The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017082	Bradyrhizobium cosmicum, complete genome	7231841	2880332	2908462	7231841	portal,integrase,protease,capsid,terminase,tail,head	Rhodobacter_phage(16.67%)	37	2877531:2877546	2901418:2901433
2877531:2877546	attL	GGCGAGGCCGGCCGCG	NA	NA	NA	NA
WP_041748219.1|2880332_2881517_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_041748825.1|2881701_2881887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015685286.1|2882110_2882323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015685287.1|2882319_2882817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015685288.1|2882891_2883380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041748220.1|2883343_2883985_-	phage repressor	NA	A0A1X9HW95	Ruegeria_phage	36.4	3.3e-15
WP_015685290.1|2884061_2884313_+	hypothetical protein	NA	A0A1B0T6N5	Pelagibaca_phage	51.1	2.5e-06
WP_015685292.1|2884515_2884707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685293.1|2884793_2885099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685294.1|2885091_2885445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685295.1|2885441_2885777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685296.1|2885773_2886850_+	hypothetical protein	NA	A0A060AGD9	Listeria_phage	33.7	5.1e-16
WP_015685297.1|2886846_2887290_+	Myb-like DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_015685298.1|2887286_2887730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685299.1|2887726_2888074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685300.1|2888066_2889977_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_015685301.1|2889981_2890254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685302.1|2890292_2890766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041748223.1|2890861_2891116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_083850043.1|2891112_2893905_+	bifunctional DNA primase/polymerase	NA	G8DGC0	Emiliania_huxleyi_virus	36.7	2.5e-83
WP_015685305.1|2894287_2894878_+	transcription termination/antitermination NusG family protein	NA	NA	NA	NA	NA
WP_015685306.1|2895085_2895283_-	DUF3606 domain-containing protein	NA	NA	NA	NA	NA
WP_015685307.1|2895319_2895595_+	HNH endonuclease	NA	A0A286N2R3	Klebsiella_phage	44.4	1.1e-10
WP_144031609.1|2895624_2896941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144031610.1|2897122_2897620_+	hypothetical protein	NA	I3ULZ5	Rhodobacter_phage	52.0	1.5e-31
WP_144031929.1|2897681_2899307_+|terminase	terminase large subunit	terminase	I3ULZ6	Rhodobacter_phage	61.1	2.3e-177
WP_015685310.1|2899311_2900568_+|portal	phage portal protein	portal	Q6JIM9	Burkholderia_virus	45.4	3.1e-81
WP_041748829.1|2900591_2901281_+|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	46.9	2.0e-42
WP_015685312.1|2901295_2902642_+|capsid	phage major capsid protein	capsid	A0A2H4JD98	uncultured_Caudovirales_phage	48.5	4.0e-95
2901418:2901433	attR	CGCGGCCGGCCTCGCC	NA	NA	NA	NA
WP_015685313.1|2902742_2902934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685314.1|2903017_2903389_+	hypothetical protein	NA	A0A1B1IUW2	uncultured_Mediterranean_phage	36.6	1.6e-06
WP_015685315.1|2903450_2903936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685316.1|2903939_2904134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015685317.1|2904133_2905258_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_041748226.1|2905295_2906321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015685318.1|2906421_2907675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015685319.1|2907799_2908462_+|head,tail	phage head-tail connector protein	head,tail	B4UTP7	Rhizobium_phage	30.1	3.1e-08
>prophage 2
NC_017082	Bradyrhizobium cosmicum, complete genome	7231841	3504805	3514889	7231841	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_015685904.1|3504805_3505834_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.0	5.9e-22
WP_015685905.1|3505830_3506670_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	36.7	2.5e-31
WP_015685906.1|3506691_3507441_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	8.9e-44
WP_015685907.1|3507605_3507839_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.4e-08
WP_015685908.1|3507924_3508449_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_015685909.1|3508445_3509258_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.0	3.2e-55
WP_015685910.1|3509454_3510786_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.2	9.1e-100
WP_015685911.1|3510880_3511243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041748289.1|3511369_3512137_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	37.6	1.1e-36
WP_015685913.1|3512140_3512512_-	response regulator	NA	NA	NA	NA	NA
WP_144031650.1|3512740_3513391_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.4	2.3e-27
WP_015685915.1|3513500_3514889_+	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	40.9	2.4e-18
>prophage 3
NC_017082	Bradyrhizobium cosmicum, complete genome	7231841	3917549	3957460	7231841	portal,integrase,protease,capsid,terminase,tail	Sinorhizobium_phage(21.43%)	53	3955875:3955891	3963100:3963116
WP_015686305.1|3917549_3918059_-|protease	protease IV	protease	NA	NA	NA	NA
WP_015686306.1|3918055_3919279_-	peptidoglycan-binding protein	NA	NA	NA	NA	NA
WP_015686307.1|3919564_3920248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015686308.1|3920285_3921101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686309.1|3921101_3922712_-	hypothetical protein	NA	A0A076G7H5	Sinorhizobium_phage	36.1	4.2e-14
WP_015686310.1|3922746_3924222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144031947.1|3924214_3924637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686312.1|3924651_3925257_-	hypothetical protein	NA	A0A076G707	Sinorhizobium_phage	29.8	1.2e-17
WP_015686313.1|3925253_3925946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686314.1|3925945_3927952_-|tail	phage tail tape measure protein	tail	A0A2H4PI09	Pseudomonas_phage	24.0	2.0e-05
WP_158324551.1|3927950_3928328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015686316.1|3928306_3928744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686317.1|3928789_3930013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686318.1|3930027_3930495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686319.1|3930502_3930973_-	hypothetical protein	NA	F8TVA4	EBPR_siphovirus	28.3	1.8e-05
WP_015686320.1|3930969_3931302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686321.1|3931301_3931676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686322.1|3931679_3932009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686323.1|3932106_3932418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686324.1|3932419_3933046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686325.1|3933178_3933583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041748337.1|3933672_3934122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686327.1|3934202_3935546_-|capsid	phage major capsid protein	capsid	A0A1B1IQC5	uncultured_Mediterranean_phage	30.8	2.5e-28
WP_015686328.1|3935645_3936506_-	S49 family peptidase	NA	H6WYH0	Enterobacter_phage	34.4	1.2e-23
WP_015686329.1|3936495_3937839_-|portal	phage portal protein	portal	Q6UAX8	Klebsiella_phage	31.7	3.9e-42
WP_015686330.1|3937838_3939554_-|terminase	terminase large subunit	terminase	I3ULZ6	Rhodobacter_phage	42.2	1.5e-115
WP_041748338.1|3939555_3940050_-	hypothetical protein	NA	I3ULZ5	Rhodobacter_phage	40.9	9.1e-21
WP_015686332.1|3940144_3940423_-	HNH endonuclease	NA	A0A286N2R3	Klebsiella_phage	42.2	4.5e-09
WP_015686333.1|3940544_3941045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686335.1|3942180_3942864_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_051026563.1|3942860_3944051_-	helix-turn-helix domain-containing protein	NA	A0A291AUK7	Sinorhizobium_phage	37.8	6.4e-20
WP_015686337.1|3944098_3944377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686338.1|3944369_3944828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686339.1|3944824_3945037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144031677.1|3945432_3946083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015686342.1|3946088_3946331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686343.1|3946327_3946858_-	phosphohydrolase	NA	B4UTT6	Rhizobium_phage	46.6	2.1e-39
WP_015686344.1|3946854_3949515_-	hypothetical protein	NA	A0A218M985	Mycobacterium_phage	41.2	6.8e-54
WP_041748340.1|3949507_3950011_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_015686346.1|3950007_3950280_-	DUF2312 domain-containing protein	NA	A0A2L0V115	Agrobacterium_phage	65.8	8.0e-19
WP_015686347.1|3950276_3950690_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_015686348.1|3950689_3950941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686349.1|3950937_3951105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015686351.1|3951538_3952159_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_144031678.1|3952122_3952632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015686353.1|3952761_3953049_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144031948.1|3953161_3953638_+	phospholipase	NA	NA	NA	NA	NA
WP_015686355.1|3953637_3953883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144031949.1|3953996_3954176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015686357.1|3954172_3954361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_144031679.1|3954357_3955107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041748342.1|3955398_3955986_-	hypothetical protein	NA	NA	NA	NA	NA
3955875:3955891	attL	CGATCCTCCTGCCGCCA	NA	NA	NA	NA
WP_015686360.1|3956089_3957460_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_015686360.1|3956089_3957460_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
3963100:3963116	attR	TGGCGGCAGGAGGATCG	NA	NA	NA	NA
>prophage 4
NC_017082	Bradyrhizobium cosmicum, complete genome	7231841	5221809	5230939	7231841		Escherichia_phage(42.86%)	8	NA	NA
WP_015687552.1|5221809_5223498_-	CHASE3 domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	61.0	1.5e-14
WP_015687553.1|5223781_5225473_-	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	61.0	1.5e-14
WP_015687555.1|5225640_5226918_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	42.9	2.8e-74
WP_015687556.1|5226914_5227697_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_015687557.1|5227711_5228629_-	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	49.0	4.9e-68
WP_041748456.1|5228733_5229408_+	aldolase	NA	A0A077SK32	Escherichia_phage	48.8	1.0e-46
WP_015687559.1|5229519_5230224_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.1	3.8e-12
WP_015687560.1|5230207_5230939_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.2	5.7e-11
