAAAGAGT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	NA|125aa|up_9|NC_016002.1_1761904_1762279_+,NA|144aa|up_7|NC_016002.1_1765527_1765959_+,NA|211aa|up_6|NC_016002.1_1765958_1766591_+,NA|631aa|up_5|NC_016002.1_1766590_1768483_+,NA|128aa|up_4|NC_016002.1_1768479_1768863_+,NA|107aa|up_3|NC_016002.1_1768859_1769180_+,NA|443aa|up_2|NC_016002.1_1769176_1770505_+,NA|985aa|up_0|NC_016002.1_1771812_1774767_-,NA|97aa|down_8|NC_016002.1_1782724_1783015_-	NA|125aa|up_9|NC_016002.1_1761904_1762279_+	NA	NA|1048aa|up_8|NC_016002.1_1762391_1765535_+	COG3941, COG3941, Mu-like prophage protein [General function prediction only]	NA|144aa|up_7|NC_016002.1_1765527_1765959_+	NA	NA|211aa|up_6|NC_016002.1_1765958_1766591_+	NA	NA|631aa|up_5|NC_016002.1_1766590_1768483_+	NA	NA|128aa|up_4|NC_016002.1_1768479_1768863_+	NA	NA|107aa|up_3|NC_016002.1_1768859_1769180_+	NA	NA|443aa|up_2|NC_016002.1_1769176_1770505_+	NA	NA|243aa|up_1|NC_016002.1_1770515_1771244_-	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional	NA|985aa|up_0|NC_016002.1_1771812_1774767_-	NA	NA|216aa|down_0|NC_016002.1_1775933_1776581_-	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|510aa|down_1|NC_016002.1_1776644_1778174_-	PRK09224, PRK09224, threonine ammonia-lyase IlvA	NA|381aa|down_2|NC_016002.1_1778405_1779548_+	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|90aa|down_3|NC_016002.1_1779614_1779884_+	pfam04359, DUF493, Protein of unknown function (DUF493)	NA|208aa|down_4|NC_016002.1_1779886_1780510_+	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|316aa|down_5|NC_016002.1_1780506_1781454_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|225aa|down_6|NC_016002.1_1781437_1782112_+	COG3658, COG3658, Cytochrome b [Energy production and conversion]	NA|147aa|down_7|NC_016002.1_1782177_1782618_-	pfam01322, Cytochrom_C_2, Cytochrome C'	NA|97aa|down_8|NC_016002.1_1782724_1783015_-	NA	NA|145aa|down_9|NC_016002.1_1783162_1783597_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
GCF_000283535.1_ASM28353v1	NC_016002	Pseudogulbenkiania sp. NH8B, complete genome	4	2213566-2213657	4	CRISPRCasFinder	no	csa3	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	Type I-A	TGACAAAAGCCGCGCAAAAGAGT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DEDDh,csa3,DinG,WYL	NA|125aa|up_9|NC_016002.1_2200255_2200630_+,NA|144aa|up_7|NC_016002.1_2203878_2204310_+,NA|211aa|up_6|NC_016002.1_2204309_2204942_+,NA|631aa|up_5|NC_016002.1_2204941_2206834_+,NA|128aa|up_4|NC_016002.1_2206830_2207214_+,NA|107aa|up_3|NC_016002.1_2207210_2207531_+,NA|443aa|up_2|NC_016002.1_2207527_2208856_+,NA|985aa|up_0|NC_016002.1_2210163_2213118_-,NA	NA|125aa|up_9|NC_016002.1_2200255_2200630_+	NA	NA|1048aa|up_8|NC_016002.1_2200742_2203886_+	COG3941, COG3941, Mu-like prophage protein [General function prediction only]	NA|144aa|up_7|NC_016002.1_2203878_2204310_+	NA	NA|211aa|up_6|NC_016002.1_2204309_2204942_+	NA	NA|631aa|up_5|NC_016002.1_2204941_2206834_+	NA	NA|128aa|up_4|NC_016002.1_2206830_2207214_+	NA	NA|107aa|up_3|NC_016002.1_2207210_2207531_+	NA	NA|443aa|up_2|NC_016002.1_2207527_2208856_+	NA	NA|243aa|up_1|NC_016002.1_2208866_2209595_-	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional	NA|985aa|up_0|NC_016002.1_2210163_2213118_-	NA	NA|515aa|down_0|NC_016002.1_2214389_2215934_-	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|160aa|down_1|NC_016002.1_2215930_2216410_-	PRK05988, PRK05988, formate dehydrogenase subunit gamma; Validated	NA|370aa|down_2|NC_016002.1_2216720_2217830_+	pfam12727, PBP_like, PBP superfamily domain	NA|241aa|down_3|NC_016002.1_2217884_2218607_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|585aa|down_4|NC_016002.1_2218694_2220449_-	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase	NA|121aa|down_5|NC_016002.1_2220469_2220832_-	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD	NA|160aa|down_6|NC_016002.1_2220845_2221325_-	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family	csa3|124aa|down_7|NC_016002.1_2221330_2221702_-	pfam12840, HTH_20, Helix-turn-helix domain	NA|626aa|down_8|NC_016002.1_2221848_2223726_-	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism]	NA|230aa|down_9|NC_016002.1_2223742_2224432_-	PRK10529, PRK10529, DNA-binding transcriptional activator KdpE; Provisional
