assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000284495.1_ASM28449v1	NC_011993	Escherichia coli LF82, complete genome	1	143715-143798	1	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	Orphan	ACGCCGCATCCGGCACGAACAAA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	NA,NA	NA|888aa|up_9|NC_011993.1_128001_130665_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|631aa|up_8|NC_011993.1_130679_132572_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|475aa|up_7|NC_011993.1_132779_134204_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|582aa|up_6|NC_011993.1_134445_136191_-	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|866aa|up_5|NC_011993.1_136545_139143_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|121aa|up_4|NC_011993.1_139317_139680_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|265aa|up_3|NC_011993.1_139717_140512_-	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|289aa|up_2|NC_011993.1_140527_141394_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|116aa|up_1|NC_011993.1_141499_141847_-	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|517aa|up_0|NC_011993.1_142012_143563_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|797aa|down_0|NC_011993.1_143827_146218_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|179aa|down_1|NC_011993.1_146423_146960_+	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|221aa|down_2|NC_011993.1_147000_147663_-	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|309aa|down_3|NC_011993.1_147771_148698_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|257aa|down_4|NC_011993.1_148694_149465_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|147aa|down_5|NC_011993.1_149569_150010_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|410aa|down_6|NC_011993.1_150073_151303_+	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|127aa|down_7|NC_011993.1_151306_151687_-	TIGR00223, Aspartate_1-decarboxylase, L-aspartate-alpha-decarboxylase	NA|295aa|down_8|NC_011993.1_151960_152845_+	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|284aa|down_9|NC_011993.1_152926_153778_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed
GCF_000284495.1_ASM28449v1	NC_011993	Escherichia coli LF82, complete genome	2	877323-877890	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	8,9,9	9	TypeI-F	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	NA,NA	NA|551aa|up_9|NC_011993.1_863731_865384_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NC_011993.1_865527_866427_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NC_011993.1_866921_867617_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NC_011993.1_868042_869701_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NC_011993.1_869697_870654_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NC_011993.1_870804_871920_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NC_011993.1_871916_873863_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NC_011993.1_873935_874160_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NC_011993.1_874482_874803_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NC_011993.1_874833_877110_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NC_011993.1_878062_879046_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NC_011993.1_879042_882276_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|NC_011993.1_882605_883913_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|down_3|NC_011993.1_883909_884833_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|down_4|NC_011993.1_884843_885845_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NC_011993.1_885855_886410_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_6|NC_011993.1_888411_888630_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_7|NC_011993.1_888914_889619_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_8|NC_011993.1_889660_891382_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_9|NC_011993.1_891382_893149_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
GCF_000284495.1_ASM28449v1	NC_011993	Escherichia coli LF82, complete genome	3	886950-888299	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	21,22,22	22	TypeI-F	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	NA,NA	NA|649aa|up_9|NC_011993.1_871916_873863_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_8|NC_011993.1_873935_874160_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_7|NC_011993.1_874482_874803_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_6|NC_011993.1_874833_877110_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_5|NC_011993.1_878062_879046_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_4|NC_011993.1_879042_882276_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_3|NC_011993.1_882605_883913_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|up_2|NC_011993.1_883909_884833_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|up_1|NC_011993.1_884843_885845_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NC_011993.1_885855_886410_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NC_011993.1_888411_888630_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NC_011993.1_888914_889619_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NC_011993.1_889660_891382_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NC_011993.1_891382_893149_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NC_011993.1_893271_894237_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NC_011993.1_894780_895275_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1351aa|down_6|NC_011993.1_895409_899462_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NC_011993.1_899620_900232_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NC_011993.1_900242_901586_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NC_011993.1_901676_902969_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_000284495.1_ASM28449v1	NC_011993	Escherichia coli LF82, complete genome	4	2361568-2361681	4	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	Orphan	TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	NA,NA	NA|395aa|up_9|NC_011993.1_2340470_2341655_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NC_011993.1_2341728_2342505_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NC_011993.1_2342509_2344159_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NC_011993.1_2344159_2348554_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NC_011993.1_2348697_2349321_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NC_011993.1_2349317_2351006_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NC_011993.1_2351154_2353782_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NC_011993.1_2353928_2354651_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1253aa|up_1|NC_011993.1_2354790_2358549_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NC_011993.1_2359230_2361516_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NC_011993.1_2361705_2362836_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NC_011993.1_2362835_2363090_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NC_011993.1_2363143_2363794_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NC_011993.1_2363996_2365073_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NC_011993.1_2365077_2366436_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NC_011993.1_2366708_2368337_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NC_011993.1_2368326_2369586_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NC_011993.1_2369582_2370773_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|320aa|down_8|NC_011993.1_2370965_2371925_+	PRK09956, PRK09956, ISNCY family transposase	NA|66aa|down_9|NC_011993.1_2371937_2372135_+	PRK09956, PRK09956, ISNCY family transposase
GCF_000284495.1_ASM28449v1	NC_011993	Escherichia coli LF82, complete genome	5	4634558-4634697	5	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	NA,NA	NA|335aa|up_9|NC_011993.1_4623102_4624107_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|NC_011993.1_4624117_4625062_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NC_011993.1_4625072_4626293_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NC_011993.1_4626970_4627423_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NC_011993.1_4627467_4628472_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NC_011993.1_4628633_4629050_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NC_011993.1_4629227_4629731_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NC_011993.1_4629923_4631111_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NC_011993.1_4631157_4634013_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NC_011993.1_4634012_4634456_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NC_011993.1_4634713_4636225_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NC_011993.1_4636491_4637592_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NC_011993.1_4637591_4638674_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NC_011993.1_4638834_4640337_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NC_011993.1_4640414_4641413_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NC_011993.1_4641479_4642799_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NC_011993.1_4642863_4643628_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NC_011993.1_4643651_4644683_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NC_011993.1_4644899_4645463_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NC_011993.1_4645466_4646486_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
