assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000284095.1_ASM28409v1	NC_017068	Selenomonas ruminantium subsp. lactilytica TAM6421, complete genome	1	148083-148196	1	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k	Orphan	GCGCGACGAAACTCTGAACGGTATATTTTGCTTGTGGCAAAAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k,WYL	NA|97aa|up_6|NC_017068.1_133191_133482_+,NA	NA|147aa|up_9|NC_017068.1_129745_130186_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|638aa|up_8|NC_017068.1_130225_132139_+	pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase	NA|255aa|up_7|NC_017068.1_132381_133146_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|97aa|up_6|NC_017068.1_133191_133482_+	NA	NA|454aa|up_5|NC_017068.1_140274_141636_+	TIGR03173, pbuX, xanthine permease	NA|192aa|up_4|NC_017068.1_141653_142229_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|434aa|up_3|NC_017068.1_142561_143863_+	cd00519, Lipase_3, Lipase (class 3)	NA|375aa|up_2|NC_017068.1_143941_145066_+	COG2768, COG2768, Uncharacterized Fe-S center protein [General function prediction only]	NA|317aa|up_1|NC_017068.1_145125_146076_-	pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus	NA|471aa|up_0|NC_017068.1_146448_147861_+	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism]	NA|254aa|down_0|NC_017068.1_148277_149039_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain	NA|368aa|down_1|NC_017068.1_149056_150160_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|160aa|down_2|NC_017068.1_150159_150639_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|329aa|down_3|NC_017068.1_150728_151715_+	pfam10112, Halogen_Hydrol, 5-bromo-4-chloroindolyl phosphate hydrolysis protein	NA|379aa|down_4|NC_017068.1_151754_152891_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|661aa|down_5|NC_017068.1_152894_154877_+	TIGR02214, sporulation_specific_penicillin-binding_protein, stage V sporulation protein D	NA|294aa|down_6|NC_017068.1_154906_155788_+	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like	NA|397aa|down_7|NC_017068.1_155774_156965_+	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like	NA|500aa|down_8|NC_017068.1_157165_158665_+	PRK03643, PRK03643, tagaturonate reductase	NA|496aa|down_9|NC_017068.1_158676_160164_+	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus
GCF_000284095.1_ASM28409v1	NC_017068	Selenomonas ruminantium subsp. lactilytica TAM6421, complete genome	2	228232-228404	2	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k	Orphan	TTCTGTTCCGAATGCGGCAAGCC	23	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k,WYL	NA|430aa|up_4|NC_017068.1_220862_222152_+,NA|370aa|down_0|NC_017068.1_228444_229554_+	NA|268aa|up_9|NC_017068.1_216001_216805_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|305aa|up_8|NC_017068.1_216837_217752_+	PRK05416, PRK05416, RNase adapter RapZ	NA|439aa|up_7|NC_017068.1_217755_219072_+	pfam01933, UPF0052, Uncharacterized protein family UPF0052	NA|312aa|up_6|NC_017068.1_219102_220038_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]	NA|266aa|up_5|NC_017068.1_220041_220839_+	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands	NA|430aa|up_4|NC_017068.1_220862_222152_+	NA	NA|649aa|up_3|NC_017068.1_222223_224170_+	PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	NA|260aa|up_2|NC_017068.1_224171_224951_+	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|272aa|up_1|NC_017068.1_225144_225960_+	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|280aa|up_0|NC_017068.1_226015_226855_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|370aa|down_0|NC_017068.1_228444_229554_+	NA	NA|281aa|down_1|NC_017068.1_229570_230413_+	pfam04536, TPM_phosphatase, TPM domain	NA|339aa|down_2|NC_017068.1_230537_231554_-	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|128aa|down_3|NC_017068.1_231932_232316_-	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|283aa|down_4|NC_017068.1_232334_233183_-	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|523aa|down_5|NC_017068.1_233889_235458_+	PRK15374, PRK15374, type III secretion system needle tip complex protein SipB	NA|434aa|down_6|NC_017068.1_235495_236797_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|319aa|down_7|NC_017068.1_236819_237776_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|617aa|down_8|NC_017068.1_237781_239632_+	cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of hyaluronan	NA|626aa|down_9|NC_017068.1_239651_241529_+	cd10969, CE4_Ecf1_like_5s, Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins
GCF_000284095.1_ASM28409v1	NC_017068	Selenomonas ruminantium subsp. lactilytica TAM6421, complete genome	3	687037-687152	3	CRISPRCasFinder	no		c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k	Orphan	GGCCTCTCACGCCAGGTTCACGGGTTCGAATCCCGTAGG	39	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k,WYL	NA,NA	NA|408aa|up_9|NC_017068.1_676659_677883_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|592aa|up_8|NC_017068.1_678059_679835_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|65aa|up_7|NC_017068.1_680060_680255_+	cd00565, Ubl_ThiS, ubiquitin-like (Ubl) domain found in sulfur carrier protein ThiS	NA|260aa|up_6|NC_017068.1_680275_681055_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|418aa|up_5|NC_017068.1_681067_682321_+	PRK09240, thiH, 2-iminoacetate synthase ThiH	NA|199aa|up_4|NC_017068.1_682307_682904_+	pfam02581, TMP-TENI, Thiamine monophosphate synthase	NA|238aa|up_3|NC_017068.1_682965_683679_+	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	NA|304aa|up_2|NC_017068.1_683777_684689_+	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase	NA|208aa|up_1|NC_017068.1_684854_685478_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|486aa|up_0|NC_017068.1_685514_686972_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|195aa|down_0|NC_017068.1_687292_687877_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|165aa|down_1|NC_017068.1_687873_688368_+	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|188aa|down_2|NC_017068.1_688372_688936_+	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b	NA|311aa|down_3|NC_017068.1_689139_690072_+	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily	NA|570aa|down_4|NC_017068.1_690088_691798_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|154aa|down_5|NC_017068.1_691867_692329_+	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|166aa|down_6|NC_017068.1_692387_692885_+	pfam02620, DUF177, Uncharacterized ACR, COG1399	NA|60aa|down_7|NC_017068.1_692912_693092_+	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed	NA|250aa|down_8|NC_017068.1_693141_693891_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|89aa|down_9|NC_017068.1_694021_694288_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed
GCF_000284095.1_ASM28409v1	NC_017068	Selenomonas ruminantium subsp. lactilytica TAM6421, complete genome	4	1013714-1015844	4,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k	Type I-F	GTGTTCCGCCGTATAGGCGGCTTAGAAA,GTGTTCCGCCGTATAGGCGGCTTAGAAA,GTGTTCCGCCGTATAGGCGGCTTAGAAA,GTGTTCCGCCGTATAGGCGGCTTAGAAA	28,28,28,28	0	0	NA	NA	I-F:I-F:I-F:I-F	35,35,28,28	35	TypeI-F	c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k,WYL	NA,NA|173aa|down_5|NC_017068.1_1020650_1021169_-,NA|125aa|down_6|NC_017068.1_1021256_1021631_-	NA|618aa|up_9|NC_017068.1_1000700_1002554_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|276aa|up_8|NC_017068.1_1002553_1003381_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|340aa|up_7|NC_017068.1_1003377_1004397_+	pfam01032, FecCD, FecCD transport family	NA|214aa|up_6|NC_017068.1_1004403_1005045_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|138aa|up_5|NC_017068.1_1005031_1005445_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|268aa|up_4|NC_017068.1_1005446_1006250_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|658aa|up_3|NC_017068.1_1006289_1008263_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|240aa|up_2|NC_017068.1_1008406_1009126_+	cd07424, MPP_PrpA_PrpB, PrpA and PrpB, metallophosphatase domain	cas1|330aa|up_1|NC_017068.1_1009315_1010305_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1093aa|up_0|NC_017068.1_1010276_1013555_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas8f|385aa|down_0|NC_017068.1_1015937_1017092_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|311aa|down_1|NC_017068.1_1017105_1018038_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|337aa|down_2|NC_017068.1_1018040_1019051_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|193aa|down_3|NC_017068.1_1019056_1019635_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|191aa|down_4|NC_017068.1_1019753_1020326_-	cd02140, Frm2-like, nitroreductase family protein	NA|173aa|down_5|NC_017068.1_1020650_1021169_-	NA	NA|125aa|down_6|NC_017068.1_1021256_1021631_-	NA	NA|657aa|down_7|NC_017068.1_1022025_1023996_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|740aa|down_8|NC_017068.1_1024023_1026243_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|151aa|down_9|NC_017068.1_1026343_1026796_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
GCF_000284095.1_ASM28409v1	NC_017068	Selenomonas ruminantium subsp. lactilytica TAM6421, complete genome	5	1860917-1861020	5	CRISPRCasFinder	no	cas14k	c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k	Unclear	ATAACGCAGTTGTTCAAATTTTGCCATAGGCAAA	34	0	0	NA	NA	NA	1	1	TypeV	c2c9_V-U4,cas3,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,PD-DExK,DEDDh,cas14k,WYL	NA,NA|79aa|down_1|NC_017068.1_1863672_1863909_-,NA|232aa|down_3|NC_017068.1_1864619_1865315_-,NA|136aa|down_4|NC_017068.1_1865331_1865739_-,NA|69aa|down_5|NC_017068.1_1865741_1865948_-,NA|54aa|down_6|NC_017068.1_1866037_1866199_-,NA|111aa|down_7|NC_017068.1_1866218_1866551_-,NA|94aa|down_8|NC_017068.1_1866926_1867208_-,NA|131aa|down_9|NC_017068.1_1867210_1867603_-	NA|409aa|up_9|NC_017068.1_1849388_1850615_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|354aa|up_8|NC_017068.1_1850598_1851660_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|290aa|up_7|NC_017068.1_1851770_1852640_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|855aa|up_6|NC_017068.1_1852707_1855272_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|103aa|up_5|NC_017068.1_1855285_1855594_-	cd10156, FpFrmR-Cterm-like_DUF156, C-terminal domain of Faecalibacterium prausnitzii A2-165 FrmR , and related domains; this domain family was previously known as part of DUF156	NA|398aa|up_4|NC_017068.1_1855674_1856868_-	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|283aa|up_3|NC_017068.1_1856959_1857808_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|243aa|up_2|NC_017068.1_1857804_1858533_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|419aa|up_1|NC_017068.1_1858539_1859796_+	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain	NA|318aa|up_0|NC_017068.1_1859792_1860746_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|662aa|down_0|NC_017068.1_1861068_1863054_-	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|79aa|down_1|NC_017068.1_1863672_1863909_-	NA	NA|212aa|down_2|NC_017068.1_1863982_1864618_-	PRK00024, PRK00024, DNA repair protein RadC	NA|232aa|down_3|NC_017068.1_1864619_1865315_-	NA	NA|136aa|down_4|NC_017068.1_1865331_1865739_-	NA	NA|69aa|down_5|NC_017068.1_1865741_1865948_-	NA	NA|54aa|down_6|NC_017068.1_1866037_1866199_-	NA	NA|111aa|down_7|NC_017068.1_1866218_1866551_-	NA	NA|94aa|down_8|NC_017068.1_1866926_1867208_-	NA	NA|131aa|down_9|NC_017068.1_1867210_1867603_-	NA
