The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_017249	Bradyrhizobium japonicum USDA 6, complete genome	9207384	1442396	1449548	9207384		Salmonella_phage(16.67%)	6	NA	NA
WP_014491534.1|1442396_1442861_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.3	6.5e-45
WP_007597501.1|1443074_1443560_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.9	9.9e-20
WP_028170127.1|1443656_1444211_-	DUF924 domain-containing protein	NA	E3T4R4	Cafeteria_roenbergensis_virus	28.8	1.0e-12
WP_014491536.1|1444225_1445911_-	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	26.2	1.1e-41
WP_014491537.1|1446102_1447575_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	34.4	1.1e-26
WP_014491538.1|1447751_1449548_-	glucan ABC transporter ATP-binding protein/ permease	NA	W8CYL7	Bacillus_phage	25.4	9.0e-34
>prophage 2
NC_017249	Bradyrhizobium japonicum USDA 6, complete genome	9207384	5049119	5059305	9207384	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_014495048.1|5049119_5050148_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.0	1.6e-22
WP_014495049.1|5050144_5050984_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.1	3.3e-31
WP_014495050.1|5051005_5051755_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	1.2e-43
WP_014495051.1|5051922_5052159_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.5e-08
WP_014495052.1|5052245_5052785_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_014495053.1|5052781_5053594_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.4	2.4e-55
WP_014495054.1|5053786_5055118_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.8	1.6e-96
WP_014495055.1|5055315_5055678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014495056.1|5055782_5056550_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.4	1.7e-37
WP_014495057.1|5056553_5056925_-	response regulator	NA	NA	NA	NA	NA
WP_039156902.1|5057195_5057813_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.6	2.5e-28
WP_014495059.1|5057922_5059305_+	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	40.9	2.4e-18
>prophage 3
NC_017249	Bradyrhizobium japonicum USDA 6, complete genome	9207384	5289602	5298008	9207384	tRNA,tail	Arthrobacter_phage(28.57%)	9	NA	NA
WP_014495288.1|5289602_5290145_+|tail	tail protein	tail	A0A0U4JXW2	Arthrobacter_phage	36.5	1.1e-16
WP_014495289.1|5290224_5290752_+|tail	phage tail protein	tail	A0A0U4JXW2	Arthrobacter_phage	37.5	2.4e-19
WP_014495290.1|5290800_5291343_+|tail	phage tail protein	tail	E3T4R8	Cafeteria_roenbergensis_virus	31.1	7.7e-13
WP_028169517.1|5291379_5291874_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014495292.1|5291870_5292827_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014495293.1|5292979_5294242_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	35.2	2.2e-50
WP_014495294.1|5294244_5294931_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	38.7	9.7e-29
WP_014495295.1|5294927_5295974_+	DNA polymerase III subunit delta'	NA	S5WKH4	Pseudomonas_phage	27.2	3.7e-11
WP_014495296.1|5296022_5298008_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.6	5.5e-101
>prophage 4
NC_017249	Bradyrhizobium japonicum USDA 6, complete genome	9207384	7011866	7022474	9207384		Escherichia_phage(42.86%)	8	NA	NA
WP_014496889.1|7011866_7015046_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.8	8.1e-70
WP_014496890.1|7015289_7016981_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	53.1	3.0e-15
WP_014496891.1|7017151_7018429_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	41.2	1.7e-71
WP_014496892.1|7018425_7019208_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_014496893.1|7019224_7020142_-	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	49.8	1.1e-67
WP_028169752.1|7020247_7020931_+	aldolase	NA	A0A077SK32	Escherichia_phage	49.3	5.1e-46
WP_014496895.1|7021054_7021759_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	2.9e-12
WP_014496896.1|7021742_7022474_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.2	1.5e-11
>prophage 5
NC_017249	Bradyrhizobium japonicum USDA 6, complete genome	9207384	8094732	8144981	9207384	transposase	Paenibacillus_phage(50.0%)	37	NA	NA
WP_110115808.1|8094732_8095491_+|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_014497816.1|8095531_8096425_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084818.1|8097058_8098051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014497819.1|8098637_8098847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071917715.1|8099005_8099683_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_028154217.1|8100107_8100398_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_071916446.1|8100471_8101098_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014497821.1|8102576_8102939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084811.1|8103902_8104148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497822.1|8104970_8105696_+	porin family protein	NA	NA	NA	NA	NA
WP_108914088.1|8106043_8106169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497825.1|8107427_8108144_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_014497827.1|8109786_8111124_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_011084803.1|8111532_8112051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161170727.1|8112464_8112821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084800.1|8113265_8114936_+	carbohydrate porin	NA	NA	NA	NA	NA
WP_011084799.1|8115067_8115448_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014497829.1|8115455_8116091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497831.1|8118306_8119251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084794.1|8121434_8122475_-	pectinesterase	NA	NA	NA	NA	NA
WP_011084793.1|8122693_8124226_-	polygalacturonase	NA	NA	NA	NA	NA
WP_011084792.1|8124942_8125260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084791.1|8125747_8126917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497835.1|8126919_8130354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497836.1|8130350_8130989_-	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_028143997.1|8130978_8132535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043900307.1|8132731_8133796_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084786.1|8134099_8134351_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011084785.1|8134350_8135670_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_011084781.1|8137129_8137495_+	Nif11 family protein	NA	NA	NA	NA	NA
WP_028143999.1|8138211_8138679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084778.1|8138725_8139118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497841.1|8139818_8141798_+	RiPP maturation radical SAM protein 1	NA	NA	NA	NA	NA
WP_011084776.1|8142111_8142339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497842.1|8142722_8144069_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	42.1	1.4e-44
WP_014497843.1|8144445_8144601_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084772.1|8144681_8144981_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 6
NC_017249	Bradyrhizobium japonicum USDA 6, complete genome	9207384	8157978	8247836	9207384	transposase	Paenibacillus_phage(20.0%)	55	NA	NA
WP_144038025.1|8157978_8158739_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	2.1e-08
WP_028144470.1|8159159_8159996_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084514.1|8160013_8161078_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_014497856.1|8164442_8164895_+	GNAT family N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	26.9	8.6e-10
WP_014497858.1|8165598_8165769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039145738.1|8165825_8167583_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
WP_014497862.1|8169010_8169460_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014497863.1|8169675_8170746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039229681.1|8171490_8171892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497865.1|8173373_8174516_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_028170445.1|8175048_8175810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497867.1|8176433_8176637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497868.1|8176746_8177529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039229687.1|8177809_8178217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141379392.1|8178539_8179016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497871.1|8180216_8180396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080593923.1|8180429_8180762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080593924.1|8180854_8181313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497873.1|8181556_8182522_-	D-2-hydroxyacid dehydrogenase	NA	M1I636	Acanthocystis_turfacea_Chlorella_virus	27.4	2.4e-09
WP_014497875.1|8182975_8184376_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_028170442.1|8184387_8185866_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_014497877.1|8186054_8186531_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_141379390.1|8187229_8188312_-	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.1	2.9e-27
WP_014497879.1|8188367_8189084_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014497881.1|8190041_8190347_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	52.4	2.4e-19
WP_014497882.1|8190330_8190735_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_080593926.1|8192675_8193038_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_014497887.1|8192959_8193691_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_014497888.1|8193687_8194407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497889.1|8194408_8197078_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA	NA
WP_014497890.1|8197097_8197712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497891.1|8197718_8198675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160321084.1|8198691_8199429_-	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_014497893.1|8200867_8201293_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014497894.1|8201866_8202961_-	KamA family radical SAM protein	NA	NA	NA	NA	NA
WP_014497898.1|8207712_8209077_-	insulinase family protein	NA	NA	NA	NA	NA
WP_038945462.1|8209073_8210471_-	insulinase family protein	NA	A0A2L2DIR8	Acanthamoeba_polyphaga_mimivirus	24.1	1.3e-27
WP_074076609.1|8211276_8212122_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.6	7.2e-34
WP_080588823.1|8212082_8213633_-|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
WP_028170463.1|8214665_8216498_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.7	4.9e-27
WP_014497906.1|8220725_8220896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084689.1|8221031_8221307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084688.1|8221991_8223446_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_011084685.1|8225739_8226501_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084684.1|8227625_8228240_-	J domain-containing protein	NA	NA	NA	NA	NA
WP_011084682.1|8229646_8230975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084680.1|8231659_8232076_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_144038027.1|8232815_8233576_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	1.2e-08
WP_011084678.1|8233958_8235767_+	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_014497914.1|8237923_8238499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028170457.1|8241766_8243158_+	MFS transporter	NA	NA	NA	NA	NA
WP_011084665.1|8244769_8245315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084664.1|8245422_8245806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084662.1|8246389_8246683_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011084661.1|8246825_8247836_+|transposase	IS481 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	64.8	1.1e-126
>prophage 7
NC_017249	Bradyrhizobium japonicum USDA 6, complete genome	9207384	8315789	8378033	9207384	transposase	Mycobacterium_phage(28.57%)	53	NA	NA
WP_014497957.1|8315789_8317058_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	7.1e-94
WP_011084586.1|8318086_8318641_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_011084585.1|8318647_8319196_+	alkyl hydroperoxide reductase AhpD	NA	NA	NA	NA	NA
WP_011084584.1|8319407_8319704_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_011084583.1|8319742_8321050_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014497958.1|8321061_8322171_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_011084580.1|8323121_8323463_-	nitrogenase stabilizing/protective protein NifW	NA	NA	NA	NA	NA
WP_011084579.1|8324117_8324936_-	nitrogen fixation protein NifQ	NA	NA	NA	NA	NA
WP_011084578.1|8325040_8325925_-	nitrogenase iron protein	NA	NA	NA	NA	NA
WP_161170736.1|8326106_8326418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084576.1|8326492_8326918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018647470.1|8327127_8327871_+	OmpW family protein	NA	NA	NA	NA	NA
WP_011084574.1|8328276_8328624_-	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_011084572.1|8329343_8329688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497964.1|8329721_8330081_-	DUF3024 domain-containing protein	NA	NA	NA	NA	NA
WP_014497965.1|8330019_8330337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497966.1|8330333_8330648_-	nitrogen fixation protein NifZ	NA	NA	NA	NA	NA
WP_011084569.1|8330898_8331123_-	ferredoxin-like protein in nif region	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	47.7	2.0e-07
WP_041960893.1|8331133_8332693_-	nitrogenase cofactor biosynthesis protein NifB	NA	NA	NA	NA	NA
WP_011084566.1|8333380_8333605_-	putative nitrogen fixation protein NifT	NA	NA	NA	NA	NA
WP_011084565.1|8333601_8334783_-	cysteine desulfurase NifS	NA	H7BUW1	unidentified_phage	37.9	1.1e-35
WP_131234256.1|8334779_8335073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084564.1|8335106_8335427_-	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA	NA
WP_014497969.1|8335686_8336277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084562.1|8336298_8336682_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_014497970.1|8337280_8338015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084559.1|8339006_8339300_-	ferredoxin III, nif-specific	NA	NA	NA	NA	NA
WP_026312876.1|8339310_8339505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084557.1|8339524_8339989_-	NifX-associated nitrogen fixation protein	NA	NA	NA	NA	NA
WP_011084556.1|8339995_8340391_-	nitrogen fixation protein NifX	NA	NA	NA	NA	NA
WP_011084555.1|8340387_8341797_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifN	NA	NA	NA	NA	NA
WP_011084554.1|8341806_8343450_-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE	NA	NA	NA	NA	NA
WP_011084553.1|8343542_8345099_-	nitrogenase molybdenum-iron protein subunit beta	NA	NA	NA	NA	NA
WP_011084552.1|8345164_8346667_-	nitrogenase molybdenum-iron protein alpha chain	NA	NA	NA	NA	NA
WP_039228620.1|8348478_8349543_-|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
WP_011084548.1|8349686_8349881_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_011084547.1|8350418_8351531_-	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_028154318.1|8352957_8354100_-	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_011084544.1|8354096_8355842_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_085967575.1|8356125_8357255_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011084541.1|8358103_8358445_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_011084538.1|8359626_8360178_-	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
WP_011084536.1|8361055_8361346_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_014497983.1|8361981_8362674_-	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_011084532.1|8362678_8364469_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_014497984.1|8364482_8365574_-	hydrogenase small subunit	NA	NA	NA	NA	NA
WP_011084529.1|8367928_8369245_+	C4-dicarboxylate transporter DctA	NA	NA	NA	NA	NA
WP_085967392.1|8369367_8370128_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
WP_011084514.1|8370203_8371268_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084527.1|8372146_8374816_+	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	25.0	1.9e-08
WP_011084526.1|8374812_8375496_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_014497989.1|8375580_8375967_+	response regulator	NA	NA	NA	NA	NA
WP_014497990.1|8376764_8378033_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	7.1e-94
>prophage 8
NC_017249	Bradyrhizobium japonicum USDA 6, complete genome	9207384	8389615	8455680	9207384	transposase,integrase	Acidithiobacillus_phage(22.22%)	45	8452492:8452510	8471124:8471142
WP_011084514.1|8389615_8390680_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_028144469.1|8390653_8391952_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_014497998.1|8392165_8393713_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	38.4	1.8e-83
WP_011090953.1|8393766_8394123_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011084509.1|8394673_8395018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497999.1|8395542_8395764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498000.1|8396333_8396591_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_014497929.1|8402667_8403378_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.6	4.8e-63
WP_014498004.1|8405574_8405916_+	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA	NA
WP_011084500.1|8405912_8406416_+	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA	NA
WP_014498006.1|8407140_8408520_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_014498007.1|8408845_8409034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084497.1|8409969_8410284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084496.1|8410280_8410571_-	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_144038029.1|8411043_8411804_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	34.7	2.7e-08
WP_014498011.1|8411969_8412632_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014498012.1|8412628_8413144_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_011084490.1|8413802_8415665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080593929.1|8418323_8418533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028160640.1|8419089_8419590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498020.1|8420315_8421071_+|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_014498022.1|8422179_8422944_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_014498023.1|8422940_8424215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498024.1|8424211_8425093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028160578.1|8425073_8426954_-	ATPase	NA	NA	NA	NA	NA
WP_014498028.1|8428961_8430167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080588800.1|8430163_8431888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498031.1|8433172_8433619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161170738.1|8433657_8434101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498033.1|8434921_8435413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084471.1|8436373_8437180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161170739.1|8437468_8438200_-|transposase	IS6 family transposase	transposase	NA	NA	NA	NA
WP_014498036.1|8438617_8438917_+	hypothetical protein	NA	A0A291AUP1	Sinorhizobium_phage	34.7	4.1e-08
WP_011084467.1|8439545_8439749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498039.1|8440463_8442002_-	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_085965834.1|8444299_8445060_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	2.1e-08
WP_014498042.1|8445493_8445685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084459.1|8446021_8446828_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_011084458.1|8447102_8447909_+	hypothetical protein	NA	A0A023NHS3	Nitrincola_phage	30.1	1.0e-05
WP_014497929.1|8449422_8450133_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.6	4.8e-63
WP_014498044.1|8450874_8451363_-	hypothetical protein	NA	NA	NA	NA	NA
8452492:8452510	attL	GCAGTGCGGATGCGGCAGG	NA	NA	NA	NA
WP_018647863.1|8453020_8453236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080584307.1|8454181_8454370_-	plasmid maintenance system killer protein	NA	A0A2L1IV28	Escherichia_phage	36.7	1.6e-05
WP_011084451.1|8454934_8455252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084450.1|8455269_8455680_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9SGU9	Bradyrhizobium_phage	36.6	1.1e-06
8471124:8471142	attR	CCTGCCGCATCCGCACTGC	NA	NA	NA	NA
>prophage 9
NC_017249	Bradyrhizobium japonicum USDA 6, complete genome	9207384	9113995	9150696	9207384	transposase,integrase	Klebsiella_phage(20.0%)	28	9109791:9109806	9152700:9152715
9109791:9109806	attL	CGCGGTCGATCATCGC	NA	NA	NA	NA
WP_011090895.1|9113995_9115237_+|integrase	site-specific integrase	integrase	A0A248SL35	Klebsiella_phage	66.8	1.9e-160
WP_014498593.1|9115233_9116577_+	DUF1016 domain-containing protein	NA	Q9JMP5	Wolbachia_phage	55.5	6.2e-112
WP_011090897.1|9116578_9117832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090898.1|9117922_9120412_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014498594.1|9120408_9120633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498595.1|9120722_9121499_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498596.1|9121685_9122240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498597.1|9122358_9124146_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011085265.1|9124186_9125296_+|transposase	IS630-like element ISBj5 family transposase	transposase	NA	NA	NA	NA
WP_014498598.1|9125306_9126071_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	49.0	4.7e-24
WP_011088795.1|9126629_9127694_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_009734588.1|9127951_9128536_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_014498601.1|9129567_9130215_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_011090906.1|9130319_9131198_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011090907.1|9131194_9132043_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_026192141.1|9132148_9132679_+	VOC family protein	NA	NA	NA	NA	NA
WP_016846434.1|9132966_9133251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498603.1|9133714_9134068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498605.1|9135701_9135986_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498606.1|9136310_9136640_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014498607.1|9136659_9137544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498608.1|9138010_9138676_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_011090914.1|9143334_9144666_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_011090915.1|9144598_9145435_-	porin family protein	NA	NA	NA	NA	NA
WP_011090916.1|9145878_9146547_+	AAA family ATPase	NA	A2I303	Vibrio_virus	32.7	1.5e-10
WP_014498616.1|9146734_9147547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090918.1|9147551_9148415_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	37.2	8.1e-33
WP_011084703.1|9149184_9150696_-|transposase	ISNCY-like element ISBj12 family transposase	transposase	NA	NA	NA	NA
9152700:9152715	attR	CGCGGTCGATCATCGC	NA	NA	NA	NA
