assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000299355.1_ASM29935v1	NC_018664	Gottschalkia acidurici 9a, complete sequence	1	264791-264943	1	CRISPRCasFinder	no		csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	Orphan	AGGACAAAAAAGTCTTGAAACAAGACA	27	0	0	NA	NA	NA	2	2	Orphan	csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	NA|231aa|up_9|NC_018664.1_257651_258344_+,NA|203aa|up_8|NC_018664.1_258586_259195_+,NA	NA|231aa|up_9|NC_018664.1_257651_258344_+	NA	NA|203aa|up_8|NC_018664.1_258586_259195_+	NA	NA|66aa|up_7|NC_018664.1_259210_259408_+	pfam14070, YjfB_motility, Putative motility protein	NA|116aa|up_6|NC_018664.1_259528_259876_+	TIGR03826, YvyF, flagellar operon protein TIGR03826	NA|110aa|up_5|NC_018664.1_259931_260261_+	TIGR03826, YvyF, flagellar operon protein TIGR03826	NA|128aa|up_4|NC_018664.1_260397_260781_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|121aa|up_3|NC_018664.1_260859_261222_+	pfam03646, FlaG, FlaG protein	NA|611aa|up_2|NC_018664.1_261237_263070_+	PRK07737, fliD, flagellar hook-associated protein 2	NA|133aa|up_1|NC_018664.1_263117_263516_+	pfam02561, FliS, Flagellar protein FliS	NA|149aa|up_0|NC_018664.1_263517_263964_+	pfam05130, FlgN, FlgN protein	NA|177aa|down_0|NC_018664.1_265376_265907_+	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|916aa|down_1|NC_018664.1_266153_268901_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|361aa|down_2|NC_018664.1_268961_270045_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|719aa|down_3|NC_018664.1_270217_272374_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|247aa|down_4|NC_018664.1_272429_273170_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|387aa|down_5|NC_018664.1_273201_274362_+	cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|196aa|down_6|NC_018664.1_274713_275301_+	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|153aa|down_7|NC_018664.1_275483_275942_+	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE	NA|148aa|down_8|NC_018664.1_276647_277091_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|319aa|down_9|NC_018664.1_277155_278112_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)
GCF_000299355.1_ASM29935v1	NC_018664	Gottschalkia acidurici 9a, complete sequence	2	704762-706990	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2	csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	Unclear	GCATTAATAGAACTAAAGTAGAATGTAAAT,GNATTAATAGAACTAAAGTAGAATGTAAAT,ATTAATAGAACTAAAGTAGAATGTAAAT	30,30,28	0	0	NA	NA	NA:NA:NA	33,33,33	33	Unclear	csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	NA|61aa|up_9|NC_018664.1_694399_694582_-,NA|95aa|up_8|NC_018664.1_694981_695266_+,NA|98aa|down_4|NC_018664.1_712779_713073_+,NA|604aa|down_5|NC_018664.1_713178_714990_+,NA|144aa|down_7|NC_018664.1_716814_717246_+,NA|60aa|down_9|NC_018664.1_718151_718331_-	NA|61aa|up_9|NC_018664.1_694399_694582_-	NA	NA|95aa|up_8|NC_018664.1_694981_695266_+	NA	WYL|319aa|up_7|NC_018664.1_695458_696415_+	pfam13280, WYL, WYL domain	cas6|249aa|up_6|NC_018664.1_696452_697199_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|561aa|up_5|NC_018664.1_697210_698893_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|295aa|up_4|NC_018664.1_698882_699767_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|254aa|up_3|NC_018664.1_699753_700515_+	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas4|164aa|up_2|NC_018664.1_702797_703289_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|331aa|up_1|NC_018664.1_703298_704291_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|93aa|up_0|NC_018664.1_704297_704576_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|273aa|down_0|NC_018664.1_707140_707959_+	cd02143, nitroreductase_FeS-like, nitroreductases with an N-terminal iron-sulfur cluster-binding domain	NA|427aa|down_1|NC_018664.1_708391_709672_+	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|279aa|down_2|NC_018664.1_709737_710574_+	TIGR00762, DegV, EDD domain protein, DegV family	NA|682aa|down_3|NC_018664.1_710623_712669_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|98aa|down_4|NC_018664.1_712779_713073_+	NA	NA|604aa|down_5|NC_018664.1_713178_714990_+	NA	NA|573aa|down_6|NC_018664.1_715007_716726_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|144aa|down_7|NC_018664.1_716814_717246_+	NA	NA|238aa|down_8|NC_018664.1_717267_717981_-	pfam01996, F420_ligase, F420-0:Gamma-glutamyl ligase	NA|60aa|down_9|NC_018664.1_718151_718331_-	NA
GCF_000299355.1_ASM29935v1	NC_018664	Gottschalkia acidurici 9a, complete sequence	3	1574076-1574229	3	CRISPRCasFinder	no		csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	Orphan	CATTCGAAATCAAAATCATGCTCTTTTCTTCTGTCGT	37	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	NA|85aa|up_9|NC_018664.1_1564826_1565081_+,NA|61aa|up_8|NC_018664.1_1566047_1566230_-,NA|89aa|up_7|NC_018664.1_1566682_1566949_+,NA|164aa|up_4|NC_018664.1_1569369_1569861_-,NA|103aa|up_3|NC_018664.1_1570586_1570895_+,NA|105aa|up_0|NC_018664.1_1573183_1573498_-,NA|48aa|down_1|NC_018664.1_1575309_1575453_+,NA|65aa|down_2|NC_018664.1_1576008_1576203_+,NA|160aa|down_3|NC_018664.1_1576254_1576734_+,NA|60aa|down_5|NC_018664.1_1577696_1577876_+,NA|75aa|down_6|NC_018664.1_1579392_1579617_-,NA|63aa|down_7|NC_018664.1_1579925_1580114_+	NA|85aa|up_9|NC_018664.1_1564826_1565081_+	NA	NA|61aa|up_8|NC_018664.1_1566047_1566230_-	NA	NA|89aa|up_7|NC_018664.1_1566682_1566949_+	NA	NA|159aa|up_6|NC_018664.1_1568035_1568512_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|up_5|NC_018664.1_1568655_1569108_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|164aa|up_4|NC_018664.1_1569369_1569861_-	NA	NA|103aa|up_3|NC_018664.1_1570586_1570895_+	NA	NA|52aa|up_2|NC_018664.1_1571914_1572070_+	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T	NA|286aa|up_1|NC_018664.1_1572329_1573187_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|105aa|up_0|NC_018664.1_1573183_1573498_-	NA	NA|190aa|down_0|NC_018664.1_1574550_1575120_+	pfam16784, HNHc_6, Putative HNHc nuclease	NA|48aa|down_1|NC_018664.1_1575309_1575453_+	NA	NA|65aa|down_2|NC_018664.1_1576008_1576203_+	NA	NA|160aa|down_3|NC_018664.1_1576254_1576734_+	NA	NA|147aa|down_4|NC_018664.1_1577111_1577552_+	COG3981, COG3981, Predicted acetyltransferase [General function prediction only]	NA|60aa|down_5|NC_018664.1_1577696_1577876_+	NA	NA|75aa|down_6|NC_018664.1_1579392_1579617_-	NA	NA|63aa|down_7|NC_018664.1_1579925_1580114_+	NA	NA|373aa|down_8|NC_018664.1_1582005_1583124_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|188aa|down_9|NC_018664.1_1583136_1583700_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)
GCF_000299355.1_ASM29935v1	NC_018664	Gottschalkia acidurici 9a, complete sequence	4	2342574-2342866	4	CRISPRCasFinder	no		csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	Orphan	ATTTACATTCTACTCTAGTTCTATTAATAC	30	0	0	NA	NA	NA	4	4	Orphan	csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	NA|165aa|up_9|NC_018664.1_2336091_2336586_-,NA|84aa|up_7|NC_018664.1_2337391_2337643_-,NA|68aa|up_5|NC_018664.1_2338988_2339192_-,NA|89aa|up_4|NC_018664.1_2339438_2339705_-,NA|57aa|up_3|NC_018664.1_2339984_2340155_-,NA|140aa|up_2|NC_018664.1_2340325_2340745_-,NA|61aa|up_1|NC_018664.1_2340847_2341030_-,NA	NA|165aa|up_9|NC_018664.1_2336091_2336586_-	NA	NA|133aa|up_8|NC_018664.1_2336685_2337084_-	pfam03838, RecU, Recombination protein U	NA|84aa|up_7|NC_018664.1_2337391_2337643_-	NA	NA|166aa|up_6|NC_018664.1_2337662_2338160_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|68aa|up_5|NC_018664.1_2338988_2339192_-	NA	NA|89aa|up_4|NC_018664.1_2339438_2339705_-	NA	NA|57aa|up_3|NC_018664.1_2339984_2340155_-	NA	NA|140aa|up_2|NC_018664.1_2340325_2340745_-	NA	NA|61aa|up_1|NC_018664.1_2340847_2341030_-	NA	NA|156aa|up_0|NC_018664.1_2341184_2341652_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|517aa|down_0|NC_018664.1_2343934_2345485_+	pfam07508, Recombinase, Recombinase	NA|121aa|down_1|NC_018664.1_2345529_2345892_+	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|81aa|down_2|NC_018664.1_2346105_2346348_+	pfam04023, FeoA, FeoA domain	NA|257aa|down_3|NC_018664.1_2346369_2347140_+	pfam02421, FeoB_N, Ferrous iron transport protein B	NA|463aa|down_4|NC_018664.1_2347132_2348521_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|141aa|down_5|NC_018664.1_2348582_2349005_-	PRK03902, PRK03902, transcriptional regulator MntR	NA|75aa|down_6|NC_018664.1_2349230_2349455_+	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|677aa|down_7|NC_018664.1_2349507_2351538_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|169aa|down_8|NC_018664.1_2351631_2352138_-	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|229aa|down_9|NC_018664.1_2353083_2353770_-	cd03392, PAP2_like_2, PAP2_like_2 proteins
GCF_000299355.1_ASM29935v1	NC_018664	Gottschalkia acidurici 9a, complete sequence	5	2342944-2343634	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no		csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	Orphan	ATTTACATTCTACTCTAGTTCTATTAATAC,ATTTACATTCTACTCTAGTTCTATTAATAC,GTATTAATAGAACTAGAGTAGAATGTAAAT	30,30,30	0	0	NA	NA	NA:NA:NA	10,10,9	10	Orphan	csa3,cas14j,WYL,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,c2c9_V-U4,DEDDh,cas3,DinG,c2c4_V-U1	NA|165aa|up_9|NC_018664.1_2336091_2336586_-,NA|84aa|up_7|NC_018664.1_2337391_2337643_-,NA|68aa|up_5|NC_018664.1_2338988_2339192_-,NA|89aa|up_4|NC_018664.1_2339438_2339705_-,NA|57aa|up_3|NC_018664.1_2339984_2340155_-,NA|140aa|up_2|NC_018664.1_2340325_2340745_-,NA|61aa|up_1|NC_018664.1_2340847_2341030_-,NA	NA|165aa|up_9|NC_018664.1_2336091_2336586_-	NA	NA|133aa|up_8|NC_018664.1_2336685_2337084_-	pfam03838, RecU, Recombination protein U	NA|84aa|up_7|NC_018664.1_2337391_2337643_-	NA	NA|166aa|up_6|NC_018664.1_2337662_2338160_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|68aa|up_5|NC_018664.1_2338988_2339192_-	NA	NA|89aa|up_4|NC_018664.1_2339438_2339705_-	NA	NA|57aa|up_3|NC_018664.1_2339984_2340155_-	NA	NA|140aa|up_2|NC_018664.1_2340325_2340745_-	NA	NA|61aa|up_1|NC_018664.1_2340847_2341030_-	NA	NA|156aa|up_0|NC_018664.1_2341184_2341652_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|517aa|down_0|NC_018664.1_2343934_2345485_+	pfam07508, Recombinase, Recombinase	NA|121aa|down_1|NC_018664.1_2345529_2345892_+	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|81aa|down_2|NC_018664.1_2346105_2346348_+	pfam04023, FeoA, FeoA domain	NA|257aa|down_3|NC_018664.1_2346369_2347140_+	pfam02421, FeoB_N, Ferrous iron transport protein B	NA|463aa|down_4|NC_018664.1_2347132_2348521_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|141aa|down_5|NC_018664.1_2348582_2349005_-	PRK03902, PRK03902, transcriptional regulator MntR	NA|75aa|down_6|NC_018664.1_2349230_2349455_+	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|677aa|down_7|NC_018664.1_2349507_2351538_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|169aa|down_8|NC_018664.1_2351631_2352138_-	cd01055, Nonheme_Ferritin, nonheme-containing ferritins	NA|229aa|down_9|NC_018664.1_2353083_2353770_-	cd03392, PAP2_like_2, PAP2_like_2 proteins
