assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000307185.1_ASM30718v1	NC_018712	Streptococcus dysgalactiae subsp. equisimilis RE378, complete genome	1	848453-848576	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	Orphan	CAACACCCGAAGGCCAATCAACGCCTGAAGTTGACGAAGT	40	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	NA,NA|57aa|down_5|NC_018712.1_854839_855010_+,NA|248aa|down_7|NC_018712.1_857106_857850_+	NA|137aa|up_9|NC_018712.1_833069_833480_+	PRK09218, PRK09218, peptide deformylase; Validated	NA|675aa|up_8|NC_018712.1_833667_835692_-	cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain	NA|223aa|up_7|NC_018712.1_836562_837231_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|411aa|up_6|NC_018712.1_837239_838472_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|293aa|up_5|NC_018712.1_838765_839644_+	TIGR00549, Mevalonate_kinase, mevalonate kinase	NA|315aa|up_4|NC_018712.1_839625_840570_+	TIGR01240, Diphosphomevalonate_decarboxylase, diphosphomevalonate decarboxylase	NA|338aa|up_3|NC_018712.1_840562_841576_+	COG1577, ERG12, Mevalonate kinase [Lipid metabolism]	NA|331aa|up_2|NC_018712.1_841562_842555_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|509aa|up_1|NC_018712.1_842700_844227_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|1126aa|up_0|NC_018712.1_844678_848056_+	pfam17961, Big_8, Bacterial Ig domain	NA|506aa|down_0|NC_018712.1_849040_850558_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|426aa|down_1|NC_018712.1_850745_852023_-	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|394aa|down_2|NC_018712.1_852003_853185_-	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|280aa|down_3|NC_018712.1_853402_854242_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|166aa|down_4|NC_018712.1_854322_854820_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|57aa|down_5|NC_018712.1_854839_855010_+	NA	NA|200aa|down_6|NC_018712.1_856363_856963_+	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|248aa|down_7|NC_018712.1_857106_857850_+	NA	NA|700aa|down_8|NC_018712.1_857906_860006_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|167aa|down_9|NC_018712.1_861409_861910_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed
GCF_000307185.1_ASM30718v1	NC_018712	Streptococcus dysgalactiae subsp. equisimilis RE378, complete genome	2	1167100-1167597	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	Type II-B,Type II-C,Type II-A	GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC,GTTTTGGGACCATTCAAAACAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	7,7,6	7	TypeII-B,TypeII-C,TypeII-A	cas3,DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	NA,NA|214aa|down_8|NC_018712.1_1177497_1178139_-	NA|164aa|up_9|NC_018712.1_1158974_1159466_-	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|142aa|up_8|NC_018712.1_1159492_1159918_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|340aa|up_7|NC_018712.1_1160124_1161144_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|390aa|up_6|NC_018712.1_1161254_1162424_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|99aa|up_5|NC_018712.1_1162613_1162910_-	pfam08951, EntA_Immun, Enterocin A Immunity	NA|77aa|up_4|NC_018712.1_1162909_1163140_-	pfam01721, Bacteriocin_II, Class II bacteriocin	NA|217aa|up_3|NC_018712.1_1163347_1163998_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|146aa|up_2|NC_018712.1_1164010_1164448_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|611aa|up_1|NC_018712.1_1164623_1166456_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|153aa|up_0|NC_018712.1_1166525_1166984_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	csn2|221aa|down_0|NC_018712.1_1167699_1168362_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NC_018712.1_1168351_1168693_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_2|NC_018712.1_1168689_1169559_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1372aa|down_3|NC_018712.1_1169558_1173674_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|210aa|down_4|NC_018712.1_1174150_1174780_-	COG4478, COG4478, Predicted membrane protein [Function unknown]	NA|255aa|down_5|NC_018712.1_1174779_1175544_-	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|251aa|down_6|NC_018712.1_1175543_1176296_-	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|377aa|down_7|NC_018712.1_1176305_1177436_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|214aa|down_8|NC_018712.1_1177497_1178139_-	NA	NA|452aa|down_9|NC_018712.1_1178262_1179618_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000307185.1_ASM30718v1	NC_018712	Streptococcus dysgalactiae subsp. equisimilis RE378, complete genome	3	1531267-1532165	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	Type I-U, Type I-U?,Type I-C	ATTTCAATCCACTCACCCGCGAAGGGTGAGAC,ATTTCAATCCACTCACCCGCGAAGGGTGAGAC,ATTTCAATCCACTCACCCGCGAAGGGTGAGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	13,13,12	13	TypeI-U,TypeI-U?,TypeI-C	cas3,DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	NA,NA	NA|158aa|up_9|NC_018712.1_1521350_1521824_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_8|NC_018712.1_1522001_1522718_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_7|NC_018712.1_1522731_1523811_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_6|NC_018712.1_1523883_1525617_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_5|NC_018712.1_1525613_1526354_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_4|NC_018712.1_1526441_1527548_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_3|NC_018712.1_1527590_1528214_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_2|NC_018712.1_1528226_1528937_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	NA|311aa|up_1|NC_018712.1_1529157_1530090_-	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family	NA|320aa|up_0|NC_018712.1_1530181_1531141_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	cas2|98aa|down_0|NC_018712.1_1532313_1532607_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NC_018712.1_1532617_1533643_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NC_018712.1_1533639_1534314_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NC_018712.1_1534315_1535164_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NC_018712.1_1535168_1537064_-	cd09642, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|243aa|down_5|NC_018712.1_1537063_1537792_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|809aa|down_6|NC_018712.1_1538054_1540481_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NC_018712.1_1540747_1543396_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NC_018712.1_1543397_1543961_-	pfam13238, AAA_18, AAA domain	NA|197aa|down_9|NC_018712.1_1543957_1544548_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
GCF_000307185.1_ASM30718v1	NC_018712	Streptococcus dysgalactiae subsp. equisimilis RE378, complete genome	4	1630161-1630236	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	Unclear	AGCAACTGATACTTGTTTAACATCA	25	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,csa3,DinG,csm6,csn2,cas2,cas1,cas9,cas4,cas7,cas8c,cas5	NA|153aa|up_7|NC_018712.1_1623193_1623652_-,NA|76aa|up_6|NC_018712.1_1623712_1623940_-,NA|166aa|up_5|NC_018712.1_1624183_1624681_-,NA|251aa|up_4|NC_018712.1_1624694_1625447_-,NA|162aa|up_3|NC_018712.1_1625495_1625981_-,NA|76aa|up_2|NC_018712.1_1626086_1626314_-,NA|100aa|down_0|NC_018712.1_1632336_1632636_-,NA|62aa|down_2|NC_018712.1_1633212_1633398_-,NA|55aa|down_4|NC_018712.1_1634426_1634591_-,NA|148aa|down_5|NC_018712.1_1634697_1635141_-,NA|124aa|down_7|NC_018712.1_1635847_1636219_-	NA|784aa|up_9|NC_018712.1_1620440_1622792_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|120aa|up_8|NC_018712.1_1622772_1623132_-	pfam12666, PrgI, PrgI family protein	NA|153aa|up_7|NC_018712.1_1623193_1623652_-	NA	NA|76aa|up_6|NC_018712.1_1623712_1623940_-	NA	NA|166aa|up_5|NC_018712.1_1624183_1624681_-	NA	NA|251aa|up_4|NC_018712.1_1624694_1625447_-	NA	NA|162aa|up_3|NC_018712.1_1625495_1625981_-	NA	NA|76aa|up_2|NC_018712.1_1626086_1626314_-	NA	NA|933aa|up_1|NC_018712.1_1626588_1629387_-	pfam18220, BspA_v, Adhesin BspA variable domain	NA|207aa|up_0|NC_018712.1_1629453_1630074_-	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional	NA|100aa|down_0|NC_018712.1_1632336_1632636_-	NA	NA|66aa|down_1|NC_018712.1_1633018_1633216_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|62aa|down_2|NC_018712.1_1633212_1633398_-	NA	NA|342aa|down_3|NC_018712.1_1633399_1634425_-	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|55aa|down_4|NC_018712.1_1634426_1634591_-	NA	NA|148aa|down_5|NC_018712.1_1634697_1635141_-	NA	NA|86aa|down_6|NC_018712.1_1635406_1635664_-	pfam12961, DUF3850, Domain of Unknown Function with PDB structure (DUF3850)	NA|124aa|down_7|NC_018712.1_1635847_1636219_-	NA	NA|222aa|down_8|NC_018712.1_1636327_1636993_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	cas3|442aa|down_9|NC_018712.1_1636964_1638290_-	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
