The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_018518	Bordetella pertussis 18323, complete genome	4043846	27238	78099	4043846	tRNA,transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010929577.1|27238_28189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998031.1|28206_28371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815086.1|28371_29145_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003815084.1|29234_30044_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446142.1|30054_31122_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_014905383.1|31279_34888_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_014905384.1|34978_35659_-	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010927126.1|35870_36779_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003815073.1|36775_37447_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_003815070.1|37765_38782_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_014905385.1|38901_40092_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014905386.1|40093_41194_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815064.1|41248_41989_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_010931671.1|42109_43132_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815061.1|43131_43599_+	membrane protein	NA	NA	NA	NA	NA
WP_010931670.1|43617_45144_-	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_010931669.1|45130_46588_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_003815055.1|46685_46874_+	DUF3460 family protein	NA	NA	NA	NA	NA
WP_003815053.1|46900_47788_+	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815051.1|47832_48675_+	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815049.1|48772_49120_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815047.1|49202_49946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820519.1|50186_51026_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_010931667.1|51034_51679_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_023853184.1|51720_52473_+	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931666.1|52653_53904_+	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010931665.1|53900_56969_+	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003815032.1|56965_60073_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_041166113.1|60069_61572_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_005012067.1|61670_62621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|62617_63568_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815027.1|63668_64631_-	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_003815026.1|64623_65490_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_010931662.1|65689_66916_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_014905388.1|67085_68036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929585.1|69450_70362_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|70363_72502_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|72498_73038_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|73041_73770_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|73756_74650_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003814410.1|74720_75116_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|75125_75656_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_041166115.1|75784_76036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|76099_77050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|77148_78099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NC_018518	Bordetella pertussis 18323, complete genome	4043846	83099	143991	4043846	terminase,transposase	Pseudomonas_phage(25.0%)	51	NA	NA
WP_005012067.1|83099_84050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|84207_85473_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|85506_86604_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_014905391.1|87258_88209_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|88209_88779_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905392.1|88846_89662_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905393.1|89828_91448_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|91526_92468_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|92467_93352_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|93355_95008_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|95047_96445_+	amidase family protein	NA	NA	NA	NA	NA
WP_010929975.1|96486_97866_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|97905_98124_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|98464_99337_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_010927036.1|99450_100098_+	OmpA family protein	NA	NA	NA	NA	NA
WP_003814437.1|100121_100499_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|100483_101185_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|101328_102021_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_023852735.1|102020_103061_-	phosphotransferase	NA	NA	NA	NA	NA
WP_033446130.1|103239_105606_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|105602_107162_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|107186_107984_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|108015_109161_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|109265_110708_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_014905394.1|110710_111940_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|114077_115028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|115139_115862_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|115960_116704_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_003815418.1|118563_119295_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|119341_120802_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003815416.1|120826_121306_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|121324_122335_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_014905395.1|122549_123290_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905396.1|123496_124471_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_005012067.1|124467_125418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|127376_128255_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_041166240.1|129181_132160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|132509_133460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|133888_134491_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_014905397.1|134613_134856_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	54.5	1.5e-16
WP_010931445.1|134861_135917_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|135945_137364_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|137366_138644_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|138630_139116_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_014905398.1|139666_140107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063596.1|140306_141125_-	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	43.8	1.2e-22
WP_014905401.1|141244_141721_-	phage protein	NA	NA	NA	NA	NA
WP_014905402.1|141717_142473_-	hypothetical protein	NA	U6C6D0	Ralstonia_phage	38.0	1.0e-26
WP_033470402.1|142472_143285_-	helix-turn-helix domain-containing protein	NA	A0A1B0YZZ0	Pseudomonas_phage	45.4	9.4e-15
WP_033452948.1|143327_143543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905404.1|143544_143991_-	DUF1364 family protein	NA	Q8W6N7	Burkholderia_virus	51.1	5.9e-19
>prophage 3
NC_018518	Bordetella pertussis 18323, complete genome	4043846	148249	198089	4043846	transposase	Escherichia_phage(22.22%)	48	NA	NA
WP_005012067.1|148249_149200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|149298_150372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905406.1|150539_151334_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|151373_151898_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|151890_153633_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|153842_154601_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|154603_155311_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_014905407.1|155327_156209_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014905408.1|156219_157206_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014905409.1|157307_158225_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905410.1|158346_159579_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905411.1|159648_161067_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|161088_161739_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|161872_162208_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|162296_163247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905412.1|163243_165118_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	8.8e-24
WP_005012067.1|166567_167518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807102.1|167514_168219_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|168215_169322_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|169583_170177_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|170173_171361_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_014905413.1|171423_172683_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|172706_173795_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|173802_174903_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|174906_175482_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|175485_176538_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_014905414.1|176668_177676_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|177677_178964_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|178980_179136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|179160_179964_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|179960_180827_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|180901_182032_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|182031_182871_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|183803_184406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|184435_185089_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|185316_186267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905415.1|186270_187527_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|187607_188474_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|188549_188825_+	YbeD family protein	NA	NA	NA	NA	NA
WP_003818418.1|188832_189495_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|189556_190558_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|190572_191121_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|191178_192075_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|192071_193133_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_005012808.1|193168_194119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905416.1|194220_194649_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003807447.1|194721_196917_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|197138_198089_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NC_018518	Bordetella pertussis 18323, complete genome	4043846	260740	319266	4043846	transposase	Acinetobacter_phage(30.0%)	53	NA	NA
WP_005012808.1|260740_261691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905431.1|261840_262824_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905432.1|265000_265735_+	crotonase	NA	NA	NA	NA	NA
WP_014486055.1|265810_266791_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|267251_267851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807867.1|267919_268912_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486054.1|268961_270551_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_014486053.1|270591_271488_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905433.1|271484_273191_+	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_019247259.1|273358_274537_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486050.1|275350_276052_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486049.1|275978_276962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929840.1|277419_278343_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814626.1|278351_278750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905434.1|278991_280971_+	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_010926403.1|283443_283644_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929845.1|283756_284098_-	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_041166122.1|284108_285293_-	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929847.1|285329_285857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929848.1|285914_286562_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_014905436.1|286558_287545_-	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010926410.1|287548_287731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|287727_288105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905437.1|288338_288818_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	1.7e-43
WP_010929577.1|288955_289906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905438.1|289951_293338_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929801.1|293479_293884_-	RidA family protein	NA	NA	NA	NA	NA
WP_010929802.1|294027_295014_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247316.1|295000_295282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929803.1|296027_297260_-	dehydratase	NA	NA	NA	NA	NA
WP_010929804.1|297259_297754_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_014905439.1|297885_298848_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929806.1|298825_300079_-	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|300200_301151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|301163_302099_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|302158_302998_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|302994_304164_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|304160_305450_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|305492_305867_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|305981_306710_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|306717_307422_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_014905440.1|307685_309206_+	anthranilate synthase component I	NA	S4VNU7	Pandoravirus	32.0	1.8e-43
WP_003815390.1|309261_309825_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|309843_310875_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|310871_311660_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|311680_311839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905441.1|311835_312825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905442.1|312917_313649_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003815398.1|313685_314315_-	2-hydroxychromene-2-carboxylate isomerase	NA	NA	NA	NA	NA
WP_014905443.1|314311_314578_-	DUF2917 domain-containing protein	NA	NA	NA	NA	NA
WP_014905444.1|314706_315621_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905445.1|315662_316649_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|318315_319266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NC_018518	Bordetella pertussis 18323, complete genome	4043846	406980	480675	4043846	tRNA,transposase,protease	Acanthamoeba_polyphaga_mimivirus(16.67%)	58	NA	NA
WP_041166123.1|406980_409776_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929689.1|413373_414093_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|414131_414680_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|414834_415734_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|415758_416709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|416807_417434_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_014905464.1|417456_418383_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|418391_419978_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|419974_420979_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|421178_422039_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|422070_423072_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|423142_423952_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|424029_425889_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|425998_427201_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|427314_428196_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905465.1|428229_429567_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_004566083.1|429696_430257_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_014905466.1|430316_431294_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905467.1|432268_434128_+	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA	NA
WP_010929808.1|434175_435345_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|435445_437053_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_014905468.1|437099_439121_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|439149_439395_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|439408_440599_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|440794_441760_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905469.1|441782_442934_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_014905470.1|443145_444108_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|444231_446256_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_014905471.1|446452_448696_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|448974_449433_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_014905472.1|449449_450409_+|tRNA	tRNA glutamyl-Q(34) synthetase GluQRS	tRNA	NA	NA	NA	NA
WP_014905473.1|450395_453017_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|453080_455708_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_014905474.1|455859_456924_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_041166124.1|456923_457694_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_014905476.1|457702_458536_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014905477.1|458548_459328_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|459401_460835_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818228.1|460862_461621_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853380.1|461676_463518_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|463620_464097_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|464113_465034_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|465140_465641_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|466014_466707_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_023853374.1|466720_466861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162471241.1|466821_466998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905478.1|467015_468014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|467976_468411_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|469927_470812_+	DMT family transporter	NA	NA	NA	NA	NA
WP_041166125.1|470808_471036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|471053_472004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_080019410.1|471983_473063_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|473059_473920_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|474032_475823_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_023852857.1|475863_476514_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.6e-11
WP_010929971.1|476529_476838_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|477003_478290_-	membrane protein	NA	NA	NA	NA	NA
WP_014905388.1|479724_480675_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NC_018518	Bordetella pertussis 18323, complete genome	4043846	530436	601265	4043846	transposase	Bacillus_phage(44.44%)	60	NA	NA
WP_010930525.1|530436_531453_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003807735.1|531644_532748_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931562.1|532834_533599_+	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_010931563.1|533720_534911_+	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_005012067.1|534907_535858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|535956_536862_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|536858_537692_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|538537_539548_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|539544_539934_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_033446324.1|540815_542081_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|542171_543872_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|544298_544946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049805778.1|544944_546384_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|546494_546779_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|546806_547685_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|548951_549902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_049805779.1|549994_550561_-	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA	NA
WP_014905490.1|550650_551532_-	ferritin	NA	NA	NA	NA	NA
WP_041166246.1|551706_553260_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2N9QVT9	Dishui_lake_phycodnavirus	28.7	1.3e-33
WP_023853232.1|553265_553901_-	SCP-2 sterol transfer family protein	NA	NA	NA	NA	NA
WP_010929656.1|554129_555152_-	Tim44 domain-containing protein	NA	NA	NA	NA	NA
WP_003815111.1|555317_556094_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_003815113.1|556257_556956_+	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	37.1	8.6e-33
WP_010929655.1|556967_558278_+	phosphate regulon sensor histidine kinase PhoR	NA	A0A1V0SGX0	Hokovirus	25.5	6.2e-16
WP_010929654.1|558333_559011_+	heavy metal response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-29
WP_014905492.1|559007_560405_+	heavy metal sensor histidine kinase	NA	NA	NA	NA	NA
WP_010929652.1|560510_560972_+	DUF411 domain-containing protein	NA	NA	NA	NA	NA
WP_023853237.1|561078_562278_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.6	3.1e-91
WP_010929650.1|562328_563204_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815126.1|563305_563737_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929649.1|563761_564490_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA	NA
WP_010929648.1|564486_565467_+	biotin-dependent carboxyltransferase	NA	NA	NA	NA	NA
WP_014905493.1|565463_566222_+	LamB/YcsF family protein	NA	NA	NA	NA	NA
WP_010929647.1|567189_568161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247545.1|568229_568988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247546.1|569006_569450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817676.1|569470_570283_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929646.1|570288_571221_+	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_010929645.1|571204_572428_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929644.1|572515_573298_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_041166130.1|573350_577313_-	FAD/FMN-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003815155.1|578050_579559_+	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA	NA
WP_077082470.1|579607_579961_-	porin	NA	NA	NA	NA	NA
WP_005012067.1|579978_580929_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|581972_582251_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010929716.1|583393_583942_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_014905495.1|584004_585684_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_014905496.1|585680_587432_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|587428_587554_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|587567_588722_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_023852659.1|588737_590315_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|590440_590986_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|591545_592496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|592710_593406_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905497.1|593422_594835_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|594947_596378_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|596419_598333_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|598651_599218_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_014905498.1|599309_600311_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_041166247.1|600323_601265_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NC_018518	Bordetella pertussis 18323, complete genome	4043846	631417	691206	4043846	transposase	Staphylococcus_phage(16.67%)	57	NA	NA
WP_010929956.1|631417_632368_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905505.1|632772_633417_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|633441_634026_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|634126_634744_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_014905507.1|634746_636462_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|636458_636767_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|636783_637401_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|637445_637748_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|637848_638703_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|638890_639115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|639284_639557_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|639974_640382_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|640751_641546_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|641589_642540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905508.1|643696_644743_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005013747.1|644841_645792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905509.1|646022_647744_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|647792_648065_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|648061_648433_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|648528_648663_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|649068_650478_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|650480_651590_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|651684_654138_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_015040793.1|654256_655048_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|655167_656595_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|656633_657605_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|658023_659187_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_014905511.1|659274_660120_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_041166131.1|660213_661953_+	peptidase M14	NA	NA	NA	NA	NA
WP_003816007.1|661973_662411_+	acetyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|662509_663460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931139.1|663456_664608_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_014905513.1|664755_665766_-	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	25.1	6.2e-16
WP_010931138.1|665936_666902_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_033446289.1|667076_667907_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813109.1|667993_668260_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_014905514.1|668264_669176_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_010931136.1|669225_671088_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003813103.1|671244_672042_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010926331.1|672261_672642_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813095.1|672689_673013_+	primosomal replication protein N	NA	NA	NA	NA	NA
WP_003813094.1|673105_673378_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_010931135.1|673393_673849_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813091.1|673965_674802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813089.1|674798_676172_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_014905515.1|676192_677161_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813085.1|677240_678218_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_003813082.1|678322_680002_-	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.9	1.5e-70
WP_003813079.1|680081_680546_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813077.1|680548_681001_-	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931132.1|681217_682405_+	alanine transaminase	NA	NA	NA	NA	NA
WP_003813074.1|682401_683706_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931131.1|683702_685109_+	threonine synthase	NA	NA	NA	NA	NA
WP_003813070.1|685322_685544_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_005012808.1|685752_686703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162835094.1|686774_687872_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|690255_691206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NC_018518	Bordetella pertussis 18323, complete genome	4043846	700852	768120	4043846	holin,transposase,protease	uncultured_Mediterranean_phage(25.0%)	47	NA	NA
WP_005012067.1|700852_701803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905517.1|701970_703362_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|703434_704013_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_041166132.1|704129_705527_+	chloride channel protein	NA	NA	NA	NA	NA
WP_014905519.1|705642_706848_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|706947_707466_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|707560_707806_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|708033_708348_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_162471245.1|708446_713627_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|713623_715792_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_014905521.1|715847_718163_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	3.1e-164
WP_003820402.1|718167_719487_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|719505_721179_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|721183_721852_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|722008_725830_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_158322896.1|725984_726143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|726160_727111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|727132_728278_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905523.1|728426_729356_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|729352_730441_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|730437_731241_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|731237_731969_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|732026_733316_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|733412_734015_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|738566_738905_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|739612_739879_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_014905524.1|742531_743869_-	MFS transporter	NA	NA	NA	NA	NA
WP_014905525.1|745129_747130_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_014905526.1|747122_747764_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|747760_748168_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|748164_748965_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_014905527.1|749039_749744_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|749775_750570_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|750566_751517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|751657_752875_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|752868_753480_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|754113_755091_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|755234_755981_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|756002_756449_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_014905528.1|757236_759468_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|759490_760291_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|760572_761805_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|761915_762905_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|762935_764324_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_014905529.1|764371_765865_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_003813988.1|765923_766907_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905421.1|767103_768120_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NC_018518	Bordetella pertussis 18323, complete genome	4043846	791110	852694	4043846	holin,transposase	Vibrio_phage(12.5%)	51	NA	NA
WP_005013747.1|791110_792061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|792143_794102_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|794129_794831_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905538.1|794835_795795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813954.1|795791_796607_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_003813952.1|796623_797427_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|797410_797845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|797841_798276_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_041166249.1|798277_798877_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|798849_799800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_135186269.1|799817_800144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446280.1|800202_800910_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_019247284.1|800884_802039_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_014905539.1|802163_802436_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_010930871.1|802440_803205_-	YdcF family protein	NA	NA	NA	NA	NA
WP_010926806.1|803217_804183_-	heptosyltransferase II	NA	NA	NA	NA	NA
WP_003813209.1|804294_806070_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.5	4.0e-50
WP_010930869.1|806042_807542_-	MFS transporter	NA	NA	NA	NA	NA
WP_003813206.1|807625_808171_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905540.1|808167_809070_+	PDT and ACT domain-containing protein	NA	NA	NA	NA	NA
WP_010930867.1|809103_810567_-	ribonuclease G	NA	NA	NA	NA	NA
WP_005012808.1|810610_811561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905541.1|818039_820787_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|820807_821431_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|821442_821913_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|821924_822311_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003820260.1|822372_822960_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|822956_823868_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_023853662.1|823883_825194_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|825291_826023_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853666.1|826177_827698_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_023853659.1|827770_829114_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|829148_830474_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|830655_831588_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|831598_833092_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|833088_834012_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|834014_835277_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|835296_836310_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|836382_836673_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_014905542.1|836702_837977_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.2e-24
WP_162268683.1|837958_838102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905543.1|838119_839070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905544.1|839066_840704_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|840708_841548_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_161780341.1|841544_842552_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|842668_844243_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|844662_846207_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|846311_847379_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_003813155.1|847397_848984_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|848980_850171_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_005012067.1|851743_852694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NC_018518	Bordetella pertussis 18323, complete genome	4043846	1345965	1414957	4043846	transposase	Klosneuvirus(10.0%)	56	NA	NA
WP_005013747.1|1345965_1346916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905635.1|1347014_1349615_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1349721_1350726_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003818660.1|1350834_1352175_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1352215_1353244_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1353439_1353985_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1353981_1354542_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|1354640_1355591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|1358331_1359621_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|1359739_1360177_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|1360220_1361429_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|1361575_1362040_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_005015810.1|1362063_1363014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1363112_1364129_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_014905636.1|1364307_1365342_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1365338_1365965_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_014905637.1|1365961_1367020_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1367069_1367840_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_014905638.1|1367890_1368727_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1368923_1369664_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905639.1|1369738_1370482_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1371158_1371917_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_014905640.1|1373054_1374344_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1375954_1377202_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1377211_1378921_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1378917_1379856_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1379852_1381136_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1381139_1381622_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_014905641.1|1381622_1382609_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1382781_1383501_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1383617_1384568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811518.1|1385238_1386228_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014905642.1|1387169_1388375_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811524.1|1388570_1389056_+	glyoxalase	NA	NA	NA	NA	NA
WP_041166153.1|1389039_1390257_+	monooxygenase	NA	NA	NA	NA	NA
WP_014905644.1|1390433_1391360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905645.1|1393597_1394548_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|1394577_1394760_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_014905646.1|1395532_1396714_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|1396929_1397607_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|1397603_1398329_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|1398454_1399036_-	OmpA family protein	NA	NA	NA	NA	NA
WP_014905647.1|1399406_1402124_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.3e-104
WP_023852687.1|1402126_1403257_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|1403249_1404335_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|1404421_1405321_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|1405317_1406646_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_014905648.1|1406660_1407332_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|1407519_1409235_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|1409236_1409596_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|1409787_1410102_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|1410144_1411365_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|1411361_1412303_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_014905649.1|1412299_1413289_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|1413323_1413908_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1414006_1414957_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NC_018518	Bordetella pertussis 18323, complete genome	4043846	1434359	1567380	4043846	transposase	Erysipelothrix_phage(25.0%)	108	NA	NA
WP_010930048.1|1434359_1435310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1435414_1436464_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010930525.1|1436560_1437577_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1439085_1439658_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1439717_1440449_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1440500_1441418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486063.1|1445403_1446786_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1446855_1447107_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1447254_1447869_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1448055_1450116_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1450245_1451097_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1451093_1451720_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1451716_1453471_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_014905653.1|1453763_1456469_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_014905654.1|1456481_1458128_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_014905655.1|1458140_1459916_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1460137_1461313_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_005012808.1|1461355_1462306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1462404_1463145_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1463339_1465376_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1465393_1466404_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1466521_1467715_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_014905656.1|1467744_1468518_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_014905657.1|1468514_1469705_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1469730_1470669_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_014905658.1|1470665_1473014_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1473168_1473810_-	glutathione transferase	NA	NA	NA	NA	NA
WP_077085735.1|1473913_1475047_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1475139_1475292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905659.1|1475323_1475872_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1475890_1476376_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1476553_1477492_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1477494_1477812_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1477857_1478802_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930140.1|1478822_1480298_-	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_010930141.1|1480482_1481133_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1481186_1481522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905660.1|1481518_1482379_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	35.4	4.5e-15
WP_003819817.1|1482395_1482677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1482750_1483014_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1483257_1484208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1484204_1486070_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905661.1|1486327_1487857_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1487968_1488619_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1489671_1490967_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1490988_1491873_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905662.1|1491971_1492847_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1492836_1493193_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1493323_1494298_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1494427_1494607_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1494704_1495229_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003816971.1|1496188_1496560_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1496556_1497108_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816977.1|1498831_1499512_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1499759_1500224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1500393_1501323_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1501335_1501983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1502056_1503874_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1503957_1504908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1505560_1506511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1506529_1506877_-	GFA family protein	NA	NA	NA	NA	NA
WP_014905664.1|1506905_1508345_-	DHA2 family efflux MFS transporter permease subunit	NA	A0A0M3UL24	Mycobacterium_phage	37.6	8.8e-56
WP_014905665.1|1508363_1508759_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1508933_1509542_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1509554_1510373_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1510324_1511299_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905666.1|1511327_1512395_-	XdhC family protein	NA	NA	NA	NA	NA
WP_014905667.1|1512391_1514608_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1514621_1515080_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1515237_1515582_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1515738_1516644_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1516730_1517744_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_014905421.1|1519738_1520755_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930747.1|1520897_1522250_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.4	8.5e-45
WP_003812172.1|1522424_1522721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905668.1|1522819_1523770_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247855.1|1524255_1524432_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812044.1|1525116_1526088_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905669.1|1526091_1526946_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812040.1|1526964_1527783_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_080019425.1|1527802_1529263_+	amidase	NA	NA	NA	NA	NA
WP_019247851.1|1529220_1530054_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014905672.1|1530339_1531845_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_003812032.1|1531886_1532669_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_003812030.1|1532738_1533185_-	membrane protein	NA	NA	NA	NA	NA
WP_010930743.1|1533181_1534408_-	NnrS family protein	NA	NA	NA	NA	NA
WP_003812026.1|1534400_1534805_-	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_003812024.1|1534964_1535267_+	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_005013747.1|1535263_1536214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999972.1|1536231_1536471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1536952_1537384_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_003811318.1|1537565_1537970_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003811319.1|1538174_1539212_+	M4 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930301.1|1539208_1539532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926674.1|1539534_1540422_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1540454_1540880_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1540951_1541305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1541544_1542051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905673.1|1542089_1543421_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1543480_1544296_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1544292_1545147_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1548209_1550753_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_014905674.1|1552298_1553249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905675.1|1553228_1554923_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1554919_1557040_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1557044_1559240_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_005013747.1|1560345_1561296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1566429_1567380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NC_018518	Bordetella pertussis 18323, complete genome	4043846	1579546	1641321	4043846	transposase	Streptococcus_phage(16.67%)	53	NA	NA
WP_014905678.1|1579546_1580563_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|1580754_1583091_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|1583173_1583608_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1583706_1584657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|1584653_1586486_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|1586884_1587544_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|1587637_1587784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|1587892_1588060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|1588071_1588752_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|1589033_1589750_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|1589764_1591066_-	phospholipase	NA	NA	NA	NA	NA
WP_010930057.1|1596330_1597683_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|1597711_1598233_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|1598229_1599684_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|1599718_1599967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|1600072_1600948_+	amidohydrolase	NA	NA	NA	NA	NA
WP_014905679.1|1600973_1602029_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|1602041_1602833_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905680.1|1602865_1604236_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|1605412_1606363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819994.1|1606881_1607103_+	biotin/lipoyl-binding carrier protein	NA	NA	NA	NA	NA
WP_014905681.1|1607099_1607825_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_014905682.1|1607832_1609329_+	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014905683.1|1609367_1610375_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905684.1|1610477_1611035_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003809811.1|1611052_1612339_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_041166162.1|1612351_1613479_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905685.1|1613579_1614812_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014905686.1|1614910_1615321_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_041166261.1|1615353_1616157_+	2-oxo-hepta-3-ene-1,7-dioic acid hydratase	NA	NA	NA	NA	NA
WP_005015810.1|1616213_1617164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|1617315_1617918_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|1617936_1618569_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|1618613_1618865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809623.1|1618806_1620693_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_014905688.1|1620711_1621554_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.2	2.7e-25
WP_003819875.1|1621550_1622909_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|1623129_1623924_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|1624154_1625648_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|1625883_1627965_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|1628159_1629200_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_014905689.1|1629334_1630351_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|1630372_1631230_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|1631274_1632051_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_158322903.1|1632263_1632401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1632418_1633369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905690.1|1633900_1634869_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905691.1|1635190_1636198_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_041166163.1|1636257_1637052_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_014905693.1|1637204_1638092_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_014905694.1|1638121_1638577_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_014905695.1|1638655_1639888_+	CoA transferase	NA	NA	NA	NA	NA
WP_014905696.1|1640370_1641321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NC_018518	Bordetella pertussis 18323, complete genome	4043846	1680386	1726340	4043846	tRNA,transposase	Paramecium_bursaria_Chlorella_virus(50.0%)	31	NA	NA
WP_005012067.1|1680386_1681337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1681447_1682143_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1684964_1685564_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1685574_1687740_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_014905703.1|1687763_1689542_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1689541_1689631_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1690325_1690598_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1690597_1692664_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_005012067.1|1692660_1693611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1693709_1694342_-	fimbrial protein	NA	NA	NA	NA	NA
WP_014905704.1|1694511_1696794_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_014905705.1|1696948_1699645_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1699767_1700256_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905706.1|1702440_1703391_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813631.1|1703715_1706586_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1706631_1707846_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1708075_1709503_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1709600_1710692_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1710704_1711463_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1711550_1712453_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905707.1|1712449_1713400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1713529_1714513_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1714567_1715290_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926922.1|1716380_1716914_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003813612.1|1716906_1717869_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003813609.1|1717962_1720440_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_033447956.1|1720583_1720865_+	DUF3649 domain-containing protein	NA	NA	NA	NA	NA
WP_162835035.1|1722503_1722827_+	DUF3325 family protein	NA	NA	NA	NA	NA
WP_005013747.1|1722975_1723926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930211.1|1723935_1725291_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930742.1|1725389_1726340_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NC_018518	Bordetella pertussis 18323, complete genome	4043846	1741326	1794133	4043846	tRNA,transposase	Yersinia_phage(10.0%)	46	NA	NA
WP_005015810.1|1741326_1742277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|1742273_1743224_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1743310_1744261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004568536.1|1744703_1745111_+	M15 family metallopeptidase	NA	A9DET4	Yersinia_phage	51.5	1.8e-30
WP_004568533.1|1745265_1745664_-	RidA family protein	NA	NA	NA	NA	NA
WP_014905712.1|1745813_1747043_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003810741.1|1747018_1747621_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1747860_1748562_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1748555_1749338_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1749522_1750473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905713.1|1750571_1751309_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1751498_1752257_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014905714.1|1752303_1753293_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905715.1|1753470_1754439_-	transporter	NA	NA	NA	NA	NA
WP_014905716.1|1755979_1756948_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1756956_1757898_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1758371_1759382_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1759372_1760887_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1760883_1762230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1762232_1763267_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_041166167.1|1763316_1764942_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.6	4.8e-151
WP_014905499.1|1765596_1766547_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1766543_1767017_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1767178_1768117_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1768118_1769327_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_014905718.1|1769431_1769938_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_014905719.1|1769940_1772802_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	2.7e-72
WP_010930543.1|1772791_1773757_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_049805781.1|1773807_1774494_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	32.6	4.4e-21
WP_005012067.1|1774592_1775543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1775539_1775914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1776175_1777384_+	aminotransferase	NA	NA	NA	NA	NA
WP_003812546.1|1777380_1779681_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1779733_1782346_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_033449632.1|1782705_1784613_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	6.6e-67
WP_010930547.1|1784627_1785524_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1785530_1786670_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_014905721.1|1786669_1787491_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_014905722.1|1787516_1788713_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA	NA
WP_010930549.1|1789063_1789393_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1789775_1791032_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1791106_1791388_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1791429_1791750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1792056_1792260_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|1792343_1792910_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_005012067.1|1793182_1794133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NC_018518	Bordetella pertussis 18323, complete genome	4043846	1797444	1921418	4043846	tRNA,transposase,protease	Klosneuvirus(13.33%)	107	NA	NA
WP_010930556.1|1797444_1798749_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1798937_1801391_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_041166169.1|1801514_1802465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905725.1|1802692_1803916_+	CoA transferase	NA	NA	NA	NA	NA
WP_014905726.1|1803981_1804953_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003812496.1|1804957_1805422_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_014905728.1|1805441_1806239_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1806235_1806667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930563.1|1806663_1807821_+	thiolase	NA	NA	NA	NA	NA
WP_014905729.1|1807842_1808619_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014905730.1|1810831_1811500_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1811492_1812134_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019248063.1|1812168_1812900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1812917_1813130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930179.1|1813694_1814645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905731.1|1815633_1816584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1817251_1817902_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010930567.1|1818030_1819233_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_014905732.1|1819310_1821347_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1821599_1822091_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1822306_1822819_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_003812462.1|1822836_1824048_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1824081_1824492_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1824493_1824817_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1824819_1825332_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_014905733.1|1825461_1827324_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	5.2e-101
WP_003812453.1|1827333_1827675_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1827674_1827869_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1827993_1828887_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_010930573.1|1828909_1829719_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012067.1|1829919_1830870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905734.1|1832142_1833360_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1834416_1835319_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905736.1|1835395_1836268_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1836398_1836767_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1836824_1837871_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1838066_1839323_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1839327_1840665_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1840814_1841771_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905737.1|1841867_1843244_+	DUF1446 domain-containing protein	NA	NA	NA	NA	NA
WP_033446181.1|1843230_1843596_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905738.1|1843643_1845218_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1845270_1846215_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1846232_1847063_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014905739.1|1847055_1848690_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_014905740.1|1848686_1850042_+	amidase	NA	NA	NA	NA	NA
WP_014905741.1|1850948_1852526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|1852529_1853804_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_005013747.1|1853902_1854853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930587.1|1854950_1855325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905742.1|1855321_1857037_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_014905743.1|1857029_1858163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|1858200_1858806_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1858802_1859621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905744.1|1859692_1862317_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1862303_1862558_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_014486105.1|1862714_1863665_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1863661_1864612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816666.1|1865883_1866849_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905746.1|1866986_1867898_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905747.1|1870493_1871981_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1871991_1873188_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1873260_1874580_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_014905748.1|1874576_1875452_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014905749.1|1875482_1876631_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1876648_1876963_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|1876984_1877707_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1877706_1878525_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1878529_1879057_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1879062_1880319_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1880677_1881817_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1881894_1882767_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_005013747.1|1883637_1884588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|1884547_1884961_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_014905750.1|1885245_1885545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1885954_1888237_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|1888702_1888897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905751.1|1888922_1890974_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|1890993_1891206_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|1891483_1892023_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|1892136_1893432_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|1893508_1894666_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|1894849_1895749_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_014905752.1|1895767_1897072_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|1897037_1898144_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|1898231_1898468_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|1898606_1899677_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|1899680_1901036_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|1901062_1902220_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|1902225_1902864_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033450041.1|1902865_1904161_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_041166172.1|1904210_1905497_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|1905512_1906019_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_014905755.1|1906015_1907164_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|1907191_1907617_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|1907939_1910822_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|1910914_1911670_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_014905756.1|1912435_1913785_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_014905674.1|1913883_1914834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|1914907_1915381_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|1915406_1916615_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|1916611_1917385_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|1917384_1918008_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|1918173_1918434_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905758.1|1918737_1919319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1919418_1920369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1920467_1921418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NC_018518	Bordetella pertussis 18323, complete genome	4043846	2286082	2403204	4043846	tRNA,transposase	uncultured_Caudovirales_phage(15.0%)	102	NA	NA
WP_005012067.1|2286082_2287033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|2287131_2288217_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|2288314_2288725_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_014905821.1|2289338_2291252_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_014905822.1|2291387_2294000_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_080019436.1|2294098_2295751_+|transposase	IS481 family transposase	transposase	A0A2H4PQR8	Staphylococcus_phage	47.1	1.5e-59
WP_003810847.1|2295796_2296777_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|2296773_2296986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|2296982_2298164_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_014905823.1|2298327_2299062_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	50.0	1.3e-63
WP_005015810.1|2299063_2300014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2300124_2300565_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2300693_2301923_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2301961_2302783_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2302836_2303988_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852690.1|2304079_2304550_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_041166180.1|2307118_2309668_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2309738_2312312_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2312577_2312778_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2312809_2312971_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2313028_2313367_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_010930179.1|2313515_2314466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905825.1|2314564_2315470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905826.1|2315573_2316536_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010928863.1|2316539_2317211_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.8	2.2e-33
WP_041166181.1|2317209_2317878_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2317859_2319815_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2320057_2320807_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2320819_2321683_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2321686_2323102_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2323235_2323964_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2324102_2324303_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2324478_2324877_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2324900_2326301_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2326419_2327172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2327460_2328138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004568488.1|2328164_2328944_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2328940_2329825_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2329842_2330622_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_014905828.1|2330606_2331365_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	50.8	5.2e-68
WP_023852762.1|2331502_2332138_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_014905678.1|2332405_2333422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930208.1|2333519_2334470_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811013.1|2334568_2335609_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.6	9.3e-92
WP_014905829.1|2335743_2337036_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	2.9e-66
WP_003811007.1|2338395_2338779_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2338796_2339384_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2339421_2340372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905830.1|2340470_2341319_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930521.1|2341355_2342129_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930519.1|2343209_2343986_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_014905831.1|2344140_2345745_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.8	2.7e-53
WP_003816541.1|2346125_2347250_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2347376_2348000_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2347996_2349898_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2349946_2350741_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2350753_2351755_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2351751_2352201_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2352250_2353099_-	hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|2353262_2354213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166182.1|2354245_2354815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2354858_2355809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905833.1|2355964_2356291_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2356287_2356569_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_023852885.1|2356568_2357045_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2357044_2358673_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2358669_2359014_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_003816550.1|2359013_2361947_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010930208.1|2363105_2364056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2364154_2364451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905834.1|2364557_2365475_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2365479_2366193_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2366206_2367178_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2368927_2369278_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014905835.1|2369281_2370469_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2370907_2371630_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010929956.1|2371923_2372874_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905836.1|2373735_2374731_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905837.1|2374770_2375976_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_003811478.1|2376319_2377531_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014905838.1|2377561_2378029_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_014905839.1|2378025_2379180_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_014905840.1|2379176_2380361_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_014905841.1|2380357_2382442_-	crotonase	NA	NA	NA	NA	NA
WP_014905842.1|2382452_2383427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905843.1|2383457_2384270_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_014905844.1|2385676_2386648_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_041166281.1|2386809_2387610_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446742.1|2387826_2388639_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	36.8	1.1e-07
WP_014905846.1|2388783_2389800_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905847.1|2389879_2390299_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2390804_2391755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166183.1|2391758_2392925_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811509.1|2393076_2393904_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811511.1|2393917_2394508_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905848.1|2394664_2395369_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	8.4e-12
WP_005012067.1|2395547_2396498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166283.1|2398061_2399213_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2399581_2399818_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2399881_2400049_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_014905850.1|2400162_2401956_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	4.8e-19
WP_010930208.1|2402253_2403204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NC_018518	Bordetella pertussis 18323, complete genome	4043846	2444113	2518892	4043846	tRNA,transposase	Catovirus(22.22%)	60	NA	NA
WP_014905866.1|2444113_2445064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166184.1|2445140_2446757_+	phosphoethanolamine transferase	NA	NA	NA	NA	NA
WP_003813224.1|2446735_2447848_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003813226.1|2447844_2448597_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010930875.1|2448593_2449445_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_010930876.1|2449437_2450541_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010930877.1|2450540_2454032_-	DNA polymerase III subunit alpha	NA	A0A0K1Y9G6	Streptomyces_phage	37.6	1.7e-185
WP_041166285.1|2454169_2455069_+	lipid A hydroxylase LpxO	NA	S4VR59	Pandoravirus	36.8	2.4e-35
WP_010930878.1|2455200_2459085_-	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	28.7	4.5e-46
WP_041166185.1|2459265_2460621_+	amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813239.1|2460694_2460967_+	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_010930880.1|2461020_2462901_+	DUF756 domain-containing protein	NA	NA	NA	NA	NA
WP_003813242.1|2462914_2463694_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_010930882.1|2463848_2464529_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_014905870.1|2464582_2466241_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813247.1|2466320_2467736_-	DNA recombination protein RmuC	NA	NA	NA	NA	NA
WP_010930885.1|2467861_2468521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813251.1|2468528_2469245_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
WP_003813253.1|2469249_2469606_-	arsenate reductase	NA	NA	NA	NA	NA
WP_003813256.1|2469602_2470412_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003813258.1|2470408_2471323_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003813260.1|2471319_2472447_-	polyamine ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	38.0	3.9e-27
WP_014905871.1|2472453_2473557_-	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930888.1|2473688_2474423_-	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA	NA
WP_003813267.1|2474412_2474838_-	group II truncated hemoglobin	NA	NA	NA	NA	NA
WP_049803247.1|2474837_2477297_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010930890.1|2477483_2478458_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_014905872.1|2478543_2479044_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930048.1|2479569_2480520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2480566_2481121_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2481188_2482034_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2482103_2483072_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_041166187.1|2483071_2485546_-	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA	NA
WP_041166188.1|2485718_2488565_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_014905874.1|2489217_2492448_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2492729_2493557_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2493590_2494286_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2494278_2495559_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023853218.1|2495604_2496546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2496527_2498228_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2498330_2499434_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2499464_2500220_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2500226_2501747_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_014905875.1|2501789_2502092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905645.1|2502088_2503039_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905876.1|2503251_2506104_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2506085_2506814_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_014905877.1|2506954_2508442_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	34.0	2.4e-48
WP_010930180.1|2508438_2508810_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2508827_2510141_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2510177_2510636_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2510590_2510731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930179.1|2510748_2511699_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2511695_2512709_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2512848_2513835_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2514193_2514901_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2515481_2516432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905878.1|2516606_2517281_+	hypothetical protein	NA	A0A0U4J8W4	Pseudomonas_phage	41.8	9.5e-37
WP_080019440.1|2517741_2517924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2517941_2518892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NC_018518	Bordetella pertussis 18323, complete genome	4043846	2695426	2755140	4043846	tRNA,holin,transposase	uncultured_Mediterranean_phage(60.0%)	53	NA	NA
WP_003810909.1|2695426_2695843_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2695953_2696586_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2696614_2697058_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2697079_2698171_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_162832304.1|2698225_2699017_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2699161_2699782_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2700030_2700504_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2701643_2702594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2702620_2703085_-	barstar family protein	NA	NA	NA	NA	NA
WP_014905912.1|2704277_2706566_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2706682_2707555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905913.1|2707597_2708752_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2708786_2709617_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2709700_2711245_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2711287_2711647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2711648_2712062_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2712102_2712420_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2712504_2713221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905914.1|2713484_2714906_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_014905915.1|2714972_2717696_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930525.1|2718028_2719045_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2719379_2720021_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2720111_2721548_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2721705_2722779_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_014905916.1|2722775_2723912_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	1.7e-86
WP_003809416.1|2724056_2724401_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2724467_2726348_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2726397_2727333_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930525.1|2727664_2728681_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2729602_2731030_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2731026_2732049_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_041166194.1|2732038_2732512_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2732652_2733540_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014905918.1|2733536_2735180_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2735176_2736184_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930525.1|2737014_2738031_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819753.1|2738178_2738769_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931097.1|2738859_2739165_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_023853546.1|2739632_2740640_+	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931095.1|2740636_2741512_+	membrane protein	NA	NA	NA	NA	NA
WP_010931094.1|2741586_2742987_-	MFS transporter	NA	NA	NA	NA	NA
WP_003809348.1|2743064_2743568_-	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931092.1|2743814_2744246_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931091.1|2744255_2745140_-	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_014905919.1|2745157_2748625_-	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_003819741.1|2748760_2749246_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_014905920.1|2749226_2749478_+	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_023853551.1|2749483_2749966_+	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_010931088.1|2749962_2750484_+	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_014905921.1|2750490_2751696_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931086.1|2751840_2752938_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931085.1|2752948_2754055_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2754189_2755140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NC_018518	Bordetella pertussis 18323, complete genome	4043846	2847506	2906655	4043846	transposase,protease	Staphylococcus_phage(11.11%)	54	NA	NA
WP_005015810.1|2847506_2848457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446301.1|2849231_2850089_-	EamA family transporter	NA	NA	NA	NA	NA
WP_014905934.1|2850267_2852247_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	44.2	5.5e-85
WP_010930730.1|2852458_2853409_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905935.1|2853507_2854848_-	MFS transporter	NA	NA	NA	NA	NA
WP_003821377.1|2854844_2855252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905936.1|2857372_2858032_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	37.6	7.4e-18
WP_010930920.1|2858136_2858478_-	DUF2325 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2858786_2859737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486084.1|2859733_2860687_-	CysB family HTH-type transcriptional regulator	NA	NA	NA	NA	NA
WP_010930923.1|2860786_2862253_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003821372.1|2862365_2863583_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003821371.1|2863722_2864643_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813765.1|2864639_2865752_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_003821370.1|2865805_2867305_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	39.3	1.0e-51
WP_003813769.1|2867322_2867778_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_003821368.1|2867808_2868135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905937.1|2868233_2868944_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_014905938.1|2869125_2870079_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930926.1|2870175_2871045_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_014905939.1|2871048_2872245_+	PLP-dependent lyase/thiolase	NA	NA	NA	NA	NA
WP_004566380.1|2872241_2873162_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813782.1|2873181_2873769_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_014905940.1|2873761_2874652_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2874648_2875410_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_003821360.1|2875415_2876300_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2876322_2878116_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_014905941.1|2878246_2879734_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2879771_2880830_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_041166199.1|2880829_2881330_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2881342_2881942_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2881938_2882439_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2882440_2883670_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2883859_2884099_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2884281_2885034_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2885035_2885971_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2886052_2887039_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2887038_2888097_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2888153_2888336_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2888387_2888981_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2889089_2889689_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2889685_2890396_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2890397_2891225_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_005013747.1|2891323_2892274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003821340.1|2892270_2892933_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_010929831.1|2892940_2893900_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_010929830.1|2894056_2894728_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_033446197.1|2894730_2895636_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_014905943.1|2896203_2899326_+	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_014905944.1|2899401_2900469_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_003813843.1|2902529_2903408_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_003821334.1|2903444_2904302_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_010931555.1|2904305_2905505_-	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_014486105.1|2905704_2906655_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NC_018518	Bordetella pertussis 18323, complete genome	4043846	2949900	3013056	4043846	transposase	Paramecium_bursaria_Chlorella_virus(15.38%)	58	NA	NA
WP_014905922.1|2949900_2950851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446154.1|2950949_2951654_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812921.1|2951782_2952700_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003812923.1|2952907_2953099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812927.1|2953179_2954151_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014905951.1|2954253_2955207_+	2-hydroxyacid dehydrogenase	NA	Q89388	Paramecium_bursaria_Chlorella_virus	26.6	5.9e-16
WP_010931528.1|2955353_2956079_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003820369.1|2956190_2957099_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812933.1|2957103_2957394_-	DUF3579 domain-containing protein	NA	NA	NA	NA	NA
WP_010931526.1|2957603_2958785_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.1	3.4e-21
WP_003812938.1|2958836_2959778_+	ornithine carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	26.4	1.1e-17
WP_003820367.1|2959928_2961266_+	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	81.7	1.4e-55
WP_003820366.1|2961350_2963261_-	potassium transporter Kup	NA	A7K9V6	Acanthocystis_turfacea_chlorella_virus	32.4	5.4e-69
WP_014905952.1|2963257_2964376_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.2	2.0e-15
WP_003812947.1|2964434_2965106_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_014905953.1|2965188_2965656_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931525.1|2965655_2966633_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931524.1|2966634_2967435_-	energy transducer TonB	NA	NA	NA	NA	NA
WP_003812968.1|2967931_2968204_-	HU family DNA-binding protein	NA	B5TA87	Burkholderia_phage	57.8	1.1e-20
WP_003812970.1|2968524_2969205_-	Fe2+-dependent dioxygenase	NA	Q5GQB0	Synechococcus_phage	29.1	4.9e-17
WP_010931523.1|2969245_2970490_-	cystathionine gamma-synthase family protein	NA	NA	NA	NA	NA
WP_003812973.1|2970543_2971281_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_024000927.1|2971405_2973835_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	31.6	3.0e-64
WP_014905954.1|2974387_2974969_-	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_010931520.1|2975308_2975752_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014905955.1|2975876_2976824_+	AEC family transporter	NA	NA	NA	NA	NA
WP_041166202.1|2976965_2978192_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_010931517.1|2978267_2979929_+	FMN-binding glutamate synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2980027_2980978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2981076_2982027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928587.1|2982036_2983467_-	cardiolipin synthase B	NA	NA	NA	NA	NA
WP_010931516.1|2983454_2984054_-	membrane protein	NA	NA	NA	NA	NA
WP_010931515.1|2984385_2985360_+	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA	NA
WP_003812993.1|2986973_2987231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812995.1|2987247_2987484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812997.1|2987813_2988080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486106.1|2988101_2988425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813001.1|2988460_2989066_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010931513.1|2989231_2990659_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	40.0	6.5e-19
WP_003813004.1|2990673_2991321_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2991402_2992353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166203.1|2992451_2993570_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_041166204.1|2993559_2994561_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|2994666_2996178_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|2996174_2997479_-	imelysin	NA	NA	NA	NA	NA
WP_041166294.1|2997590_2998148_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930432.1|2998418_2998973_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|2999428_2999644_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_041166295.1|2999898_3002496_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	2.0e-21
WP_014905960.1|3002492_3003680_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|3004343_3004958_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_033447671.1|3005046_3006168_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_003809954.1|3006185_3007091_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|3007983_3008934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010928449.1|3008930_3009557_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_010930427.1|3009618_3010470_+	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010930425.1|3011169_3011934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3012105_3013056_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NC_018518	Bordetella pertussis 18323, complete genome	4043846	3187124	3252743	4043846	transposase,protease	Klebsiella_phage(16.67%)	51	NA	NA
WP_005013747.1|3187124_3188075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813056.1|3191083_3192157_-	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A2I6UFP9	Klebsiella_phage	46.4	3.9e-77
WP_010931196.1|3192413_3193874_-|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_010931197.1|3193884_3194715_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_010931198.1|3194839_3195211_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_005012067.1|3195309_3196260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905989.1|3196884_3197865_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3197918_3198254_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3198298_3199063_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3199086_3199827_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3199834_3201388_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3201422_3202400_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_041166209.1|3202672_3203254_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
WP_094145972.1|3203305_3210208_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3210654_3210786_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3211051_3211258_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_014905991.1|3212262_3212922_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3212949_3214095_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003807743.1|3214235_3214571_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3214645_3215506_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3215769_3216471_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807740.1|3216640_3217036_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3217145_3218096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852861.1|3219409_3220237_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_010931591.1|3220524_3221019_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_010931590.1|3221157_3222357_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931589.1|3222443_3223370_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_010931588.1|3223635_3223809_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003818337.1|3224034_3225162_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010931587.1|3226167_3228345_+	malate synthase G	NA	NA	NA	NA	NA
WP_003818333.1|3228380_3229025_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931585.1|3229346_3230663_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818330.1|3230690_3231482_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	2.6e-33
WP_014905992.1|3231469_3232240_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_041166212.1|3232303_3233305_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905994.1|3233330_3234302_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931581.1|3234460_3235279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003806967.1|3236581_3237568_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931580.1|3237606_3239097_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_010931579.1|3239376_3240210_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_126967223.1|3240314_3240794_-	UTRA domain-containing protein	NA	NA	NA	NA	NA
WP_010930742.1|3240811_3241762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905995.1|3242211_3243228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879594.1|3243256_3243613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247383.1|3243597_3243945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852866.1|3243963_3244467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049805776.1|3244497_3246627_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003806953.1|3246859_3247360_-	single-stranded DNA-binding protein	NA	F8TUL2	EBPR_podovirus	65.2	3.4e-39
WP_014905997.1|3247592_3248777_-	MFS transporter	NA	NA	NA	NA	NA
WP_014905998.1|3248932_3251791_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.0	1.9e-296
WP_005013747.1|3251792_3252743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NC_018518	Bordetella pertussis 18323, complete genome	4043846	3294362	3333146	4043846	tRNA,transposase	Acinetobacter_phage(25.0%)	32	NA	NA
WP_005012067.1|3294362_3295313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_080019449.1|3295417_3296194_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010929962.1|3296180_3298562_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_014906004.1|3298554_3299064_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	8.8e-19
WP_005013747.1|3299282_3300233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929960.1|3300995_3301991_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003819054.1|3302009_3303002_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807624.1|3303242_3303803_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|3303807_3304134_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_014906005.1|3304170_3304983_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003807618.1|3304993_3306076_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929957.1|3306162_3307437_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_005013747.1|3308159_3309110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814555.1|3309305_3310778_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|3310788_3311199_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_014906006.1|3311262_3312309_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|3312415_3313294_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906007.1|3313307_3314489_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|3314550_3316242_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_010930048.1|3316238_3317189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3317287_3318238_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|3318346_3319243_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3321520_3323746_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3323910_3324999_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3324955_3325609_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3325656_3326454_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_041166214.1|3326967_3328116_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_003814535.1|3328172_3328478_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3328506_3328941_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3330184_3330895_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3330909_3331821_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|3332195_3333146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NC_018518	Bordetella pertussis 18323, complete genome	4043846	3349452	3390135	4043846	transposase	Bacillus_virus(16.67%)	40	NA	NA
WP_005012067.1|3349452_3350403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166215.1|3351438_3351981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162471243.1|3352178_3352349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3352366_3353317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809019.1|3353313_3354102_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_003809022.1|3355227_3355662_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|3355658_3356669_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_041166216.1|3356712_3357639_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|3357923_3358292_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|3358344_3358491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905668.1|3358508_3359459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906012.1|3359503_3361930_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.6	3.1e-85
WP_010931164.1|3361978_3362671_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|3362743_3363943_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_014906013.1|3364062_3365013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906014.1|3365009_3365939_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3366065_3366902_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3367414_3368524_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3368585_3369536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819553.1|3369698_3370511_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3370524_3371289_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3371301_3372648_-	MFS transporter	NA	NA	NA	NA	NA
WP_014906015.1|3372673_3373603_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3373718_3374624_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929956.1|3374620_3375571_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931170.1|3375682_3376465_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3376468_3377560_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3377665_3379141_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3379282_3379831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3379846_3380308_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906016.1|3380408_3381398_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3381696_3382398_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3382436_3383810_-	amidase	NA	NA	NA	NA	NA
WP_041166218.1|3383848_3384820_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003808997.1|3384972_3385875_+	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_010931178.1|3385822_3387043_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931179.1|3387039_3387549_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010926062.1|3387538_3388234_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931181.1|3388304_3389174_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3389184_3390135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NC_018518	Bordetella pertussis 18323, complete genome	4043846	3457282	3542389	4043846	tRNA,holin,transposase,protease	Planktothrix_phage(15.38%)	81	NA	NA
WP_005012808.1|3457282_3458233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3458677_3458989_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3458988_3459519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162268687.1|3459475_3459664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|3459681_3460632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3460921_3461386_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3461400_3462906_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3463159_3464767_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3464822_3465728_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3466168_3467119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|3467257_3468010_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|3468284_3469973_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_023995245.1|3470061_3471252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014906030.1|3471266_3472361_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.0	7.1e-50
WP_014906031.1|3472357_3474421_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|3474496_3475177_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_014906032.1|3475454_3476828_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|3476829_3477849_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|3477912_3478884_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905391.1|3478948_3479899_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807159.1|3479997_3480558_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3480982_3481288_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3481301_3482636_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_005013747.1|3482767_3483718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166222.1|3483697_3484246_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807164.1|3484393_3484858_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_003818423.1|3485000_3486110_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807166.1|3486386_3486890_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_019248127.1|3487063_3487228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931288.1|3487218_3487941_+	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_010931287.1|3487937_3488834_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931286.1|3488830_3489766_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247300.1|3489726_3490395_+	DUF1007 family protein	NA	NA	NA	NA	NA
WP_003818434.1|3490385_3491354_+	putative membrane protein	NA	NA	NA	NA	NA
WP_014906033.1|3491402_3493544_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931282.1|3493556_3494537_-	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931281.1|3494551_3495244_-	DUF484 family protein	NA	NA	NA	NA	NA
WP_003807183.1|3495270_3496182_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_014906034.1|3496224_3497115_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_014906035.1|3497111_3497966_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010925730.1|3498249_3499413_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_003818441.1|3499523_3499775_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_003807194.1|3499854_3500895_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_010931278.1|3501174_3502593_+	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_010931277.1|3502663_3502999_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3502998_3503841_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005012808.1|3503939_3504890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929594.1|3504983_3505883_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023852650.1|3505962_3506724_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003817737.1|3506720_3507410_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_019247224.1|3507434_3508025_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_010929592.1|3508030_3508765_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_014906036.1|3508822_3509887_-	porin	NA	NA	NA	NA	NA
WP_029443813.1|3509998_3511255_-	muropeptide transporter	NA	NA	NA	NA	NA
WP_010930048.1|3511297_3512248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817748.1|3512383_3512998_-	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929590.1|3512994_3514242_-	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_014906037.1|3516107_3516344_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929589.1|3516315_3516864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014906038.1|3518537_3519455_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|3519451_3519700_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|3519696_3520902_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|3520974_3521970_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014906039.1|3521992_3523213_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|3523209_3523854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929483.1|3525584_3526394_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|3526698_3527652_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_005012067.1|3527750_3528701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815921.1|3528801_3529623_+	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929634.1|3529728_3530769_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_003815926.1|3530811_3532104_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815927.1|3532114_3532990_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003815929.1|3532986_3533787_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_014905678.1|3533862_3534879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815930.1|3535157_3535475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815933.1|3535565_3535913_-	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|3536200_3537883_+|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010927242.1|3537892_3538576_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_010929628.1|3538637_3539267_+	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010929627.1|3539348_3540542_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_014906041.1|3541438_3542389_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NC_018518	Bordetella pertussis 18323, complete genome	4043846	3605188	3659551	4043846	tRNA,transposase	Flavobacterium_phage(16.67%)	52	NA	NA
WP_005013747.1|3605188_3606139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906058.1|3606237_3606693_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003815479.1|3607881_3608589_-	haloacid dehalogenase type II	NA	NA	NA	NA	NA
WP_014906059.1|3608817_3609762_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906060.1|3609777_3610746_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014906061.1|3611108_3612704_+	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	38.3	6.8e-09
WP_003815472.1|3612731_3613277_+	DUF2244 domain-containing protein	NA	NA	NA	NA	NA
WP_014906062.1|3613308_3614019_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906063.1|3614217_3615414_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_004567894.1|3616269_3616962_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3617060_3618011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906064.1|3618007_3618382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014906065.1|3618378_3620058_-	ATP-dependent acyl-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.4	1.8e-20
WP_010929742.1|3620067_3621084_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929743.1|3621096_3621510_-	Zn-ribbon domain-containing OB-fold protein	NA	NA	NA	NA	NA
WP_010929744.1|3621506_3622703_-	thiolase domain-containing protein	NA	NA	NA	NA	NA
WP_010929745.1|3622789_3623674_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_014906066.1|3623686_3624664_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014906067.1|3625832_3627152_+	DUF3300 domain-containing protein	NA	NA	NA	NA	NA
WP_010929747.1|3627148_3627979_+	DUF2950 family protein	NA	NA	NA	NA	NA
WP_010929749.1|3629221_3629809_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	39.5	1.4e-20
WP_003815451.1|3629829_3630480_-	DNA oxidative demethylase AlkB	NA	NA	NA	NA	NA
WP_010929750.1|3630491_3631214_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA	NA
WP_003817864.1|3631358_3631859_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_014906068.1|3631862_3632651_-	heme ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_041166308.1|3632665_3633610_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_041166226.1|3633653_3634511_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929754.1|3634519_3635566_-	hemin-degrading factor	NA	NA	NA	NA	NA
WP_029443809.1|3635601_3638214_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_019247195.1|3638346_3639321_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003815434.1|3639299_3639809_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_023852637.1|3639982_3640174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815429.1|3640487_3640805_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_004567880.1|3640806_3641106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815425.1|3641124_3641430_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929758.1|3641440_3642373_+	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930179.1|3642369_3643320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_039251062.1|3643394_3644339_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080019464.1|3644552_3645734_-	Rieske 2Fe-2S domain-containing protein	NA	S4S2K9	Puniceispirillum_phage	33.7	1.9e-56
WP_010930048.1|3645706_3646657_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906071.1|3648488_3649316_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931596.1|3649363_3650311_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010931595.1|3651618_3652518_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931594.1|3652611_3653376_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_014906072.1|3653376_3654294_+	prolyl aminopeptidase	NA	NA	NA	NA	NA
WP_003807812.1|3654304_3654505_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_041166227.1|3654646_3655096_+	peptidoglycan-binding protein LysM	NA	G3MBQ1	Bacillus_virus	46.9	2.0e-06
WP_014906074.1|3655221_3656631_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_010929606.1|3656736_3657579_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_003807805.1|3657580_3657832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003807804.1|3657920_3658502_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_005015810.1|3658600_3659551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NC_018518	Bordetella pertussis 18323, complete genome	4043846	3663872	3720374	4043846	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	48	NA	NA
WP_005012808.1|3663872_3664823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906075.1|3666266_3667175_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|3667152_3667782_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|3668064_3669495_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|3669528_3670158_+	LysE family transporter	NA	NA	NA	NA	NA
WP_041166228.1|3670206_3671793_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	7.0e-14
WP_003815897.1|3671817_3672501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|3672582_3673059_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|3673265_3674216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931297.1|3674306_3674735_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853362.1|3674731_3676168_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_010931296.1|3676887_3677367_+	membrane protein	NA	NA	NA	NA	NA
WP_004566249.1|3677518_3677818_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931294.1|3678078_3678660_-	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_010925959.1|3678747_3679632_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003808340.1|3679767_3680523_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003808339.1|3680544_3681225_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010931293.1|3681236_3682346_+	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_041166309.1|3682352_3683831_-	phospholipase D family protein	NA	NA	NA	NA	NA
WP_005012808.1|3684143_3685094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|3685895_3687122_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|3687121_3687535_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|3687724_3688666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050849198.1|3689089_3690064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|3690120_3690702_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_014906079.1|3690714_3691017_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|3691135_3692194_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|3692228_3693500_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|3694129_3695311_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_080019455.1|3695331_3695715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014906080.1|3695732_3696683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|3696785_3697421_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_010929674.1|3697417_3698311_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014906081.1|3698705_3699806_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|3699887_3700262_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_014906082.1|3700321_3703186_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.5	4.0e-262
WP_014906083.1|3703330_3704071_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|3704140_3705352_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|3705380_3706349_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930048.1|3706860_3707811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814720.1|3709523_3710582_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_014906084.1|3710711_3711227_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929785.1|3711422_3712628_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|3712624_3714136_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|3714151_3715465_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|3715655_3715835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|3716244_3716979_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_005012067.1|3719423_3720374_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
