The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_018828	Bordetella parapertussis Bpp5, complete genome	4887379	1715779	1774980	4887379	protease,tRNA,head,tail,terminase,transposase	Bordetella_phage(45.45%)	66	NA	NA
WP_010926800.1|1715779_1718437_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	2.5e-173
WP_015039414.1|1718514_1719384_-	MFS transporter	NA	NA	NA	NA	NA
WP_164926495.1|1720014_1720464_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_015039415.1|1720805_1722701_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	26.3	4.3e-18
WP_003810296.1|1722814_1722982_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1723045_1723282_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_164926688.1|1723651_1724797_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_033447541.1|1725013_1726270_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_003810304.1|1726721_1727723_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1727895_1728753_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_015039417.1|1728749_1730012_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	3.0e-28
WP_010926797.1|1730112_1730487_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_164926496.1|1730559_1731741_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1731823_1732594_+	spermidine synthase	NA	NA	NA	NA	NA
WP_015039419.1|1732707_1733472_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010928183.1|1733422_1734724_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_165446305.1|1734732_1735527_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_015039421.1|1735532_1737074_+	malonyl-CoA synthase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	1.0e-25
WP_015039422.1|1737269_1738259_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810321.1|1738415_1738928_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.4e-43
WP_015039423.1|1739086_1740061_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_015039424.1|1740170_1741061_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_015039425.1|1741062_1741857_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	3.9e-05
WP_015039426.1|1741882_1742236_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015039427.1|1742346_1742937_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003810332.1|1742947_1744126_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_015038907.1|1744161_1745382_-|transposase	ISL3-like element IS1001 family transposase	transposase	A4PE56	Ralstonia_virus	81.3	5.1e-198
WP_164926497.1|1745592_1746816_-	DUF3596 domain-containing protein	NA	A0A1W6JTA0	Pseudomonas_phage	37.7	1.8e-62
WP_164926498.1|1746812_1747067_-	excisionase	NA	NA	NA	NA	NA
WP_015039429.1|1747179_1747539_-	hypothetical protein	NA	W6MWX0	Pseudomonas_phage	44.3	1.6e-11
WP_015039430.1|1747535_1748039_-	hypothetical protein	NA	A0A1B1W266	Salmonella_phage	45.8	1.5e-26
WP_164926388.1|1748028_1748409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039432.1|1748527_1749175_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	8.8e-32
WP_015039433.1|1749171_1750158_-	phage-related DNA recombination protein	NA	H9C0R8	Aeromonas_phage	57.8	4.0e-68
WP_010926410.1|1750161_1750344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|1750340_1750718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926412.1|1750720_1750930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039435.1|1750949_1751849_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	68.1	9.4e-40
WP_015039436.1|1751887_1752772_-	pentapeptide repeat-containing protein	NA	A0A2P0VPH6	Ralstonia_phage	45.7	1.5e-10
WP_080700710.1|1753706_1753946_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_015039439.1|1754069_1754564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033448667.1|1754580_1755255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039442.1|1756931_1757147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164926499.1|1757106_1757289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039444.1|1757655_1758030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164926500.1|1758026_1758818_+	helix-turn-helix domain-containing protein	NA	A0A1B0YZZ0	Pseudomonas_phage	45.4	9.2e-15
WP_015039446.1|1758817_1759573_+	hypothetical protein	NA	U6C6D0	Ralstonia_phage	38.0	1.0e-26
WP_015039447.1|1759569_1760046_+	phage protein	NA	NA	NA	NA	NA
WP_165446306.1|1760927_1761098_+	hypothetical protein	NA	Q775A6	Bordetella_phage	98.2	1.8e-21
WP_164926501.1|1761285_1761528_+	hypothetical protein	NA	Q775B7	Bordetella_phage	45.5	1.2e-10
WP_015039451.1|1761534_1762026_+|terminase	phage terminase small subunit	terminase	A0A0B5A1T2	Achromobacter_phage	47.2	6.3e-14
WP_015039452.1|1762022_1763618_+|terminase	phage terminase large subunit	terminase	Q775B9	Bordetella_phage	97.4	1.7e-310
WP_164926502.1|1763610_1763754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164926503.1|1763917_1764379_+	GNAT family N-acetyltransferase	NA	Q775C0	Bordetella_phage	53.4	1.6e-35
WP_015039454.1|1764375_1764837_+	phage protein	NA	Q775C1	Bordetella_phage	58.8	2.8e-40
WP_164926504.1|1764839_1765154_+	hypothetical protein	NA	Q775C2	Bordetella_phage	79.5	4.7e-07
WP_015039455.1|1765155_1766823_+|head,tail	phage head-tail connector protein	head,tail	T1S9Z7	Salmonella_phage	47.3	1.2e-141
WP_015039456.1|1766866_1767214_+|protease	phage endoprotease	protease	Q775C5	Bordetella_phage	87.0	2.4e-52
WP_164926505.1|1767170_1767860_+|protease	protease	protease	Q775C6	Bordetella_phage	98.7	2.8e-108
WP_015039458.1|1767873_1768869_+	phage protein	NA	Q775C7	Bordetella_phage	98.5	1.3e-186
WP_015039459.1|1768924_1769347_+	phage protein	NA	Q775C8	Bordetella_phage	87.9	2.2e-60
WP_164926506.1|1769359_1769542_+	hypothetical protein	NA	Q775C9	Bordetella_phage	57.1	1.6e-10
WP_015039461.1|1769608_1770214_+	phage protein	NA	Q775D0	Bordetella_phage	59.0	1.4e-60
WP_015039462.1|1770217_1772269_+	phage protein	NA	Q775D1	Bordetella_phage	77.3	0.0e+00
WP_164926507.1|1772328_1772853_+	hypothetical protein	NA	Q775D2	Bordetella_phage	39.6	3.1e-27
WP_015039464.1|1772856_1774980_+	transglycosylase SLT domain-containing protein	NA	Q775D3	Bordetella_phage	91.5	0.0e+00
>prophage 2
NC_018828	Bordetella parapertussis Bpp5, complete genome	4887379	1783207	1787019	4887379		Bordetella_phage(83.33%)	7	NA	NA
WP_015039467.1|1783207_1783594_+	diversity-generating retroelement bAvd family protein	NA	Q775D7	Bordetella_phage	97.7	8.0e-65
WP_150556910.1|1783753_1784002_+	hypothetical protein	NA	Q775D9	Bordetella_phage	98.8	6.1e-42
WP_015973918.1|1784011_1784263_+	hypothetical protein	NA	Q775E0	Bordetella_phage	100.0	4.4e-40
WP_015039468.1|1784264_1784756_+	N-acetylmuramidase	NA	Q775E1	Bordetella_phage	95.7	1.3e-88
WP_164926508.1|1784756_1785389_+	hypothetical protein	NA	Q775E2	Bordetella_phage	99.0	7.9e-94
WP_015039471.1|1786018_1786300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039472.1|1786347_1787019_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	40.3	6.1e-36
>prophage 3
NC_018828	Bordetella parapertussis Bpp5, complete genome	4887379	2253901	2260898	4887379	integrase	Acinetobacter_phage(14.29%)	12	2242819:2242833	2266920:2266934
2242819:2242833	attL	TTCGCCGAGCTGCTG	NA	NA	NA	NA
WP_015039652.1|2253901_2254891_+|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.7	8.9e-76
WP_010926403.1|2254887_2255088_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_015039429.1|2255200_2255560_-	hypothetical protein	NA	W6MWX0	Pseudomonas_phage	44.3	1.6e-11
WP_015039430.1|2255556_2256060_-	hypothetical protein	NA	A0A1B1W266	Salmonella_phage	45.8	1.5e-26
WP_164926388.1|2256049_2256430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039432.1|2256548_2257196_-	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	8.8e-32
WP_015039433.1|2257192_2258179_-	phage-related DNA recombination protein	NA	H9C0R8	Aeromonas_phage	57.8	4.0e-68
WP_010926410.1|2258182_2258365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926411.1|2258361_2258739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926412.1|2258741_2258951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039653.1|2258970_2259870_-	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	68.1	9.4e-40
WP_015039654.1|2259908_2260898_-	pentapeptide repeat-containing protein	NA	A0A2P0VPH6	Ralstonia_phage	45.7	1.7e-10
2266920:2266934	attR	TTCGCCGAGCTGCTG	NA	NA	NA	NA
>prophage 4
NC_018828	Bordetella parapertussis Bpp5, complete genome	4887379	2266104	2288773	4887379	tail,terminase	Pseudomonas_phage(17.39%)	29	NA	NA
WP_164926532.1|2266104_2266896_+	helix-turn-helix domain-containing protein	NA	A0A1B0YZZ0	Pseudomonas_phage	45.4	9.2e-15
WP_015039446.1|2266895_2267651_+	hypothetical protein	NA	U6C6D0	Ralstonia_phage	38.0	1.0e-26
WP_015039661.1|2267647_2268124_+	phage protein	NA	NA	NA	NA	NA
WP_015039662.1|2268243_2269062_+	phage protein	NA	K4ICN3	Acidithiobacillus_phage	43.6	1.0e-21
WP_015039664.1|2269261_2269702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161781333.1|2269813_2269975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015039666.1|2270166_2270652_+	hypothetical protein	NA	C7U0W1	Enterobacteria_phage	62.3	1.2e-38
WP_010931447.1|2270638_2271916_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_015039667.1|2271918_2273337_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	41.9	8.2e-99
WP_015039668.1|2273365_2274421_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.8	5.2e-98
WP_014905397.1|2274426_2274669_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	54.5	1.5e-16
WP_015039669.1|2274791_2275394_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	47.5	2.6e-30
WP_015039670.1|2275420_2276389_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	72.3	1.3e-124
WP_015039671.1|2276398_2276650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015039672.1|2276712_2277162_+	hypothetical protein	NA	I6WLM5	Burkholderia_virus	51.6	2.2e-29
WP_015039673.1|2277155_2277635_+	hypothetical protein	NA	A0A088C4X4	Shewanella_sp._phage	39.3	1.2e-12
WP_010931440.1|2277636_2277837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|2277836_2278232_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_015039674.1|2278228_2278627_+	hypothetical protein	NA	A0A088FBW9	Salmonella_phage	37.8	2.6e-18
WP_015039675.1|2278623_2279046_+	DUF4128 domain-containing protein	NA	I6PDJ8	Cronobacter_phage	29.2	2.6e-08
WP_010931436.1|2279053_2279554_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_015039676.1|2279808_2280327_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|2280336_2280666_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_015039677.1|2280683_2280974_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	43.0	2.0e-15
WP_015039678.1|2280999_2283435_+|tail	phage tail tape measure protein	tail	A0A1V0E821	Vibrio_phage	34.7	4.6e-97
WP_010931432.1|2283444_2283804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015039679.1|2283871_2284405_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	48.0	1.3e-41
WP_015039680.1|2284401_2284791_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	1.8e-35
WP_015039681.1|2284783_2288773_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.9	1.4e-215
>prophage 5
NC_018828	Bordetella parapertussis Bpp5, complete genome	4887379	2298072	2306530	4887379	protease,transposase	Lake_Baikal_phage(16.67%)	7	NA	NA
WP_003812516.1|2298072_2298279_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	8.1e-16
WP_033448628.1|2298376_2298937_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_014905723.1|2299133_2300444_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|2300446_2301100_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010926436.1|2301204_2302509_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	5.4e-129
WP_015039690.1|2302697_2305151_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.1	6.6e-221
WP_015039524.1|2305309_2306530_+|transposase	ISL3-like element IS1001 family transposase	transposase	A4PE56	Ralstonia_virus	81.3	8.7e-198
>prophage 6
NC_018828	Bordetella parapertussis Bpp5, complete genome	4887379	2975524	2982984	4887379	tRNA	uncultured_Mediterranean_phage(33.33%)	8	NA	NA
WP_015039995.1|2975524_2976409_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_010928874.1|2976426_2977206_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811017.1|2977190_2977949_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	6.2e-69
WP_023852762.1|2978086_2978722_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003811013.1|2978766_2979807_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.6	9.3e-92
WP_003811011.1|2979941_2981234_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811009.1|2981439_2982465_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811007.1|2982600_2982984_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
