assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000284635.1_ASM28463v1	NC_017761	Helicobacter cinaedi PAGU611, complete genome	1	155005-155128	1	PILER-CR	no		WYL,DEDDh,cas3,cas2,cas1,cas9,csx23,cas10,csm3gr7,csx19	Orphan	ATTCTTATGGAGAGTTTG	18	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,cas3,cas2,cas1,cas9,csx23,cas10,csm3gr7,csx19	NA|105aa|up_7|NC_017761.1_147669_147984_-,NA|83aa|up_6|NC_017761.1_148368_148617_-,NA|76aa|down_0|NC_017761.1_160793_161021_+,NA|473aa|down_1|NC_017761.1_162102_163521_+,NA|206aa|down_5|NC_017761.1_166840_167458_+	NA|84aa|up_9|NC_017761.1_146780_147032_-	pfam00520, Ion_trans, Ion transport protein	NA|180aa|up_8|NC_017761.1_146995_147535_-	pfam00520, Ion_trans, Ion transport protein	NA|105aa|up_7|NC_017761.1_147669_147984_-	NA	NA|83aa|up_6|NC_017761.1_148368_148617_-	NA	NA|119aa|up_5|NC_017761.1_149336_149693_-	pfam05154, TM2, TM2 domain	NA|265aa|up_4|NC_017761.1_149821_150616_+	cd00331, IGPS, Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water	NA|84aa|up_3|NC_017761.1_150675_150927_+	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	NA|491aa|up_2|NC_017761.1_150926_152399_+	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|356aa|up_1|NC_017761.1_152400_153468_+	TIGR02193, LIPOPOLYSACCHARIDE_HEPTOSYLTRANSFERASE-1, lipopolysaccharide heptosyltransferase I	NA|305aa|up_0|NC_017761.1_153464_154379_+	PRK08419, PRK08419, lipid A biosynthesis lauroyl acyltransferase; Reviewed	NA|76aa|down_0|NC_017761.1_160793_161021_+	NA	NA|473aa|down_1|NC_017761.1_162102_163521_+	NA	NA|478aa|down_2|NC_017761.1_163495_164929_+	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins	NA|364aa|down_3|NC_017761.1_164932_166024_+	PRK10073, PRK10073, putative glycosyl transferase; Provisional	NA|237aa|down_4|NC_017761.1_166112_166823_+	COG3018, COG3018, Uncharacterized protein conserved in bacteria [Function unknown]	NA|206aa|down_5|NC_017761.1_166840_167458_+	NA	NA|329aa|down_6|NC_017761.1_167587_168574_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|148aa|down_7|NC_017761.1_168574_169018_+	pfam10788, DUF2603, Protein of unknown function (DUF2603)	NA|458aa|down_8|NC_017761.1_169050_170424_+	PRK09249, PRK09249, coproporphyrinogen dehydrogenase	NA|438aa|down_9|NC_017761.1_170432_171746_+	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]
GCF_000284635.1_ASM28463v1	NC_017761	Helicobacter cinaedi PAGU611, complete genome	2	538864-538987	2	PILER-CR	no		WYL,DEDDh,cas3,cas2,cas1,cas9,csx23,cas10,csm3gr7,csx19	Orphan	ATTCTTATGGAGAGTTTG	18	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,cas3,cas2,cas1,cas9,csx23,cas10,csm3gr7,csx19	NA|182aa|up_9|NC_017761.1_529794_530340_+,NA|76aa|down_0|NC_017761.1_544651_544879_+,NA|95aa|down_9|NC_017761.1_553709_553994_-	NA|182aa|up_9|NC_017761.1_529794_530340_+	NA	NA|808aa|up_8|NC_017761.1_530336_532760_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|296aa|up_7|NC_017761.1_532852_533740_-	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)	NA|55aa|up_6|NC_017761.1_533746_533911_-	pfam02724, CDC45, CDC45-like protein	NA|228aa|up_5|NC_017761.1_533903_534587_-	cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E	NA|263aa|up_4|NC_017761.1_534583_535372_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|290aa|up_3|NC_017761.1_535381_536251_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|353aa|up_2|NC_017761.1_536259_537318_-	pfam13180, PDZ_2, PDZ domain	NA|108aa|up_1|NC_017761.1_537310_537634_-	PRK03762, PRK03762, YbaB/EbfC family nucleoid-associated protein	NA|121aa|up_0|NC_017761.1_537635_537998_-	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|76aa|down_0|NC_017761.1_544651_544879_+	NA	NA|171aa|down_1|NC_017761.1_545545_546058_+	pfam08020, DUF1706, Protein of unknown function (DUF1706)	NA|295aa|down_2|NC_017761.1_546081_546966_-	pfam04305, DUF455, Protein of unknown function (DUF455)	NA|383aa|down_3|NC_017761.1_546965_548114_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|403aa|down_4|NC_017761.1_548130_549339_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|494aa|down_5|NC_017761.1_549386_550868_-	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|355aa|down_6|NC_017761.1_550870_551935_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|255aa|down_7|NC_017761.1_551949_552714_-	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation	NA|279aa|down_8|NC_017761.1_552715_553552_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|95aa|down_9|NC_017761.1_553709_553994_-	NA
GCF_000284635.1_ASM28463v1	NC_017761	Helicobacter cinaedi PAGU611, complete genome	3	1346374-1347400	1,1,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas9	WYL,DEDDh,cas3,cas2,cas1,cas9,csx23,cas10,csm3gr7,csx19	 or Type II-C?, Type II-B,Type II-A,Type II-C,Type II-B	GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT,GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT,GTTTTAGTCCCTTCTTAAACTTCTATATGCTAGAAT	36,36,36	2	2	1347203-1347232|1347269-1347298	NC_017761.1_1657414-1657443|NC_017761.1_1657414-1657443	NA:NA:NA	15,15,11	15	orTypeII-C?,TypeII-B,TypeII-A,TypeII-C,TypeII-B	WYL,DEDDh,cas3,cas2,cas1,cas9,csx23,cas10,csm3gr7,csx19	NA|76aa|up_9|NC_017761.1_1338601_1338829_-,NA|100aa|up_8|NC_017761.1_1338738_1339038_-,NA|113aa|up_6|NC_017761.1_1340371_1340710_-,NA|159aa|up_5|NC_017761.1_1340823_1341300_-,NA|46aa|up_4|NC_017761.1_1341784_1341922_-,NA|156aa|up_3|NC_017761.1_1341931_1342399_-,NA|303aa|up_2|NC_017761.1_1342547_1343456_-,NA|106aa|up_1|NC_017761.1_1345716_1346034_-,NA|73aa|up_0|NC_017761.1_1346123_1346342_-,NA|113aa|down_3|NC_017761.1_1354738_1355077_-,NA|271aa|down_4|NC_017761.1_1355081_1355894_-,NA|46aa|down_5|NC_017761.1_1355906_1356044_-,NA|190aa|down_9|NC_017761.1_1361792_1362362_-	NA|76aa|up_9|NC_017761.1_1338601_1338829_-	NA	NA|100aa|up_8|NC_017761.1_1338738_1339038_-	NA	NA|124aa|up_7|NC_017761.1_1340003_1340375_-	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown]	NA|113aa|up_6|NC_017761.1_1340371_1340710_-	NA	NA|159aa|up_5|NC_017761.1_1340823_1341300_-	NA	NA|46aa|up_4|NC_017761.1_1341784_1341922_-	NA	NA|156aa|up_3|NC_017761.1_1341931_1342399_-	NA	NA|303aa|up_2|NC_017761.1_1342547_1343456_-	NA	NA|106aa|up_1|NC_017761.1_1345716_1346034_-	NA	NA|73aa|up_0|NC_017761.1_1346123_1346342_-	NA	cas2|145aa|down_0|NC_017761.1_1347557_1347992_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|299aa|down_1|NC_017761.1_1348002_1348899_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1024aa|down_2|NC_017761.1_1348900_1351972_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|113aa|down_3|NC_017761.1_1354738_1355077_-	NA	NA|271aa|down_4|NC_017761.1_1355081_1355894_-	NA	NA|46aa|down_5|NC_017761.1_1355906_1356044_-	NA	NA|993aa|down_6|NC_017761.1_1356115_1359094_-	PRK15483, PRK15483, type III restriction-modification system endonuclease	NA|632aa|down_7|NC_017761.1_1359093_1360989_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|131aa|down_8|NC_017761.1_1361229_1361622_+	cd10436, GIY-YIG_EndoII_Hpy188I_like, Catalytic GIY-YIG domain of coliphage T4 non-specific endonuclease II, type II restriction endonuclease R	NA|190aa|down_9|NC_017761.1_1361792_1362362_-	NA
GCF_000284635.1_ASM28463v1	NC_017761	Helicobacter cinaedi PAGU611, complete genome	4	1748910-1749409	2,4	CRISPRCasFinder,PILER-CR	no	csx23,cas10,csm3gr7,csx19	WYL,DEDDh,cas3,cas2,cas1,cas9,csx23,cas10,csm3gr7,csx19	Type III-A,Type III-B,Type III-D,Type III-C	GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC,GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAACTA	36,38	6	6	1748946-1748975|1749012-1749041|1749078-1749107|1749144-1749173|1749210-1749239|1749212-1749239	NC_017761.1_1851447-1851476|NC_017761.1_1851447-1851476|NC_017761.1_1851447-1851476|NC_017761.1_1923220-1923249|NC_017761.1_47260-47289|NC_017761.1_47262-47289	NA:NA	7,3	7	TypeIII-A,TypeIII-B,TypeIII-D,TypeIII-C	WYL,DEDDh,cas3,cas2,cas1,cas9,csx23,cas10,csm3gr7,csx19	csx23|108aa|up_8|NC_017761.1_1740352_1740676_+,cas10|93aa|up_7|NC_017761.1_1741490_1741769_+,NA|226aa|down_6|NC_017761.1_1757186_1757864_-	NA|275aa|up_9|NC_017761.1_1737777_1738602_-	pfam06300, Tsp45I, Tsp45I type II restriction enzyme	csx23|108aa|up_8|NC_017761.1_1740352_1740676_+	NA	cas10|93aa|up_7|NC_017761.1_1741490_1741769_+	NA	cas10|368aa|up_6|NC_017761.1_1741781_1742885_+	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B	csm3gr7|261aa|up_5|NC_017761.1_1742900_1743683_+	pfam03787, RAMPs, RAMP superfamily	csx19|145aa|up_4|NC_017761.1_1743663_1744098_+	TIGR04423, predicted_protein, CRISPR type III-associated protein, TIGR04423 family	csm3gr7|594aa|up_3|NC_017761.1_1744090_1745872_+	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein	NA|259aa|up_2|NC_017761.1_1746378_1747155_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|201aa|up_1|NC_017761.1_1747149_1747752_-	PRK13413, mpi, master DNA invertase Mpi family serine-type recombinase	NA|209aa|up_0|NC_017761.1_1747779_1748406_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|470aa|down_0|NC_017761.1_1749650_1751060_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|382aa|down_1|NC_017761.1_1751068_1752214_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|184aa|down_2|NC_017761.1_1752210_1752762_-	pfam04368, DUF507, Protein of unknown function (DUF507)	NA|671aa|down_3|NC_017761.1_1752825_1754838_-	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|461aa|down_4|NC_017761.1_1754871_1756254_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|152aa|down_5|NC_017761.1_1756530_1756986_+	pfam01475, FUR, Ferric uptake regulator family	NA|226aa|down_6|NC_017761.1_1757186_1757864_-	NA	NA|432aa|down_7|NC_017761.1_1757870_1759166_-	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|413aa|down_8|NC_017761.1_1759184_1760423_-	PRK08526, PRK08526, threonine dehydratase; Provisional	NA|307aa|down_9|NC_017761.1_1760433_1761354_-	pfam00892, EamA, EamA-like transporter family
