The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_018609	Riemerella anatipestifer RA-CH-1, complete sequence	2309519	1225355	1232355	2309519		Enterobacteria_phage(33.33%)	8	NA	NA
WP_154474128.1|1225355_1226489_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	24.0	3.1e-16
WP_004918306.1|1226644_1227229_+	sugar transferase	NA	NA	NA	NA	NA
WP_013446885.1|1227261_1227807_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	49.1	6.1e-42
WP_041320522.1|1227817_1228900_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	48.4	1.4e-85
WP_014938085.1|1228904_1229762_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	H9NC64	Sphingomonas_phage	62.5	6.5e-99
WP_014938086.1|1229867_1231172_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_041320524.1|1231182_1231674_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	42.5	1.6e-30
WP_041320526.1|1231749_1232355_+	LemA family protein	NA	A0A1X9IGG1	Lactococcus_phage	31.0	2.1e-11
>prophage 2
NC_018609	Riemerella anatipestifer RA-CH-1, complete sequence	2309519	1386916	1454787	2309519	integrase,portal,capsid,transposase,tRNA,tail	Riemerella_phage(66.67%)	61	1388956:1388971	1404529:1404544
WP_014938243.1|1386916_1391317_+|tail	phage tail tape measure protein	tail	A0A1B0WMP0	Flavobacterium_phage	30.5	6.0e-148
1388956:1388971	attL	CGAAACTTTAATAAGA	NA	NA	NA	NA
WP_014938244.1|1391318_1392857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014938245.1|1392847_1395409_+	hypothetical protein	NA	R9VYC9	Flavobacterium_phage	31.0	1.4e-64
WP_014938246.1|1395405_1396578_-|integrase	site-specific integrase	integrase	A0A1B0WMK0	Flavobacterium_phage	48.2	2.3e-38
WP_014938247.1|1396920_1398744_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_014938248.1|1398758_1400003_-	aspartate kinase	NA	NA	NA	NA	NA
WP_014938249.1|1400193_1401210_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	43.8	1.6e-67
WP_038693923.1|1401209_1402217_+	o-succinylbenzoate synthase	NA	NA	NA	NA	NA
WP_014938251.1|1402270_1403482_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	29.6	8.5e-28
WP_014938252.1|1403565_1404600_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
1404529:1404544	attR	CGAAACTTTAATAAGA	NA	NA	NA	NA
WP_014938253.1|1404592_1405987_+	bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/3-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA	NA
WP_004918668.1|1405994_1406783_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_004918666.1|1406810_1407374_+	elongation factor P	NA	NA	NA	NA	NA
WP_014938254.1|1407437_1408340_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_004918657.1|1408442_1409315_+	succinate--CoA ligase subunit alpha	NA	NA	NA	NA	NA
WP_014938255.1|1409365_1410082_+	PorT family protein	NA	NA	NA	NA	NA
WP_014938256.1|1410140_1412651_-	peptidase M1	NA	NA	NA	NA	NA
WP_014938257.1|1412696_1413491_-	thymidylate synthase	NA	A6M9A2	Geobacillus_virus	66.7	9.6e-105
WP_014938258.1|1413602_1414166_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA	NA
WP_014938260.1|1414629_1417815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014938261.1|1417946_1418603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014938262.1|1418912_1419776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014938263.1|1419829_1420399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014938264.1|1420475_1421033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014938265.1|1421220_1422198_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_014938266.1|1422213_1422975_+	exodeoxyribonuclease III	NA	A0A0N9QXX6	Chrysochromulina_ericina_virus	37.8	9.7e-38
WP_038693931.1|1423040_1423421_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	53.4	1.6e-20
WP_014938268.1|1423726_1425061_-	trigger factor	NA	NA	NA	NA	NA
WP_014938269.1|1425235_1425886_-	PorT family protein	NA	NA	NA	NA	NA
WP_014938270.1|1425955_1426522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014938271.1|1426559_1428911_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_038693933.1|1429009_1429354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038693935.1|1429495_1430482_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_004916927.1|1430573_1431578_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_079206653.1|1431683_1431812_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_014938274.1|1432928_1433363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014938275.1|1433575_1436368_+	fibronectin type III domain-containing protein	NA	NA	NA	NA	NA
WP_079206649.1|1436423_1436552_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_162037648.1|1436505_1436682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014938277.1|1436872_1437856_-	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA	NA
WP_014938278.1|1437923_1440050_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_014938279.1|1440122_1442270_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	27.4	1.9e-14
WP_014938281.1|1443631_1444990_+|portal	phage portal protein	portal	F5A3C6	Riemerella_phage	96.6	5.2e-244
WP_014938282.1|1444989_1446045_+	hypothetical protein	NA	F5A3C5	Riemerella_phage	97.7	1.7e-197
WP_014614979.1|1446049_1446271_+	hypothetical protein	NA	F5A3C4	Riemerella_phage	100.0	7.1e-34
WP_014938283.1|1446300_1446624_+	hypothetical protein	NA	F5A3C3	Riemerella_phage	93.3	1.1e-48
WP_013447244.1|1446647_1446851_-	hypothetical protein	NA	F5A3C2	Riemerella_phage	98.5	1.0e-31
WP_173002802.1|1447267_1447498_-	hypothetical protein	NA	F5A3C0	Riemerella_phage	90.9	4.4e-10
WP_014938286.1|1447511_1447778_-	hypothetical protein	NA	F5A3B9	Riemerella_phage	96.6	7.3e-41
WP_014938287.1|1447910_1448567_+	hypothetical protein	NA	F5A3B8	Riemerella_phage	96.7	1.5e-79
WP_014938288.1|1448570_1448942_+	hypothetical protein	NA	F5A3B7	Riemerella_phage	95.1	5.7e-60
WP_014938289.1|1448961_1450044_+|capsid	major capsid protein	capsid	F5A3B6	Riemerella_phage	99.4	7.5e-201
WP_014938290.1|1450043_1450367_+	hypothetical protein	NA	F5A3B5	Riemerella_phage	94.4	4.5e-53
WP_014938291.1|1450360_1450684_+	hypothetical protein	NA	F5A3B4	Riemerella_phage	97.2	1.1e-56
WP_014938292.1|1450674_1451118_+	hypothetical protein	NA	F5A3B3	Riemerella_phage	96.6	9.2e-73
WP_014938293.1|1451114_1451525_+	hypothetical protein	NA	F5A3B2	Riemerella_phage	99.3	5.5e-72
WP_014938294.1|1451553_1452057_+	hypothetical protein	NA	F5A3B1	Riemerella_phage	54.6	6.0e-44
WP_014938295.1|1452136_1452598_+	hypothetical protein	NA	F5A3B0	Riemerella_phage	97.4	6.0e-75
WP_014938296.1|1452615_1452801_+	hypothetical protein	NA	F5A3A9	Riemerella_phage	98.4	5.8e-29
WP_014938297.1|1453105_1453939_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_014938298.1|1454094_1454787_-	Ig-like domain-containing protein	NA	F5A3A6	Riemerella_phage	99.1	3.4e-122
>prophage 3
NC_018609	Riemerella anatipestifer RA-CH-1, complete sequence	2309519	1459327	1467226	2309519	tail	Riemerella_phage(100.0%)	10	NA	NA
WP_004917838.1|1459327_1459690_-	helix-turn-helix domain-containing protein	NA	F5A3A3	Riemerella_phage	100.0	4.7e-59
WP_014938300.1|1459686_1459980_-	type II toxin-antitoxin system HigB family toxin	NA	F5A3A2	Riemerella_phage	99.0	2.2e-51
WP_038693955.1|1460036_1460468_+	hypothetical protein	NA	F5A3A1	Riemerella_phage	94.5	3.8e-55
WP_014938302.1|1460464_1461454_+	hypothetical protein	NA	F5A3A0	Riemerella_phage	99.1	3.2e-190
WP_014938303.1|1461441_1464897_+|tail	phage tail protein	tail	F5A399	Riemerella_phage	90.3	0.0e+00
WP_004917828.1|1464923_1465247_+	hypothetical protein	NA	F5A398	Riemerella_phage	100.0	3.8e-52
WP_038693959.1|1465230_1465563_+	hypothetical protein	NA	F5A397	Riemerella_phage	96.4	8.4e-55
WP_014938305.1|1465559_1466081_+	hypothetical protein	NA	F5A396	Riemerella_phage	99.4	6.1e-92
WP_014938306.1|1466070_1466649_+	hypothetical protein	NA	F5A395	Riemerella_phage	93.8	9.1e-89
WP_014938307.1|1466671_1467226_+	N-acetylmuramoyl-L-alanine amidase	NA	E7D0G0	Riemerella_phage	96.7	1.0e-100
