assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000307835.1_ASM30783v1	NC_018938	Helicobacter pylori Rif2, complete sequence	1	350475-350601	1	CRISPRCasFinder	no	cas2	cas3,cas2,cas14j,DEDDh	Unclear	CTCTCTAGCGTTACTGAAGAGATTATTTCAAAAAAAC	37	0	0	NA	NA	NA	1	1	Unclear	cas3,cas2,cas14j,DEDDh	NA|102aa|up_0|NC_018938.1_349783_350089_+,NA|89aa|down_1|NC_018938.1_351034_351301_+,NA|261aa|down_4|NC_018938.1_353223_354006_+	NA|518aa|up_9|NC_018938.1_341567_343121_+	COG3980, spsG, Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]	NA|181aa|up_8|NC_018938.1_343117_343660_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_7|NC_018938.1_343592_344531_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_6|NC_018938.1_344527_345310_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_5|NC_018938.1_345558_346551_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_4|NC_018938.1_346575_347382_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_3|NC_018938.1_347378_347612_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_2|NC_018938.1_347623_348424_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_1|NC_018938.1_348420_348825_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|102aa|up_0|NC_018938.1_349783_350089_+	NA	NA|119aa|down_0|NC_018938.1_350690_351047_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|89aa|down_1|NC_018938.1_351034_351301_+	NA	NA|129aa|down_2|NC_018938.1_351606_351993_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|112aa|down_3|NC_018938.1_352768_353104_+	COG4499, COG4499, Predicted membrane protein [Function unknown]	NA|261aa|down_4|NC_018938.1_353223_354006_+	NA	NA|299aa|down_5|NC_018938.1_353999_354896_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_6|NC_018938.1_354895_356446_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_7|NC_018938.1_356454_358071_-	PRK05380, pyrG, CTP synthetase; Validated	NA|223aa|down_8|NC_018938.1_358330_358999_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_9|NC_018938.1_359042_360746_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)
GCF_000307835.1_ASM30783v1	NC_018938	Helicobacter pylori Rif2, complete sequence	2	556181-556468	1	PILER-CR	no		cas3,cas2,cas14j,DEDDh	Orphan	CTTCCTCTAAAAGTTTTCTCGCTTCAGGCGTGAGTAATTTCTCGCATTCTTTTTTCTCTTTTT	63	1	1	556244-556297	NC_018938.1_555914-555967	NA	2	2	Orphan	cas3,cas2,cas14j,DEDDh	NA|116aa|up_5|NC_018938.1_547335_547683_+,NA|482aa|up_4|NC_018938.1_548141_549587_+,NA|536aa|down_1|NC_018938.1_561632_563240_-,NA|219aa|down_3|NC_018938.1_564388_565045_+,NA|50aa|down_5|NC_018938.1_565773_565923_+,NA|127aa|down_7|NC_018938.1_567149_567530_-,NA|115aa|down_8|NC_018938.1_567962_568307_-,NA|377aa|down_9|NC_018938.1_568730_569861_+	NA|444aa|up_9|NC_018938.1_543015_544347_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|302aa|up_8|NC_018938.1_544346_545252_+	COG1159, Era, GTPase [General function prediction only]	NA|331aa|up_7|NC_018938.1_545248_546241_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|277aa|up_6|NC_018938.1_546329_547160_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|116aa|up_5|NC_018938.1_547335_547683_+	NA	NA|482aa|up_4|NC_018938.1_548141_549587_+	NA	NA|170aa|up_3|NC_018938.1_549596_550106_+	pfam16494, Na_Ca_ex_C, C-terminal extension of sodium/calcium exchanger domain	NA|749aa|up_2|NC_018938.1_550224_552471_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|331aa|up_1|NC_018938.1_552479_553472_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|200aa|up_0|NC_018938.1_553476_554076_-	pfam09053, CagZ, CagZ	NA|523aa|down_0|NC_018938.1_560011_561580_-	COG3504, VirB9, Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion]	NA|536aa|down_1|NC_018938.1_561632_563240_-	NA	NA|253aa|down_2|NC_018938.1_563244_564003_-	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|219aa|down_3|NC_018938.1_564388_565045_+	NA	NA|224aa|down_4|NC_018938.1_565080_565752_+	pfam13117, Cag12, Cag pathogenicity island protein Cag12	NA|50aa|down_5|NC_018938.1_565773_565923_+	NA	NA|197aa|down_6|NC_018938.1_566133_566724_-	pfam16707, CagS, Cag pathogenicity island protein S of Helicobacter pylori	NA|127aa|down_7|NC_018938.1_567149_567530_-	NA	NA|115aa|down_8|NC_018938.1_567962_568307_-	NA	NA|377aa|down_9|NC_018938.1_568730_569861_+	NA
GCF_000307835.1_ASM30783v1	NC_018938	Helicobacter pylori Rif2, complete sequence	3	980288-980429	2	PILER-CR	no		cas3,cas2,cas14j,DEDDh	Orphan	TTCAATCAAGGGACTTATAACTTTAATAGCA	31	0	0	NA	NA	I-B	2	2	Orphan	cas3,cas2,cas14j,DEDDh	NA|202aa|up_9|NC_018938.1_960902_961508_+,NA|220aa|down_8|NC_018938.1_993525_994185_+	NA|202aa|up_9|NC_018938.1_960902_961508_+	NA	NA|384aa|up_8|NC_018938.1_961488_962640_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_7|NC_018938.1_962643_964671_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|516aa|up_6|NC_018938.1_965189_966737_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|530aa|up_5|NC_018938.1_966758_968348_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_4|NC_018938.1_969250_970795_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|144aa|up_3|NC_018938.1_973737_974169_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NC_018938.1_974173_977431_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NC_018938.1_977529_978222_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NC_018938.1_978365_979364_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|370aa|down_0|NC_018938.1_987085_988195_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NC_018938.1_988254_988461_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NC_018938.1_988616_989198_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NC_018938.1_989194_990340_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|317aa|down_4|NC_018938.1_990308_991259_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NC_018938.1_991259_991802_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NC_018938.1_991817_992729_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NC_018938.1_992725_993529_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NC_018938.1_993525_994185_+	NA	NA|201aa|down_9|NC_018938.1_994186_994789_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_000307835.1_ASM30783v1	NC_018938	Helicobacter pylori Rif2, complete sequence	4	1166569-1166657	2	CRISPRCasFinder	no	cas14j	cas3,cas2,cas14j,DEDDh	Unclear	CATGCGAGAAGTAGTGGTTCAAGAACATT	29	0	0	NA	NA	NA	1	1	TypeV	cas3,cas2,cas14j,DEDDh	NA|113aa|up_9|NC_018938.1_1156432_1156771_+,NA|436aa|down_0|NC_018938.1_1167887_1169195_+	NA|113aa|up_9|NC_018938.1_1156432_1156771_+	NA	cas14j|428aa|up_8|NC_018938.1_1156739_1158023_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|149aa|up_7|NC_018938.1_1158074_1158521_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|291aa|up_6|NC_018938.1_1158734_1159607_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|209aa|up_5|NC_018938.1_1159676_1160303_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NC_018938.1_1160321_1162148_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NC_018938.1_1162213_1163491_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NC_018938.1_1163501_1164185_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NC_018938.1_1164171_1165182_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NC_018938.1_1165343_1166390_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NC_018938.1_1167887_1169195_+	NA	NA|221aa|down_1|NC_018938.1_1169201_1169864_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NC_018938.1_1170153_1170714_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NC_018938.1_1170729_1171122_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NC_018938.1_1171131_1172355_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NC_018938.1_1172367_1173312_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NC_018938.1_1173421_1174744_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NC_018938.1_1174809_1175643_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NC_018938.1_1175653_1177630_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|229aa|down_9|NC_018938.1_1177699_1178386_-	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional
