bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	401826	401853	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	401826-401853	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	625606	625633	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	625606-625633	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	795564	795537	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	795537-795564	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	1035591	1035564	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1035564-1035591	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	1325643	1325670	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1325643-1325670	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	1414415	1414388	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1414388-1414415	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	1657745	1657718	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1657718-1657745	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	1872217	1872244	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1872217-1872244	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	1981007	1980980	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1980980-1981007	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	2334267	2334240	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2334240-2334267	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	28	0	0	1	28	2676242	2676269	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2676242-2676269	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	96.43	28	1	0	1	28	361733	361760	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-06	42.8	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	361733-361760	GAATTTCGAAAAGAAATTCTACAAGCAA	1
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	96.43	28	1	0	1	28	909858	909831	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-06	42.8	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	909831-909858	TTGCTTGTAGAATTTCTTTTCGAAATTC	1
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	92.86	28	2	0	1	28	1111818	1111845	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1111818-1111845	GAATTTCAAAAAGAAATTCTACAGACAA	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	92.86	28	2	0	1	28	1777211	1777238	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1777211-1777238	GAATTTCGAAAAGAAATTCTACAAACAA	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	92.86	28	2	0	1	28	1990357	1990330	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1990330-1990357	TTGTCTGTAGAATTTCCTTTCGAAATTC	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	92.86	28	2	0	1	28	2345075	2345048	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2345048-2345075	TTGTCTGTAGAATTTCTTTTTGAAATTC	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.1|285663|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	92.86	28	2	0	1	28	2793133	2793106	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2793106-2793133	TTGTTTGTAGAATTTCTTTTCGAAATTC	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	29	0	0	1	29	285607	285635	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	285607-285635	AGCTGGCGGAAAGTCAGCTTACAATAATG	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	29	0	0	1	29	804544	804516	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	804516-804544	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	29	0	0	1	29	1009617	1009589	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1009589-1009617	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	29	0	0	1	29	2514521	2514493	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	2514493-2514521	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	29	0	0	1	29	2514577	2514549	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	6e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	2514549-2514577	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	96.55	29	1	0	1	29	2182977	2183005	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	5e-07	44.4	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	2182977-2183005	AGCTGGCGGAAAGTCAGCTTACATTAATG	1
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	361677	361705	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	361677-361705	AGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	625718	625746	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	625718-625746	AGCTGGCGAAAAGACAGCTTACAATAATG	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	1035649	1035621	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1035621-1035649	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	1111760	1111788	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1111760-1111788	AGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	1325701	1325729	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1325701-1325729	AGCTGACGAAAAGTCAGCTTACAATAATG	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	1414473	1414445	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1414445-1414473	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	1657690	1657662	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1657662-1657690	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	1657803	1657775	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1657775-1657803	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	1672278	1672250	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1672250-1672278	CATTATTGTAAGCTGTCTTTTCGCCAGCT	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	1.2|285718|29|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	93.10	29	2	0	1	29	1979665	1979637	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1979637-1979665	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	2.1|625644|28|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	96.43	28	1	0	1	28	1979626	1979599	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-06	42.8	1.0	GGTGTGGGCCCCAACACAGAGAATTTCA	1979599-1979626	TGAAATTCTCTATGTTGGGGCCCACACC	1
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	4.1|1979540|26|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	26	0	0	1	26	795557	795582	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-06	42.8	1.0	CGAAATTCTCTGTGTTGGGGCCCACA	795557-795582	CGAAATTCTCTGTGTTGGGGCCCACA	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	4.1|1979540|26|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	26	0	0	1	26	1981000	1981025	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-06	42.8	1.0	CGAAATTCTCTGTGTTGGGGCCCACA	1981000-1981025	CGAAATTCTCTGTGTTGGGGCCCACA	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	4.1|1979540|26|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	100.00	26	0	0	1	26	2334260	2334285	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	1e-06	42.8	1.0	CGAAATTCTCTGTGTTGGGGCCCACA	2334260-2334285	CGAAATTCTCTGTGTTGGGGCCCACA	0
NC_017763	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	7.1|2676282|34|NC_017763|CRISPRCasFinder	NC_017763.1	Staphylococcus aureus subsp. aureus HO 5096 0412, complete genome	94.12	34	2	0	1	34	1009576	1009543	285636-285773|625614-625701|909847-909931|1979508-1979597|2307938-2308062|2550434-2550517|2676258-2676339	4e-08	49.1	1.0	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	1009543-1009576	ATTGGAAATCCAATTCCTCTTTGTTGGGGCCCAT	2
