assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	1	327228-327346	1	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	CCCCTTGTCCCCCTTGTCCTCCTTGTCCCCCTT	33	1	12	327261-327313|327261-327313|327261-327313|327261-327313|327261-327313|327261-327313|327261-327313|327261-327313|327261-327313|327261-327313|327261-327313|327261-327313	NC_019695.1_1833421-1833369|NC_019695.1_1970319-1970267|NC_019695.1_4757116-4757064|NC_019695.1_5340838-5340786|NC_019695.1_5514195-5514143|NC_019695.1_1093050-1093102|NC_019695.1_3650629-3650681|NC_019695.1_3751826-3751878|NC_019695.1_1150486-1150434|NC_019695.1_2546750-2546802|NC_019695.1_5528439-5528491|NC_019695.1_5540469-5540521	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|51aa|up_7|NC_019695.1_321520_321673_-,NA|98aa|up_1|NC_019695.1_325806_326100_+,NA|72aa|down_2|NC_019695.1_329486_329702_-,NA|62aa|down_5|NC_019695.1_332087_332273_-	NA|443aa|up_9|NC_019695.1_319898_321227_-	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|63aa|up_8|NC_019695.1_321331_321520_+	COG4572, ChaB, Putative cation transport regulator [General function prediction only]	NA|51aa|up_7|NC_019695.1_321520_321673_-	NA	NA|218aa|up_6|NC_019695.1_321697_322351_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|242aa|up_5|NC_019695.1_322465_323191_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|81aa|up_4|NC_019695.1_323524_323767_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|463aa|up_3|NC_019695.1_323878_325267_-	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|126aa|up_2|NC_019695.1_325384_325762_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|98aa|up_1|NC_019695.1_325806_326100_+	NA	NA|152aa|up_0|NC_019695.1_326255_326711_-	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	NA|472aa|down_0|NC_019695.1_327382_328798_-	TIGR00479, 23S_rRNA_uracil1939-C5-methyltransferase_RlmD, 23S rRNA (uracil-5-)-methyltransferase RumA	NA|162aa|down_1|NC_019695.1_328875_329361_+	cd12125, APC_alpha, Allophycocyanin alpha subunit of the phycobilisome core	NA|72aa|down_2|NC_019695.1_329486_329702_-	NA	NA|502aa|down_3|NC_019695.1_330084_331590_-	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism]	NA|131aa|down_4|NC_019695.1_331708_332101_-	COG3654, Doc, Prophage maintenance system killer protein [General function prediction only]	NA|62aa|down_5|NC_019695.1_332087_332273_-	NA	NA|345aa|down_6|NC_019695.1_332333_333368_-	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|455aa|down_7|NC_019695.1_333580_334945_+	PRK14333, PRK14333, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|214aa|down_8|NC_019695.1_335031_335673_+	pfam03992, ABM, Antibiotic biosynthesis monooxygenase	NA|132aa|down_9|NC_019695.1_335794_336190_+	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	2	474931-475158	1	PILER-CR	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	AGGTTTGGGAAAATGGGAAGAAGCGATCGTCGATTATAAAAAA	43	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|64aa|up_2|NC_019695.1_472137_472329_-,NA|85aa|down_0|NC_019695.1_475689_475944_+,NA|559aa|down_1|NC_019695.1_476227_477904_-,NA|74aa|down_4|NC_019695.1_480067_480289_-	NA|1051aa|up_9|NC_019695.1_463062_466215_-	cd06550, TM_ABC_iron-siderophores_like, Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+	NA|71aa|up_8|NC_019695.1_466631_466844_+	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional	NA|367aa|up_7|NC_019695.1_466972_468073_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|340aa|up_6|NC_019695.1_468069_469089_-	cd07302, CHD, cyclase homology domain	NA|172aa|up_5|NC_019695.1_469072_469588_-	cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)	NA|636aa|up_4|NC_019695.1_469609_471517_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|109aa|up_3|NC_019695.1_471640_471967_+	PRK02877, PRK02877, hypothetical protein; Provisional	NA|64aa|up_2|NC_019695.1_472137_472329_-	NA	NA|257aa|up_1|NC_019695.1_472450_473221_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|372aa|up_0|NC_019695.1_473485_474601_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|85aa|down_0|NC_019695.1_475689_475944_+	NA	NA|559aa|down_1|NC_019695.1_476227_477904_-	NA	NA|316aa|down_2|NC_019695.1_478076_479024_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|140aa|down_3|NC_019695.1_479660_480080_-	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	NA|74aa|down_4|NC_019695.1_480067_480289_-	NA	NA|87aa|down_5|NC_019695.1_480594_480855_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|222aa|down_6|NC_019695.1_480921_481587_-	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|857aa|down_7|NC_019695.1_481599_484170_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|330aa|down_8|NC_019695.1_484276_485266_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|364aa|down_9|NC_019695.1_485438_486530_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	3	746309-746404	2	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	AAAAAGGGGGGCAAAGATTCGCGAAACG	28	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA,NA|179aa|down_5|NC_019695.1_751493_752030_-	NA|300aa|up_9|NC_019695.1_733160_734060_+	PRK12928, PRK12928, lipoyl synthase; Provisional	NA|51aa|up_8|NC_019695.1_734253_734406_+	pfam08078, PsaX, PsaX family	NA|289aa|up_7|NC_019695.1_734480_735347_-	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|635aa|up_6|NC_019695.1_735557_737462_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|747aa|up_5|NC_019695.1_737723_739964_+	PRK15347, PRK15347, two component system sensor kinase	NA|273aa|up_4|NC_019695.1_740179_740998_+	COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	NA|401aa|up_3|NC_019695.1_740964_742167_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|343aa|up_2|NC_019695.1_742201_743230_-	COG1335, PncA, Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|203aa|up_1|NC_019695.1_743639_744248_-	pfam03350, UPF0114, Uncharacterized protein family, UPF0114	NA|430aa|up_0|NC_019695.1_744943_746233_-	PRK07424, PRK07424, bifunctional sterol desaturase/short chain dehydrogenase; Validated	NA|297aa|down_0|NC_019695.1_746488_747379_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|362aa|down_1|NC_019695.1_747660_748746_+	TIGR01151, Photosystem_QB_protein, photosystem II, DI subunit (also called Q(B))	NA|98aa|down_2|NC_019695.1_748742_749036_+	pfam11691, DUF3288, Protein of unknown function (DUF3288)	NA|439aa|down_3|NC_019695.1_749048_750365_-	PLN03094, PLN03094, Substrate binding subunit of ER-derived-lipid transporter; Provisional	NA|261aa|down_4|NC_019695.1_750411_751194_-	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents	NA|179aa|down_5|NC_019695.1_751493_752030_-	NA	NA|505aa|down_6|NC_019695.1_752723_754238_+	TIGR02730, Carotenoid_isomerase, carotene isomerase	NA|513aa|down_7|NC_019695.1_754495_756034_+	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]	NA|188aa|down_8|NC_019695.1_756211_756775_+	cd06151, YjgF_YER057c_UK114_like_3, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|212aa|down_9|NC_019695.1_756925_757561_+	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	4	830015-830103	3	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	CATTTGAAGTTAGCGATTTCGATCCCC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|289aa|up_9|NC_019695.1_816203_817070_-,NA|69aa|down_8|NC_019695.1_839997_840204_-,NA|75aa|down_9|NC_019695.1_840361_840586_-	NA|289aa|up_9|NC_019695.1_816203_817070_-	NA	NA|372aa|up_8|NC_019695.1_817156_818272_-	pfam04577, DUF563, Protein of unknown function (DUF563)	NA|325aa|up_7|NC_019695.1_818411_819386_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|552aa|up_6|NC_019695.1_819522_821178_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|345aa|up_5|NC_019695.1_821434_822469_-	cd08946, SDR_e, extended (e) SDRs	NA|421aa|up_4|NC_019695.1_822511_823774_-	pfam04577, DUF563, Protein of unknown function (DUF563)	NA|424aa|up_3|NC_019695.1_825433_826705_-	pfam04577, DUF563, Protein of unknown function (DUF563)	NA|413aa|up_2|NC_019695.1_826966_828205_-	pfam04577, DUF563, Protein of unknown function (DUF563)	NA|275aa|up_1|NC_019695.1_828347_829172_-	pfam14099, Polysacc_lyase, Polysaccharide lyase	NA|258aa|up_0|NC_019695.1_829182_829956_-	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose	NA|270aa|down_0|NC_019695.1_830849_831659_+	pfam14099, Polysacc_lyase, Polysaccharide lyase	NA|164aa|down_1|NC_019695.1_831669_832161_-	COG5017, COG5017, Uncharacterized conserved protein [Function unknown]	NA|150aa|down_2|NC_019695.1_832191_832641_-	pfam08660, Alg14, Oligosaccharide biosynthesis protein Alg14 like	NA|406aa|down_3|NC_019695.1_832774_833992_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|332aa|down_4|NC_019695.1_834003_834999_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|403aa|down_5|NC_019695.1_835034_836243_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|453aa|down_6|NC_019695.1_836227_837586_-	pfam04932, Wzy_C, O-Antigen ligase	NA|690aa|down_7|NC_019695.1_837600_839670_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|69aa|down_8|NC_019695.1_839997_840204_-	NA	NA|75aa|down_9|NC_019695.1_840361_840586_-	NA
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	5	877779-877900	4	CRISPRCasFinder	no	cas14k	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Unclear	GTAGGGGCGGGTTTATCAGACACGCCTGGGGACAAACAAACAAT	44	0	0	NA	NA	NA	1	1	TypeV	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|288aa|up_7|NC_019695.1_865813_866677_+,NA|151aa|up_5|NC_019695.1_869743_870196_+,NA|95aa|up_4|NC_019695.1_870245_870530_-,NA|154aa|down_0|NC_019695.1_878286_878748_-,NA|76aa|down_5|NC_019695.1_883140_883368_-	NA|418aa|up_9|NC_019695.1_863515_864769_-	PRK06185, PRK06185, FAD-dependent oxidoreductase	NA|210aa|up_8|NC_019695.1_864889_865519_-	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region	NA|288aa|up_7|NC_019695.1_865813_866677_+	NA	NA|915aa|up_6|NC_019695.1_866860_869605_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|151aa|up_5|NC_019695.1_869743_870196_+	NA	NA|95aa|up_4|NC_019695.1_870245_870530_-	NA	NA|687aa|up_3|NC_019695.1_870659_872720_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|226aa|up_2|NC_019695.1_873121_873799_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|180aa|up_1|NC_019695.1_873808_874348_+	pfam11322, DUF3124, Protein of unknown function (DUF3124)	NA|521aa|up_0|NC_019695.1_874405_875968_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|154aa|down_0|NC_019695.1_878286_878748_-	NA	NA|169aa|down_1|NC_019695.1_879044_879551_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|233aa|down_2|NC_019695.1_879613_880312_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|117aa|down_3|NC_019695.1_880675_881026_+	pfam12840, HTH_20, Helix-turn-helix domain	NA|634aa|down_4|NC_019695.1_881080_882982_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|76aa|down_5|NC_019695.1_883140_883368_-	NA	NA|82aa|down_6|NC_019695.1_883513_883759_-	CHL00065, psaC, photosystem I subunit VII	NA|410aa|down_7|NC_019695.1_885260_886490_+	cd08199, EEVS, 2-epi-5-epi-valiolone synthase (EEVS)	NA|279aa|down_8|NC_019695.1_886493_887330_+	pfam01596, Methyltransf_3, O-methyltransferase	NA|482aa|down_9|NC_019695.1_887353_888799_+	PRK06849, PRK06849, hypothetical protein; Provisional
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	6	1426777-1426856	5	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	CAAAAGTCAAAATCGCATGACACGA	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA,NA	NA|380aa|up_9|NC_019695.1_1416054_1417194_-	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|330aa|up_8|NC_019695.1_1417341_1418331_-	cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|358aa|up_7|NC_019695.1_1418930_1420004_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|282aa|up_6|NC_019695.1_1420098_1420944_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|432aa|up_5|NC_019695.1_1420943_1422239_+	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|501aa|up_4|NC_019695.1_1422309_1423812_+	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins	NA|384aa|up_3|NC_019695.1_1423828_1424980_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|128aa|up_2|NC_019695.1_1425063_1425447_+	pfam14251, DUF4346, Domain of unknown function (DUF4346)	NA|240aa|up_1|NC_019695.1_1425518_1426238_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|up_0|NC_019695.1_1426316_1426679_-	pfam14105, DUF4278, Domain of unknown function (DUF4278)	NA|288aa|down_0|NC_019695.1_1427113_1427977_-	TIGR01369, Carbamoyl-phosphate_synthase_large_chain, carbamoyl-phosphate synthase, large subunit	NA|1088aa|down_1|NC_019695.1_1428210_1431474_-	pfam00873, ACR_tran, AcrB/AcrD/AcrF family	NA|442aa|down_2|NC_019695.1_1431566_1432892_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|683aa|down_3|NC_019695.1_1433419_1435468_+	PRK13410, PRK13410, molecular chaperone DnaK; Provisional	NA|330aa|down_4|NC_019695.1_1435584_1436574_+	PRK14277, PRK14277, chaperone protein DnaJ; Provisional	NA|97aa|down_5|NC_019695.1_1436589_1436880_+	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	NA|395aa|down_6|NC_019695.1_1437005_1438190_+	NF033206, ScyE_fam, ScyD/ScyE family protein	NA|206aa|down_7|NC_019695.1_1438186_1438804_+	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown]	NA|159aa|down_8|NC_019695.1_1438824_1439301_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|176aa|down_9|NC_019695.1_1439325_1439853_+	pfam10726, DUF2518, Protein of function (DUF2518)
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	7	1833290-1833402	6	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	AAGGGGGACAAGGGGGACAAGGGGGA	26	2	1084	1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-1833334|1833316-18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5283720-5283738|NC_019695.1_5283738-5283756|NC_019695.1_5283774-5283792|NC_019695.1_5304234-5304252|NC_019695.1_5496096-5496114|NC_019695.1_5496105-5496123|NC_019695.1_5496114-5496132|NC_019695.1_5496123-5496141|NC_019695.1_5504430-5504448|NC_019695.1_5504439-5504457|NC_019695.1_5514955-5514973|NC_019695.1_5514964-5514982|NC_019695.1_5514973-5514991|NC_019695.1_5514982-5515000|NC_019695.1_5653759-5653777|NC_019695.1_5653777-5653795|NC_019695.1_5653786-5653804|NC_019695.1_5653822-5653840|NC_019695.1_5653840-5653858|NC_019695.1_5653849-5653867|NC_019695.1_5653858-5653876|NC_019695.1_5653876-5653894|NC_019695.1_5653885-5653903|NC_019695.1_5653894-5653912|NC_019695.1_5780569-5780587|NC_019695.1_5827513-5827531|NC_019695.1_5865074-5865092|NC_019695.1_5865083-5865101|NC_019695.1_5909477-5909495|NC_019695.1_5984424-5984442|NC_019695.1_5984433-5984451|NC_019695.1_5985258-5985276|NC_019695.1_5985267-5985285|NC_019695.1_5985294-5985312|NC_019695.1_5985303-5985321|NC_019695.1_5985312-5985330|NC_019695.1_5997308-5997326|NC_019695.1_5997317-5997335|NC_019695.1_5999212-5999230|NC_019695.1_6015909-6015927|NC_019695.1_6046918-6046936|NC_019695.1_6046927-6046945|NC_019695.1_6098548-6098566|NC_019695.1_6098575-6098593|NC_019695.1_6125982-6126000|NC_019695.1_6126000-6126018|NC_019695.1_6247219-6247237|NC_019695.1_6247228-6247246|NC_019695.1_6247237-6247255|NC_019695.1_6247246-6247264|NC_019695.1_6247255-6247273|NC_019695.1_6247264-6247282|NC_019695.1_125341-125356|NC_019695.1_134447-134432|NC_019695.1_560155-560170|NC_019695.1_585906-585891|NC_019695.1_740036-740051|NC_019695.1_1013142-1013127|NC_019695.1_1093110-1093095|NC_019695.1_1170442-1170427|NC_019695.1_1279416-1279401|NC_019695.1_1502206-1502191|NC_019695.1_1534043-1534058|NC_019695.1_1639212-1639227|NC_019695.1_1752208-1752223|NC_019695.1_1788448-1788463|NC_019695.1_1923526-1923541|NC_019695.1_1970259-1970274|NC_019695.1_2534113-2534098|NC_019695.1_2534155-2534140|NC_019695.1_2534197-2534182|NC_019695.1_2546810-2546795|NC_019695.1_2572717-2572732|NC_019695.1_2719495-2719510|NC_019695.1_3098259-3098244|NC_019695.1_3589390-3589405|NC_019695.1_3650689-3650674|NC_019695.1_3751886-3751871|NC_019695.1_3828457-3828442|NC_019695.1_3952537-3952522|NC_019695.1_4614139-4614124|NC_019695.1_4653232-4653247|NC_019695.1_4668645-4668630|NC_019695.1_4970328-4970313|NC_019695.1_5333163-5333148|NC_019695.1_5340778-5340793|NC_019695.1_5349371-5349356|NC_019695.1_5514135-5514150|NC_019695.1_5732730-5732745|NC_019695.1_5752126-5752141|NC_019695.1_5909514-5909529	NA	2	2	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|128aa|up_5|NC_019695.1_1823005_1823389_+,NA|58aa|down_2|NC_019695.1_1835778_1835952_-,NA|57aa|down_3|NC_019695.1_1836047_1836218_-,NA|99aa|down_6|NC_019695.1_1839381_1839678_-,NA|62aa|down_8|NC_019695.1_1840663_1840849_+	NA|211aa|up_9|NC_019695.1_1819695_1820328_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|102aa|up_8|NC_019695.1_1821013_1821319_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|108aa|up_7|NC_019695.1_1821447_1821771_-	cd15487, bS6_chloro_cyano, 30S ribosomal protein S6 of chloroplasts and cyanobacteria	NA|215aa|up_6|NC_019695.1_1821915_1822560_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|128aa|up_5|NC_019695.1_1823005_1823389_+	NA	NA|447aa|up_4|NC_019695.1_1823442_1824783_-	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]	NA|1329aa|up_3|NC_019695.1_1825239_1829226_+	PRK12493, PRK12493, magnesium chelatase subunit H; Provisional	NA|199aa|up_2|NC_019695.1_1829319_1829916_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|460aa|up_1|NC_019695.1_1830726_1832106_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|368aa|up_0|NC_019695.1_1832182_1833286_+	pfam14249, Tocopherol_cycl, Tocopherol cyclase	NA|185aa|down_0|NC_019695.1_1833712_1834267_-	cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain	NA|502aa|down_1|NC_019695.1_1834263_1835769_-	cd00351, TS_Pyrimidine_HMase, Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides	NA|58aa|down_2|NC_019695.1_1835778_1835952_-	NA	NA|57aa|down_3|NC_019695.1_1836047_1836218_-	NA	NA|339aa|down_4|NC_019695.1_1836566_1837583_+	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|553aa|down_5|NC_019695.1_1837694_1839353_+	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|99aa|down_6|NC_019695.1_1839381_1839678_-	NA	NA|219aa|down_7|NC_019695.1_1839782_1840439_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|62aa|down_8|NC_019695.1_1840663_1840849_+	NA	NA|192aa|down_9|NC_019695.1_1840977_1841553_-	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	8	1981951-1982046	7	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	GTGGCTAGTGGCTGGAATCTTTTCTAG	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|86aa|up_9|NC_019695.1_1972494_1972752_-,NA|71aa|up_3|NC_019695.1_1978192_1978405_-,NA|121aa|down_3|NC_019695.1_1985833_1986196_-,NA|125aa|down_8|NC_019695.1_1990048_1990423_+	NA|86aa|up_9|NC_019695.1_1972494_1972752_-	NA	NA|483aa|up_8|NC_019695.1_1972744_1974193_+	CHL00060, atpB, ATP synthase CF1 beta subunit	NA|140aa|up_7|NC_019695.1_1974316_1974736_+	CHL00063, atpE, ATP synthase CF1 epsilon subunit	NA|579aa|up_6|NC_019695.1_1974816_1976553_-	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|113aa|up_5|NC_019695.1_1976701_1977040_-	PRK02724, PRK02724, 30S ribosomal protein PSRP-3	NA|265aa|up_4|NC_019695.1_1977268_1978063_+	TIGR01548, Imidazoleglycerol-phosphate_dehydratase, haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548	NA|71aa|up_3|NC_019695.1_1978192_1978405_-	NA	NA|427aa|up_2|NC_019695.1_1978458_1979739_-	COG1819, COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	NA|324aa|up_1|NC_019695.1_1980035_1981007_-	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|113aa|up_0|NC_019695.1_1981492_1981831_-	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain	NA|395aa|down_0|NC_019695.1_1982067_1983252_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|390aa|down_1|NC_019695.1_1983311_1984481_-	pfam03022, MRJP, Major royal jelly protein	NA|390aa|down_2|NC_019695.1_1984563_1985733_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|121aa|down_3|NC_019695.1_1985833_1986196_-	NA	NA|390aa|down_4|NC_019695.1_1986264_1987434_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|227aa|down_5|NC_019695.1_1987488_1988169_-	COG5637, COG5637, Predicted integral membrane protein [Function unknown]	NA|365aa|down_6|NC_019695.1_1988266_1989361_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|136aa|down_7|NC_019695.1_1989413_1989821_-	pfam10025, DUF2267, Uncharacterized conserved protein (DUF2267)	NA|125aa|down_8|NC_019695.1_1990048_1990423_+	NA	NA|200aa|down_9|NC_019695.1_1990560_1991160_-	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	9	2325318-2325416	8	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	TGAGACTTGGGGCTAAGCCCGCCC	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|304aa|up_8|NC_019695.1_2314751_2315663_-,NA|118aa|up_6|NC_019695.1_2316604_2316958_-,NA|99aa|up_3|NC_019695.1_2319684_2319981_-,NA|69aa|up_1|NC_019695.1_2322707_2322914_+,NA|103aa|down_0|NC_019695.1_2325435_2325744_-	NA|353aa|up_9|NC_019695.1_2313614_2314673_+	PRK13396, PRK13396, 3-deoxy-7-phosphoheptulonate synthase; Provisional	NA|304aa|up_8|NC_019695.1_2314751_2315663_-	NA	NA|230aa|up_7|NC_019695.1_2315848_2316538_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|118aa|up_6|NC_019695.1_2316604_2316958_-	NA	NA|314aa|up_5|NC_019695.1_2317339_2318281_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|308aa|up_4|NC_019695.1_2318654_2319578_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|99aa|up_3|NC_019695.1_2319684_2319981_-	NA	NA|829aa|up_2|NC_019695.1_2320038_2322525_-	CHL00095, clpC, Clp protease ATP binding subunit	NA|69aa|up_1|NC_019695.1_2322707_2322914_+	NA	NA|774aa|up_0|NC_019695.1_2322888_2325210_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|103aa|down_0|NC_019695.1_2325435_2325744_-	NA	NA|314aa|down_1|NC_019695.1_2326003_2326945_-	PRK07109, PRK07109, short chain dehydrogenase; Provisional	NA|242aa|down_2|NC_019695.1_2327531_2328257_+	pfam10670, DUF4198, Domain of unknown function (DUF4198)	NA|329aa|down_3|NC_019695.1_2328453_2329440_+	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)	NA|637aa|down_4|NC_019695.1_2329790_2331701_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|216aa|down_5|NC_019695.1_2331877_2332525_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|172aa|down_6|NC_019695.1_2332574_2333090_-	pfam00072, Response_reg, Response regulator receiver domain	NA|163aa|down_7|NC_019695.1_2333386_2333875_+	pfam18306, LDcluster4, SLOG cluster4 family	NA|686aa|down_8|NC_019695.1_2333921_2335979_-	COG0557, VacB, Exoribonuclease R [Transcription]	NA|72aa|down_9|NC_019695.1_2336182_2336398_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	10	2620429-2620550	9	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	TGAATTGGTAAGGATTCTAGCTAAACCCGCCCCTACGAATT	41	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|93aa|up_5|NC_019695.1_2615509_2615788_+,NA|57aa|up_0|NC_019695.1_2619992_2620163_+,NA|57aa|down_5|NC_019695.1_2625709_2625880_-	NA|86aa|up_9|NC_019695.1_2613610_2613868_+	pfam12095, CRR7, Protein CHLORORESPIRATORY REDUCTION 7	NA|207aa|up_8|NC_019695.1_2613875_2614496_+	cd00081, Hint, Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e	NA|192aa|up_7|NC_019695.1_2614525_2615101_+	smart00978, Tim44, Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane	NA|65aa|up_6|NC_019695.1_2615157_2615352_-	pfam18506, RelB_N, RelB Antitoxin alpha helical domain	NA|93aa|up_5|NC_019695.1_2615509_2615788_+	NA	NA|138aa|up_4|NC_019695.1_2615904_2616318_-	COG2402, COG2402, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|81aa|up_3|NC_019695.1_2616314_2616557_-	pfam01954, DUF104, Protein of unknown function DUF104	NA|871aa|up_2|NC_019695.1_2616621_2619234_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|108aa|up_1|NC_019695.1_2619516_2619840_+	TIGR02008, Ferredoxin_root_R-B1, ferredoxin [2Fe-2S]	NA|57aa|up_0|NC_019695.1_2619992_2620163_+	NA	NA|372aa|down_0|NC_019695.1_2620582_2621698_+	pfam11805, DUF3326, Protein of unknown function (DUF3326)	NA|196aa|down_1|NC_019695.1_2621738_2622326_+	pfam02517, Abi, CAAX protease self-immunity	NA|218aa|down_2|NC_019695.1_2622464_2623118_-	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|282aa|down_3|NC_019695.1_2623123_2623969_-	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose	NA|412aa|down_4|NC_019695.1_2624080_2625316_-	pfam08484, Methyltransf_14, C-methyltransferase C-terminal domain	NA|57aa|down_5|NC_019695.1_2625709_2625880_-	NA	NA|847aa|down_6|NC_019695.1_2625948_2628489_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|592aa|down_7|NC_019695.1_2628622_2630398_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|392aa|down_8|NC_019695.1_2630400_2631576_+	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	NA|400aa|down_9|NC_019695.1_2631667_2632867_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	11	2632908-2633032	10	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	CGACTCCCACTCTCCCACTCCTGTACGGGCGGGTTT	36	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|57aa|up_4|NC_019695.1_2625709_2625880_-,NA|149aa|down_5|NC_019695.1_2639576_2640023_+	NA|372aa|up_9|NC_019695.1_2620582_2621698_+	pfam11805, DUF3326, Protein of unknown function (DUF3326)	NA|196aa|up_8|NC_019695.1_2621738_2622326_+	pfam02517, Abi, CAAX protease self-immunity	NA|218aa|up_7|NC_019695.1_2622464_2623118_-	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|282aa|up_6|NC_019695.1_2623123_2623969_-	cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose	NA|412aa|up_5|NC_019695.1_2624080_2625316_-	pfam08484, Methyltransf_14, C-methyltransferase C-terminal domain	NA|57aa|up_4|NC_019695.1_2625709_2625880_-	NA	NA|847aa|up_3|NC_019695.1_2625948_2628489_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|592aa|up_2|NC_019695.1_2628622_2630398_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|392aa|up_1|NC_019695.1_2630400_2631576_+	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	NA|400aa|up_0|NC_019695.1_2631667_2632867_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|415aa|down_0|NC_019695.1_2634378_2635623_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|395aa|down_1|NC_019695.1_2635687_2636872_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|312aa|down_2|NC_019695.1_2636974_2637910_-	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family	NA|150aa|down_3|NC_019695.1_2638149_2638599_-	COG1246, ArgA, N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]	NA|194aa|down_4|NC_019695.1_2638635_2639217_-	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|149aa|down_5|NC_019695.1_2639576_2640023_+	NA	NA|236aa|down_6|NC_019695.1_2640515_2641223_+	cd14965, 7tm_Opsins_type1, type 1 opsins, member of the seven-transmembrane GPCR superfamily	NA|295aa|down_7|NC_019695.1_2641253_2642138_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|227aa|down_8|NC_019695.1_2642363_2643044_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|269aa|down_9|NC_019695.1_2643139_2643946_-	pfam03808, Glyco_tran_WecB, Glycosyl transferase WecB/TagA/CpsF family
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	12	2666373-2666505	11	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	GTACAAAAGTCAAACATTCGTAGGGGCGGGTTTGTTTGCAAATGTTACATG	51	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA,NA|106aa|down_9|NC_019695.1_2680340_2680658_-	NA|267aa|up_9|NC_019695.1_2654140_2654941_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|599aa|up_8|NC_019695.1_2654918_2656715_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|350aa|up_7|NC_019695.1_2656602_2657652_+	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands	NA|131aa|up_6|NC_019695.1_2657673_2658066_-	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger	NA|305aa|up_5|NC_019695.1_2658069_2658984_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|395aa|up_4|NC_019695.1_2658976_2660161_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|365aa|up_3|NC_019695.1_2660271_2661366_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|464aa|up_2|NC_019695.1_2661454_2662846_+	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|329aa|up_1|NC_019695.1_2662895_2663882_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|415aa|up_0|NC_019695.1_2663976_2665221_+	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|372aa|down_0|NC_019695.1_2666569_2667685_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|404aa|down_1|NC_019695.1_2668024_2669236_+	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10	NA|260aa|down_2|NC_019695.1_2669495_2670275_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|378aa|down_3|NC_019695.1_2670445_2671579_+	PRK07413, PRK07413, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|455aa|down_4|NC_019695.1_2672619_2673984_+	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|103aa|down_5|NC_019695.1_2674659_2674968_+	pfam14105, DUF4278, Domain of unknown function (DUF4278)	NA|446aa|down_6|NC_019695.1_2675055_2676393_+	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235)	NA|700aa|down_7|NC_019695.1_2676627_2678727_-	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|507aa|down_8|NC_019695.1_2678813_2680334_-	cd07406, MPP_CG11883_N, Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain	NA|106aa|down_9|NC_019695.1_2680340_2680658_-	NA
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	13	3207496-3207595	12	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	TAGGGGCAGGTTTACCGAGTTATT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|174aa|up_6|NC_019695.1_3198689_3199211_+,NA|163aa|up_1|NC_019695.1_3204380_3204869_+,NA|52aa|down_0|NC_019695.1_3207966_3208122_+,NA|52aa|down_1|NC_019695.1_3208151_3208307_+,NA|162aa|down_2|NC_019695.1_3208483_3208969_+,NA|150aa|down_3|NC_019695.1_3209011_3209461_+,NA|64aa|down_8|NC_019695.1_3216657_3216849_+	NA|86aa|up_9|NC_019695.1_3195320_3195578_-	pfam17275, DUF5340, Family of unknown function (DUF5340)	NA|294aa|up_8|NC_019695.1_3195901_3196783_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|477aa|up_7|NC_019695.1_3196932_3198363_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|174aa|up_6|NC_019695.1_3198689_3199211_+	NA	NA|167aa|up_5|NC_019695.1_3199219_3199720_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|881aa|up_4|NC_019695.1_3199814_3202457_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|157aa|up_3|NC_019695.1_3202543_3203014_+	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|389aa|up_2|NC_019695.1_3203028_3204195_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|163aa|up_1|NC_019695.1_3204380_3204869_+	NA	NA|794aa|up_0|NC_019695.1_3205003_3207385_-	sd00006, TPR, Tetratricopeptide repeat	NA|52aa|down_0|NC_019695.1_3207966_3208122_+	NA	NA|52aa|down_1|NC_019695.1_3208151_3208307_+	NA	NA|162aa|down_2|NC_019695.1_3208483_3208969_+	NA	NA|150aa|down_3|NC_019695.1_3209011_3209461_+	NA	NA|585aa|down_4|NC_019695.1_3209471_3211226_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|1230aa|down_5|NC_019695.1_3211302_3214992_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|119aa|down_6|NC_019695.1_3215554_3215911_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|211aa|down_7|NC_019695.1_3216017_3216650_-	sd00006, TPR, Tetratricopeptide repeat	NA|64aa|down_8|NC_019695.1_3216657_3216849_+	NA	NA|112aa|down_9|NC_019695.1_3216865_3217201_-	PRK13697, PRK13697, cytochrome c6; Provisional
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	14	3355660-3356062	1,13,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5,WYL	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Unclear	NTCAATCCCTAATAGGGNGNNAATTNAATTTCAAC,GTTTCAATCCCTAATAGGGCGTTAATTAAATTTCAAC,GTTTCAATCCCTAATAGGGCGTTAATTGAATTTCAAC	35,37,37	0	0	NA	NA	NA:I-D,II-B:I-D,II-B	5,4,2	5	Unclear	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|159aa|up_7|NC_019695.1_3350636_3351113_+,NA|187aa|up_6|NC_019695.1_3351244_3351805_-,NA|50aa|up_5|NC_019695.1_3351908_3352058_-,NA|48aa|up_3|NC_019695.1_3352778_3352922_+,cas5|276aa|down_7|NC_019695.1_3366644_3367472_-,cas7|292aa|down_8|NC_019695.1_3367475_3368351_-,cas8b5|827aa|down_9|NC_019695.1_3368353_3370834_-	NA|97aa|up_9|NC_019695.1_3349685_3349976_+	pfam11347, DUF3148, Protein of unknown function (DUF3148)	NA|186aa|up_8|NC_019695.1_3350011_3350569_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|159aa|up_7|NC_019695.1_3350636_3351113_+	NA	NA|187aa|up_6|NC_019695.1_3351244_3351805_-	NA	NA|50aa|up_5|NC_019695.1_3351908_3352058_-	NA	NA|220aa|up_4|NC_019695.1_3352111_3352771_-	cd14262, VirB5_like, VirB5 protein family	NA|48aa|up_3|NC_019695.1_3352778_3352922_+	NA	NA|228aa|up_2|NC_019695.1_3352928_3353612_-	TIGR04153, hypothetical_protein_L8106_04486, cyanosortase A-associated protein	NA|292aa|up_1|NC_019695.1_3353608_3354484_-	TIGR03763, conserved_hypothetical_protein, cyanoexosortase A	NA|377aa|up_0|NC_019695.1_3354509_3355640_-	COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]	NA|90aa|down_0|NC_019695.1_3356128_3356398_-	TIGR02116, Hypothetical_protein_Rv3358/MT3466/Mb3393	NA|81aa|down_1|NC_019695.1_3356405_3356648_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	cas2|96aa|down_2|NC_019695.1_3361160_3361448_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|335aa|down_3|NC_019695.1_3361469_3362474_-	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO	cas4|198aa|down_4|NC_019695.1_3362516_3363110_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas6|288aa|down_5|NC_019695.1_3363096_3363960_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas3|894aa|down_6|NC_019695.1_3363970_3366652_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|276aa|down_7|NC_019695.1_3366644_3367472_-	NA	cas7|292aa|down_8|NC_019695.1_3367475_3368351_-	NA	cas8b5|827aa|down_9|NC_019695.1_3368353_3370834_-	NA
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	15	3356802-3360948	14,2,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,cas4,cas6,cas3,cas5,cas7,cas8b5,WYL	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Unclear	GTTTCAATCCCTAATAGGGCGTTAATTAAATTTCAAC,GTTTCAATCCCTAATAGGGCGTTAATTAAATTTCAAC,GTTTCAATCCCTAATAGGGCGTTAATTAAATTTCAAC,GTTTCAATCCCTAATAGGGCGTTAATTAAATTTCAAC	37,37,37,37	0	0	NA	NA	I-D,II-B:I-D,II-B:I-D,II-B:I-D,II-B	56,56,55,55	56	Unclear	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|159aa|up_9|NC_019695.1_3350636_3351113_+,NA|187aa|up_8|NC_019695.1_3351244_3351805_-,NA|50aa|up_7|NC_019695.1_3351908_3352058_-,NA|48aa|up_5|NC_019695.1_3352778_3352922_+,cas5|276aa|down_5|NC_019695.1_3366644_3367472_-,cas7|292aa|down_6|NC_019695.1_3367475_3368351_-,cas8b5|827aa|down_7|NC_019695.1_3368353_3370834_-	NA|159aa|up_9|NC_019695.1_3350636_3351113_+	NA	NA|187aa|up_8|NC_019695.1_3351244_3351805_-	NA	NA|50aa|up_7|NC_019695.1_3351908_3352058_-	NA	NA|220aa|up_6|NC_019695.1_3352111_3352771_-	cd14262, VirB5_like, VirB5 protein family	NA|48aa|up_5|NC_019695.1_3352778_3352922_+	NA	NA|228aa|up_4|NC_019695.1_3352928_3353612_-	TIGR04153, hypothetical_protein_L8106_04486, cyanosortase A-associated protein	NA|292aa|up_3|NC_019695.1_3353608_3354484_-	TIGR03763, conserved_hypothetical_protein, cyanoexosortase A	NA|377aa|up_2|NC_019695.1_3354509_3355640_-	COG1453, COG1453, Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]	NA|90aa|up_1|NC_019695.1_3356128_3356398_-	TIGR02116, Hypothetical_protein_Rv3358/MT3466/Mb3393	NA|81aa|up_0|NC_019695.1_3356405_3356648_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	cas2|96aa|down_0|NC_019695.1_3361160_3361448_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|335aa|down_1|NC_019695.1_3361469_3362474_-	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO	cas4|198aa|down_2|NC_019695.1_3362516_3363110_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas6|288aa|down_3|NC_019695.1_3363096_3363960_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas3|894aa|down_4|NC_019695.1_3363970_3366652_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|276aa|down_5|NC_019695.1_3366644_3367472_-	NA	cas7|292aa|down_6|NC_019695.1_3367475_3368351_-	NA	cas8b5|827aa|down_7|NC_019695.1_3368353_3370834_-	NA	WYL|288aa|down_8|NC_019695.1_3370980_3371844_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|146aa|down_9|NC_019695.1_3371881_3372319_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	16	3853775-3853882	15	CRISPRCasFinder	no	csa3	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Type I-A	CCCTTGTCCCCCTTGTCCCCCTTGTCCCCCTTGTCCCC	38	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|144aa|up_4|NC_019695.1_3845548_3845980_-,NA|52aa|down_5|NC_019695.1_3866251_3866407_-	NA|543aa|up_9|NC_019695.1_3840776_3842405_+	COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms]	NA|215aa|up_8|NC_019695.1_3842607_3843252_-	cd04303, HAD_PGPase, phosphoglycolate phosphatase, similar to Synechococcus elongates phosphoglycolate phosphatase PGP/CbbZ	NA|320aa|up_7|NC_019695.1_3843251_3844211_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|174aa|up_6|NC_019695.1_3844398_3844920_+	pfam09150, Carot_N, Orange carotenoid protein, N-terminal	NA|138aa|up_5|NC_019695.1_3845091_3845505_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|144aa|up_4|NC_019695.1_3845548_3845980_-	NA	NA|249aa|up_3|NC_019695.1_3846194_3846941_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|591aa|up_2|NC_019695.1_3847610_3849383_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|144aa|up_1|NC_019695.1_3849549_3849981_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|1193aa|up_0|NC_019695.1_3850059_3853638_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|567aa|down_0|NC_019695.1_3853941_3855642_+	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB	NA|626aa|down_1|NC_019695.1_3855652_3857530_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|443aa|down_2|NC_019695.1_3858080_3859409_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|1568aa|down_3|NC_019695.1_3859657_3864361_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|471aa|down_4|NC_019695.1_3864483_3865896_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|52aa|down_5|NC_019695.1_3866251_3866407_-	NA	NA|216aa|down_6|NC_019695.1_3866554_3867202_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|398aa|down_7|NC_019695.1_3867237_3868431_-	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional	NA|122aa|down_8|NC_019695.1_3868886_3869252_+	pfam00072, Response_reg, Response regulator receiver domain	NA|352aa|down_9|NC_019695.1_3869419_3870475_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	17	3859486-3859592	16	CRISPRCasFinder	no	csa3	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Type I-A	AAGGGGGGCTAGGGGGGATCGAGATCTTCAACTTCAAAC	39	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|144aa|up_7|NC_019695.1_3845548_3845980_-,NA|52aa|down_2|NC_019695.1_3866251_3866407_-	NA|174aa|up_9|NC_019695.1_3844398_3844920_+	pfam09150, Carot_N, Orange carotenoid protein, N-terminal	NA|138aa|up_8|NC_019695.1_3845091_3845505_+	pfam12680, SnoaL_2, SnoaL-like domain	NA|144aa|up_7|NC_019695.1_3845548_3845980_-	NA	NA|249aa|up_6|NC_019695.1_3846194_3846941_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|591aa|up_5|NC_019695.1_3847610_3849383_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|144aa|up_4|NC_019695.1_3849549_3849981_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|1193aa|up_3|NC_019695.1_3850059_3853638_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|567aa|up_2|NC_019695.1_3853941_3855642_+	cd16433, CheB, Chemotaxis response regulator protein-glutamate methylesterase, CheB	NA|626aa|up_1|NC_019695.1_3855652_3857530_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|443aa|up_0|NC_019695.1_3858080_3859409_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|1568aa|down_0|NC_019695.1_3859657_3864361_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|471aa|down_1|NC_019695.1_3864483_3865896_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|52aa|down_2|NC_019695.1_3866251_3866407_-	NA	NA|216aa|down_3|NC_019695.1_3866554_3867202_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|398aa|down_4|NC_019695.1_3867237_3868431_-	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional	NA|122aa|down_5|NC_019695.1_3868886_3869252_+	pfam00072, Response_reg, Response regulator receiver domain	NA|352aa|down_6|NC_019695.1_3869419_3870475_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	csa3|290aa|down_7|NC_019695.1_3870557_3871427_+	CHL00095, clpC, Clp protease ATP binding subunit	NA|947aa|down_8|NC_019695.1_3871524_3874365_-	COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms]	NA|226aa|down_9|NC_019695.1_3874718_3875396_-	TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	18	4447210-4447302	17	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	CTGATAATTCTACAAGCACTTCTA	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|187aa|up_8|NC_019695.1_4433022_4433583_-,NA|1583aa|up_7|NC_019695.1_4433619_4438368_+,NA|250aa|up_6|NC_019695.1_4438911_4439661_+,NA|276aa|up_5|NC_019695.1_4439677_4440505_+,NA|306aa|up_4|NC_019695.1_4440497_4441415_+,NA|712aa|up_3|NC_019695.1_4441419_4443555_+,NA|360aa|up_2|NC_019695.1_4443586_4444666_+,NA|266aa|up_0|NC_019695.1_4445895_4446693_+,NA|128aa|down_0|NC_019695.1_4447868_4448252_+,NA|199aa|down_6|NC_019695.1_4454796_4455393_-,NA|95aa|down_7|NC_019695.1_4455463_4455748_-,NA|194aa|down_8|NC_019695.1_4455750_4456332_-	NA|307aa|up_9|NC_019695.1_4431871_4432792_+	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus	NA|187aa|up_8|NC_019695.1_4433022_4433583_-	NA	NA|1583aa|up_7|NC_019695.1_4433619_4438368_+	NA	NA|250aa|up_6|NC_019695.1_4438911_4439661_+	NA	NA|276aa|up_5|NC_019695.1_4439677_4440505_+	NA	NA|306aa|up_4|NC_019695.1_4440497_4441415_+	NA	NA|712aa|up_3|NC_019695.1_4441419_4443555_+	NA	NA|360aa|up_2|NC_019695.1_4443586_4444666_+	NA	NA|428aa|up_1|NC_019695.1_4444607_4445891_+	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|266aa|up_0|NC_019695.1_4445895_4446693_+	NA	NA|128aa|down_0|NC_019695.1_4447868_4448252_+	NA	NA|461aa|down_1|NC_019695.1_4448276_4449659_+	cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|194aa|down_2|NC_019695.1_4449709_4450291_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|589aa|down_3|NC_019695.1_4450334_4452101_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|693aa|down_4|NC_019695.1_4452102_4454181_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|209aa|down_5|NC_019695.1_4454273_4454900_-	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|199aa|down_6|NC_019695.1_4454796_4455393_-	NA	NA|95aa|down_7|NC_019695.1_4455463_4455748_-	NA	NA|194aa|down_8|NC_019695.1_4455750_4456332_-	NA	NA|125aa|down_9|NC_019695.1_4456386_4456761_-	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	19	5319276-5319390	18	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	ATTTCGGGTGAACCCGCCCCTACAATTTTTGACTTTTG	38	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA,NA	NA|338aa|up_9|NC_019695.1_5308211_5309225_+	PRK07403, PRK07403, type I glyceraldehyde-3-phosphate dehydrogenase	NA|358aa|up_8|NC_019695.1_5309291_5310365_-	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|226aa|up_7|NC_019695.1_5310391_5311069_-	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism]	NA|165aa|up_6|NC_019695.1_5311267_5311762_-	cd17036, T3SC_YbjN-like_1, T110839 is structurally similar to type III secretion system chaperones and YbjN family proteins	NA|352aa|up_5|NC_019695.1_5311921_5312977_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|474aa|up_4|NC_019695.1_5313261_5314683_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|170aa|up_3|NC_019695.1_5315052_5315562_+	cd12126, APC_beta, Allophycocyanin beta subunit of the phycobilisome core	NA|321aa|up_2|NC_019695.1_5315653_5316616_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|268aa|up_1|NC_019695.1_5316876_5317680_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|433aa|up_0|NC_019695.1_5317887_5319186_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|307aa|down_0|NC_019695.1_5319412_5320333_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|274aa|down_1|NC_019695.1_5320335_5321157_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|382aa|down_2|NC_019695.1_5321257_5322403_+	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA|495aa|down_3|NC_019695.1_5322368_5323853_+	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]	NA|361aa|down_4|NC_019695.1_5323967_5325050_+	pfam00487, FA_desaturase, Fatty acid desaturase	NA|256aa|down_5|NC_019695.1_5325102_5325870_-	cd07712, MBLAC2-like_MBL-fold, uncharacterized human metallo-beta-lactamase domain-containing protein 2 and related proteins; MBL-fold metallo hydrolase domain	NA|339aa|down_6|NC_019695.1_5325926_5326943_-	cd13563, PBP2_SsuA_like_6, Putative substrate binding domain of sulfonate binding protein-like, a member of the type 2 periplasmic binding protein fold	NA|276aa|down_7|NC_019695.1_5327035_5327863_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|291aa|down_8|NC_019695.1_5328435_5329308_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|200aa|down_9|NC_019695.1_5329430_5330030_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	20	5471789-5471904	19	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	GGTTTTGACCCAAGATTTACTGCCTCAGTTGTCGAGCTATT	41	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|189aa|up_8|NC_019695.1_5464229_5464796_-,NA|412aa|up_6|NC_019695.1_5466211_5467447_-,NA|58aa|up_5|NC_019695.1_5467917_5468091_+,NA|261aa|down_1|NC_019695.1_5473042_5473825_+,NA|48aa|down_3|NC_019695.1_5475060_5475204_-,NA|139aa|down_6|NC_019695.1_5477668_5478085_+	NA|243aa|up_9|NC_019695.1_5463407_5464136_-	pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain	NA|189aa|up_8|NC_019695.1_5464229_5464796_-	NA	NA|314aa|up_7|NC_019695.1_5465088_5466030_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|412aa|up_6|NC_019695.1_5466211_5467447_-	NA	NA|58aa|up_5|NC_019695.1_5467917_5468091_+	NA	NA|71aa|up_4|NC_019695.1_5468249_5468462_+	pfam10716, NdhL, NADH dehydrogenase transmembrane subunit	NA|104aa|up_3|NC_019695.1_5468498_5468810_+	pfam11460, DUF3007, Protein of unknown function (DUF3007)	NA|267aa|up_2|NC_019695.1_5468820_5469621_+	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|221aa|up_1|NC_019695.1_5469688_5470351_+	PRK00698, tmk, thymidylate kinase; Validated	NA|463aa|up_0|NC_019695.1_5470347_5471736_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|317aa|down_0|NC_019695.1_5471945_5472896_+	PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated	NA|261aa|down_1|NC_019695.1_5473042_5473825_+	NA	NA|385aa|down_2|NC_019695.1_5473887_5475042_-	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|48aa|down_3|NC_019695.1_5475060_5475204_-	NA	NA|227aa|down_4|NC_019695.1_5475251_5475932_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|296aa|down_5|NC_019695.1_5476726_5477614_+	PRK03982, PRK03982, heat shock protein HtpX; Provisional	NA|139aa|down_6|NC_019695.1_5477668_5478085_+	NA	NA|178aa|down_7|NC_019695.1_5478432_5478966_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|310aa|down_8|NC_019695.1_5479063_5479993_+	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only]	NA|212aa|down_9|NC_019695.1_5480032_5480668_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	21	5663865-5663958	20	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	TCAGTTGTCAGTTATCAGTCTAGCCAACTACCAA	34	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA,NA|218aa|down_2|NC_019695.1_5666157_5666811_-,NA|129aa|down_3|NC_019695.1_5667100_5667487_-,NA|73aa|down_4|NC_019695.1_5667530_5667749_-,NA|129aa|down_5|NC_019695.1_5667772_5668159_-,NA|116aa|down_6|NC_019695.1_5668244_5668592_-,NA|143aa|down_7|NC_019695.1_5668672_5669101_-,NA|126aa|down_8|NC_019695.1_5669228_5669606_-,NA|117aa|down_9|NC_019695.1_5669886_5670237_-	NA|91aa|up_9|NC_019695.1_5653714_5653987_+	pfam06524, NOA36, NOA36 protein	NA|123aa|up_8|NC_019695.1_5653978_5654347_-	cd07245, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|128aa|up_7|NC_019695.1_5654526_5654910_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|492aa|up_6|NC_019695.1_5655006_5656482_-	PHA02876, PHA02876, ankyrin repeat protein; Provisional	NA|157aa|up_5|NC_019695.1_5656679_5657150_+	pfam13301, DUF4079, Protein of unknown function (DUF4079)	NA|221aa|up_4|NC_019695.1_5657186_5657849_-	pfam09366, DUF1997, Protein of unknown function (DUF1997)	NA|221aa|up_3|NC_019695.1_5658033_5658696_+	PLN00141, PLN00141, Tic62-NAD(P)-related group II protein; Provisional	NA|248aa|up_2|NC_019695.1_5658753_5659497_+	COG4678, COG4678, Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism]	NA|258aa|up_1|NC_019695.1_5659514_5660288_-	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase	NA|897aa|up_0|NC_019695.1_5661133_5663824_-	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase	NA|157aa|down_0|NC_019695.1_5663973_5664444_-	pfam14108, DUF4281, Domain of unknown function (DUF4281)	NA|398aa|down_1|NC_019695.1_5664613_5665807_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|218aa|down_2|NC_019695.1_5666157_5666811_-	NA	NA|129aa|down_3|NC_019695.1_5667100_5667487_-	NA	NA|73aa|down_4|NC_019695.1_5667530_5667749_-	NA	NA|129aa|down_5|NC_019695.1_5667772_5668159_-	NA	NA|116aa|down_6|NC_019695.1_5668244_5668592_-	NA	NA|143aa|down_7|NC_019695.1_5668672_5669101_-	NA	NA|126aa|down_8|NC_019695.1_5669228_5669606_-	NA	NA|117aa|down_9|NC_019695.1_5669886_5670237_-	NA
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	22	5726896-5726974	21	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	CACACAAACTGTAGGGGCGCACACAA	26	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|50aa|up_4|NC_019695.1_5722387_5722537_+,NA|82aa|down_4|NC_019695.1_5732554_5732800_+,NA|71aa|down_9|NC_019695.1_5739079_5739292_-	NA|248aa|up_9|NC_019695.1_5716137_5716881_+	cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|277aa|up_8|NC_019695.1_5717514_5718345_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|142aa|up_7|NC_019695.1_5718355_5718781_-	pfam00875, DNA_photolyase, DNA photolyase	NA|336aa|up_6|NC_019695.1_5718834_5719842_-	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|675aa|up_5|NC_019695.1_5720211_5722236_+	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|50aa|up_4|NC_019695.1_5722387_5722537_+	NA	NA|246aa|up_3|NC_019695.1_5723039_5723777_+	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|270aa|up_2|NC_019695.1_5723800_5724610_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|241aa|up_1|NC_019695.1_5724623_5725346_-	pfam14062, DUF4253, Domain of unknown function (DUF4253)	NA|453aa|up_0|NC_019695.1_5725436_5726795_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|478aa|down_0|NC_019695.1_5727043_5728477_-	TIGR00947, 2A73, putative bicarbonate transporter, IctB family	NA|271aa|down_1|NC_019695.1_5729156_5729969_+	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16	NA|505aa|down_2|NC_019695.1_5730062_5731577_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|249aa|down_3|NC_019695.1_5731809_5732556_-	pfam05419, GUN4, GUN4-like	NA|82aa|down_4|NC_019695.1_5732554_5732800_+	NA	NA|475aa|down_5|NC_019695.1_5732958_5734383_+	PRK07362, PRK07362, NADP-dependent isocitrate dehydrogenase	NA|451aa|down_6|NC_019695.1_5734488_5735841_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|505aa|down_7|NC_019695.1_5735970_5737485_-	TIGR02733, similar_to_to_phytoene_dehydrogenase, C-3',4' desaturase CrtD	NA|474aa|down_8|NC_019695.1_5737655_5739077_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|71aa|down_9|NC_019695.1_5739079_5739292_-	NA
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	23	6303764-6303856	22	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	GAAGTGTCTGCGGCTAGGTAGAA	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA,NA|130aa|down_1|NC_019695.1_6305747_6306137_+,NA|90aa|down_2|NC_019695.1_6308923_6309193_+,NA|131aa|down_3|NC_019695.1_6309478_6309871_-,NA|89aa|down_4|NC_019695.1_6310189_6310456_-,NA|82aa|down_7|NC_019695.1_6312710_6312956_+	NA|308aa|up_9|NC_019695.1_6288723_6289647_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|338aa|up_8|NC_019695.1_6289704_6290718_+	COG2339, prsW, Membrane proteinase, regulator of anti-sigma factor [Posttranslational modification, protein turnover, chaperones]	NA|100aa|up_7|NC_019695.1_6290848_6291148_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|38aa|up_6|NC_019695.1_6291364_6291478_+	PRK04989, psbM, photosystem II reaction center protein M; Provisional	NA|284aa|up_5|NC_019695.1_6291617_6292469_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|604aa|up_4|NC_019695.1_6293171_6294983_+	pfam04966, OprB, Carbohydrate-selective porin, OprB family	NA|146aa|up_3|NC_019695.1_6295232_6295670_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|321aa|up_2|NC_019695.1_6295753_6296716_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|238aa|up_1|NC_019695.1_6296731_6297445_+	pfam00226, DnaJ, DnaJ domain	NA|289aa|up_0|NC_019695.1_6302891_6303758_+	PRK07428, PRK07428, carboxylating nicotinate-nucleotide diphosphorylase	NA|590aa|down_0|NC_019695.1_6303901_6305671_+	PLN02286, PLN02286, arginine-tRNA ligase	NA|130aa|down_1|NC_019695.1_6305747_6306137_+	NA	NA|90aa|down_2|NC_019695.1_6308923_6309193_+	NA	NA|131aa|down_3|NC_019695.1_6309478_6309871_-	NA	NA|89aa|down_4|NC_019695.1_6310189_6310456_-	NA	NA|209aa|down_5|NC_019695.1_6310574_6311201_-	PRK10005, PRK10005, dihydroxyacetone kinase ADP-binding subunit DhaL	NA|356aa|down_6|NC_019695.1_6311306_6312374_-	PRK11468, PRK11468, dihydroxyacetone kinase subunit DhaK; Provisional	NA|82aa|down_7|NC_019695.1_6312710_6312956_+	NA	NA|123aa|down_8|NC_019695.1_6313083_6313452_+	pfam00072, Response_reg, Response regulator receiver domain	NA|172aa|down_9|NC_019695.1_6313508_6314024_-	cd00487, Pep_deformylase, Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes
GCF_000317125.1_ASM31712v1	NC_019695	Chroococcidiopsis thermalis PCC 7203, complete sequence	24	6306139-6306251	23	CRISPRCasFinder	no		RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS	Orphan	TCCCCCCTAACCCCCCTTAGAAAGGGGGGAAT	32	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|130aa|up_0|NC_019695.1_6305747_6306137_+,NA|90aa|down_0|NC_019695.1_6308923_6309193_+,NA|131aa|down_1|NC_019695.1_6309478_6309871_-,NA|89aa|down_2|NC_019695.1_6310189_6310456_-,NA|82aa|down_5|NC_019695.1_6312710_6312956_+	NA|100aa|up_9|NC_019695.1_6290848_6291148_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|38aa|up_8|NC_019695.1_6291364_6291478_+	PRK04989, psbM, photosystem II reaction center protein M; Provisional	NA|284aa|up_7|NC_019695.1_6291617_6292469_-	cd00293, USP_Like, Usp: Universal stress protein family	NA|604aa|up_6|NC_019695.1_6293171_6294983_+	pfam04966, OprB, Carbohydrate-selective porin, OprB family	NA|146aa|up_5|NC_019695.1_6295232_6295670_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|321aa|up_4|NC_019695.1_6295753_6296716_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|238aa|up_3|NC_019695.1_6296731_6297445_+	pfam00226, DnaJ, DnaJ domain	NA|289aa|up_2|NC_019695.1_6302891_6303758_+	PRK07428, PRK07428, carboxylating nicotinate-nucleotide diphosphorylase	NA|590aa|up_1|NC_019695.1_6303901_6305671_+	PLN02286, PLN02286, arginine-tRNA ligase	NA|130aa|up_0|NC_019695.1_6305747_6306137_+	NA	NA|90aa|down_0|NC_019695.1_6308923_6309193_+	NA	NA|131aa|down_1|NC_019695.1_6309478_6309871_-	NA	NA|89aa|down_2|NC_019695.1_6310189_6310456_-	NA	NA|209aa|down_3|NC_019695.1_6310574_6311201_-	PRK10005, PRK10005, dihydroxyacetone kinase ADP-binding subunit DhaL	NA|356aa|down_4|NC_019695.1_6311306_6312374_-	PRK11468, PRK11468, dihydroxyacetone kinase subunit DhaK; Provisional	NA|82aa|down_5|NC_019695.1_6312710_6312956_+	NA	NA|123aa|down_6|NC_019695.1_6313083_6313452_+	pfam00072, Response_reg, Response regulator receiver domain	NA|172aa|down_7|NC_019695.1_6313508_6314024_-	cd00487, Pep_deformylase, Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-terminal formyl group in a growing polypeptide chain following translation initiation during protein synthesis in prokaryotes	NA|473aa|down_8|NC_019695.1_6314256_6315675_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|NA	NA
GCF_000317125.1_ASM31712v1	NC_019699	Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence	1	40004-40090	1	CRISPRCasFinder	no		c2c10_CAS-V-U3,csa3,c2c8_V-U2,cas14j,Cas9_archaeal,cas4,c2c9_V-U4	Orphan	GCCGCCATGCTGCATGTTCTGCAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|164aa|up_5|NC_019699.1_25834_26326_-,NA	NA|464aa|up_9|NC_019699.1_21749_23141_-	TIGR00900, multidrug_transporter, H+ Antiporter protein	NA|88aa|up_8|NC_019699.1_23164_23428_-	cd10148, CsoR-like_DUF156, Transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this domain superfamily was previously known as DUF156	NA|443aa|up_7|NC_019699.1_23688_25017_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|235aa|up_6|NC_019699.1_25003_25708_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|164aa|up_5|NC_019699.1_25834_26326_-	NA	NA|322aa|up_4|NC_019699.1_29889_30855_+	pfam09572, RE_XamI, XamI restriction endonuclease	NA|540aa|up_3|NC_019699.1_30829_32449_+	TIGR02987, m6_adenine_and_m5_cytosine_DNA_methyltransferase, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family	NA|496aa|up_2|NC_019699.1_32451_33939_-	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1042aa|up_1|NC_019699.1_34273_37399_-	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism]	NA|590aa|up_0|NC_019699.1_37440_39210_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|221aa|down_0|NC_019699.1_40955_41618_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|701aa|down_1|NC_019699.1_41815_43918_+	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase	NA|180aa|down_2|NC_019699.1_44574_45114_-	COG4678, COG4678, Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism]	NA|371aa|down_3|NC_019699.1_45633_46746_-	COG2082, CobH, Precorrin isomerase [Coenzyme metabolism]	NA|639aa|down_4|NC_019699.1_46832_48749_+	cd07551, P-type_ATPase_HM_ZosA_PfeT-like, P-type heavy metal-transporting ATPase, similar to Bacillus subtilis ZosA/PfeT which transports copper, and perhaps zinc under oxidative stress, and perhaps ferrous iron	NA|444aa|down_5|NC_019699.1_48864_50196_-	cd13860, CuRO_1_2dMco_1, The first cupredoxin domain of bacteria two domain multicopper oxidase	NA|256aa|down_6|NC_019699.1_50232_51000_-	pfam14342, DUF4396, Domain of unknown function (DUF4396)	NA|448aa|down_7|NC_019699.1_51262_52606_-	PRK06116, PRK06116, glutathione reductase; Validated	NA|171aa|down_8|NC_019699.1_53054_53567_+	PRK09267, PRK09267, flavodoxin FldA; Validated	NA|223aa|down_9|NC_019699.1_53705_54374_-	cd11669, TTHB210-like, Hypothetical protein TTHB210, a sigma(E)-regulated gene product found in Thermus thermophilus, and similar proteins
GCF_000317125.1_ASM31712v1	NC_019699	Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence	2	184447-184551	2	CRISPRCasFinder	no	cas14j	c2c10_CAS-V-U3,csa3,c2c8_V-U2,cas14j,Cas9_archaeal,cas4,c2c9_V-U4	Unclear	CTATTCCCCTGCTATTCCTGGAATAT	26	0	0	NA	NA	NA	1	1	TypeV	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|131aa|up_9|NC_019699.1_178402_178795_-,NA|141aa|up_7|NC_019699.1_179707_180130_+,NA|63aa|up_5|NC_019699.1_181665_181854_-,NA|46aa|up_4|NC_019699.1_182042_182180_-,NA|165aa|up_1|NC_019699.1_183307_183802_-,NA|94aa|up_0|NC_019699.1_183933_184215_+,NA|130aa|down_0|NC_019699.1_185479_185869_+,NA|81aa|down_1|NC_019699.1_186140_186383_+,NA|92aa|down_4|NC_019699.1_188495_188771_+,NA|79aa|down_5|NC_019699.1_189014_189251_+,NA|192aa|down_7|NC_019699.1_191641_192217_-,NA|2180aa|down_8|NC_019699.1_192247_198787_+,NA|218aa|down_9|NC_019699.1_198794_199448_+	NA|131aa|up_9|NC_019699.1_178402_178795_-	NA	NA|209aa|up_8|NC_019699.1_178809_179436_-	COG5340, COG5340, Predicted transcriptional regulator [Transcription]	NA|141aa|up_7|NC_019699.1_179707_180130_+	NA	NA|433aa|up_6|NC_019699.1_180253_181552_-	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|63aa|up_5|NC_019699.1_181665_181854_-	NA	NA|46aa|up_4|NC_019699.1_182042_182180_-	NA	NA|71aa|up_3|NC_019699.1_182439_182652_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|75aa|up_2|NC_019699.1_182648_182873_+	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	NA|165aa|up_1|NC_019699.1_183307_183802_-	NA	NA|94aa|up_0|NC_019699.1_183933_184215_+	NA	NA|130aa|down_0|NC_019699.1_185479_185869_+	NA	NA|81aa|down_1|NC_019699.1_186140_186383_+	NA	NA|258aa|down_2|NC_019699.1_186519_187293_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|381aa|down_3|NC_019699.1_187296_188439_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|92aa|down_4|NC_019699.1_188495_188771_+	NA	NA|79aa|down_5|NC_019699.1_189014_189251_+	NA	NA|483aa|down_6|NC_019699.1_189952_191401_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|192aa|down_7|NC_019699.1_191641_192217_-	NA	NA|2180aa|down_8|NC_019699.1_192247_198787_+	NA	NA|218aa|down_9|NC_019699.1_198794_199448_+	NA
GCF_000317125.1_ASM31712v1	NC_019699	Chroococcidiopsis thermalis PCC 7203 plasmid pCHRO.01, complete sequence	3	210696-210839	3	CRISPRCasFinder	no	Cas9_archaeal	c2c10_CAS-V-U3,csa3,c2c8_V-U2,cas14j,Cas9_archaeal,cas4,c2c9_V-U4	 or Type II-C?, Type II-B,Type II-A	TGCTACGATGCCCGCGTCAAGTTTTTGCTACGATGCCCGCGTCAA	45	0	0	NA	NA	NA	1	1	orTypeII-C?,TypeII-B,TypeII-A	RT,csa3,cas14k,cas14j,cas3,DinG,cas2,cas1,cas4,cas6,cas5,cas7,cas8b5,WYL,2OG_CAS,c2c10_CAS-V-U3,c2c8_V-U2,Cas9_archaeal,c2c9_V-U4	NA|83aa|up_9|NC_019699.1_199520_199769_-,NA|197aa|up_4|NC_019699.1_205139_205730_-,NA|229aa|up_3|NC_019699.1_205743_206430_-,NA|376aa|up_1|NC_019699.1_207750_208878_-,NA|280aa|down_1|NC_019699.1_215134_215974_+,NA|60aa|down_2|NC_019699.1_216237_216417_+,NA|59aa|down_6|NC_019699.1_219768_219945_+	NA|83aa|up_9|NC_019699.1_199520_199769_-	NA	NA|369aa|up_8|NC_019699.1_199832_200939_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|245aa|up_7|NC_019699.1_201927_202662_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|449aa|up_6|NC_019699.1_203038_204385_+	pfam00067, p450, Cytochrome P450	NA|195aa|up_5|NC_019699.1_204392_204977_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|197aa|up_4|NC_019699.1_205139_205730_-	NA	NA|229aa|up_3|NC_019699.1_205743_206430_-	NA	NA|272aa|up_2|NC_019699.1_206498_207314_-	cd05386, TraL, transfer origin protein TraL	NA|376aa|up_1|NC_019699.1_207750_208878_-	NA	NA|425aa|up_0|NC_019699.1_209016_210291_-	pfam14239, RRXRR, RRXRR protein	NA|1203aa|down_0|NC_019699.1_211398_215007_+	pfam13148, DUF3987, Protein of unknown function (DUF3987)	NA|280aa|down_1|NC_019699.1_215134_215974_+	NA	NA|60aa|down_2|NC_019699.1_216237_216417_+	NA	NA|168aa|down_3|NC_019699.1_216557_217061_-	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|192aa|down_4|NC_019699.1_217163_217739_-	pfam05685, Uma2, Putative restriction endonuclease	Cas9_archaeal|425aa|down_5|NC_019699.1_217823_219098_-	pfam14239, RRXRR, RRXRR protein	NA|59aa|down_6|NC_019699.1_219768_219945_+	NA	NA|210aa|down_7|NC_019699.1_220037_220667_+	pfam05565, Sipho_Gp157, Siphovirus Gp157	NA|557aa|down_8|NC_019699.1_220867_222538_+	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|180aa|down_9|NC_019699.1_222632_223172_+	pfam02643, DUF192, Uncharacterized ACR, COG1430
