assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000317955.1_ASM31795v1	NC_018829	Bordetella bronchiseptica MO149, complete genome	1	269215-269314	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GACAGGCACCTGCCGAATCCTGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|460aa|up_9|NC_018829.1_259341_260721_+	PRK09496, trkA, Trk system potassium transporter TrkA	NA|490aa|up_8|NC_018829.1_260769_262239_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|178aa|up_7|NC_018829.1_262318_262852_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|332aa|up_6|NC_018829.1_262859_263855_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|217aa|up_5|NC_018829.1_263937_264588_+	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|321aa|up_4|NC_018829.1_264911_265874_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|251aa|up_3|NC_018829.1_265899_266652_+	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|274aa|up_2|NC_018829.1_266671_267493_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|344aa|up_1|NC_018829.1_267520_268552_+	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism]	NA|206aa|up_0|NC_018829.1_268567_269185_+	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	NA|172aa|down_0|NC_018829.1_269334_269850_-	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit	NA|430aa|down_1|NC_018829.1_269864_271154_-	cd08880, RHO_alpha_C_ahdA1c-like, C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp	NA|421aa|down_2|NC_018829.1_271189_272452_-	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	NA|104aa|down_3|NC_018829.1_272454_272766_-	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO)	NA|368aa|down_4|NC_018829.1_273235_274339_+	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|793aa|down_5|NC_018829.1_274368_276747_+	pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde dehydrogenase	NA|279aa|down_6|NC_018829.1_276743_277580_+	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase	NA|396aa|down_7|NC_018829.1_277576_278764_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|343aa|down_8|NC_018829.1_278798_279827_+	pfam09084, NMT1, NMT1/THI5 like	NA|263aa|down_9|NC_018829.1_279823_280612_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_000317955.1_ASM31795v1	NC_018829	Bordetella bronchiseptica MO149, complete genome	2	705835-705955	2	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CGGGACAGGCACCAGCAGGTGCGGGCG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|97aa|up_1|NC_018829.1_704622_704913_+,NA	NA|233aa|up_9|NC_018829.1_696183_696882_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|510aa|up_8|NC_018829.1_697095_698625_+	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B	NA|388aa|up_7|NC_018829.1_698641_699805_+	PRK09028, PRK09028, cystathionine beta-lyase; Provisional	NA|117aa|up_6|NC_018829.1_699835_700186_+	cd06150, YjgF_YER057c_UK114_like_2, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|320aa|up_5|NC_018829.1_700488_701448_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|371aa|up_4|NC_018829.1_701472_702585_+	COG5276, COG5276, Uncharacterized conserved protein [Function unknown]	NA|341aa|up_3|NC_018829.1_702599_703622_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|334aa|up_2|NC_018829.1_703618_704620_+	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|97aa|up_1|NC_018829.1_704622_704913_+	NA	NA|248aa|up_0|NC_018829.1_705002_705746_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|297aa|down_0|NC_018829.1_706217_707108_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|412aa|down_1|NC_018829.1_707108_708344_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|277aa|down_2|NC_018829.1_708428_709259_+	cd13713, PBP2_Cystine_like_1, Substrate binding domain of putative ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|217aa|down_3|NC_018829.1_709255_709906_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|250aa|down_4|NC_018829.1_709935_710685_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|413aa|down_5|NC_018829.1_710681_711920_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|266aa|down_6|NC_018829.1_711992_712790_+	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|421aa|down_7|NC_018829.1_712827_714090_+	PRK13590, PRK13590, putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional	NA|425aa|down_8|NC_018829.1_714095_715370_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|309aa|down_9|NC_018829.1_715378_716305_-	cd10977, CE4_PuuE_SpCDA1, Catalytic domain of bacterial PuuE allantoinases, Schizosaccharomyces pombe chitin deacetylase 1 (SpCDA1), and similar proteins
GCF_000317955.1_ASM31795v1	NC_018829	Bordetella bronchiseptica MO149, complete genome	3	1292635-1292709	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CGCCGCGCTGCACGGTGCCTGTCCC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|97aa|up_5|NC_018829.1_1287903_1288194_-,NA|111aa|down_4|NC_018829.1_1297114_1297447_+	NA|341aa|up_9|NC_018829.1_1284958_1285981_-	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent  Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold	NA|207aa|up_8|NC_018829.1_1286015_1286636_-	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway	NA|140aa|up_7|NC_018829.1_1286686_1287106_-	TIGR02096, putative_cyclase, conserved hypothetical protein, steroid delta-isomerase-related	NA|176aa|up_6|NC_018829.1_1287338_1287866_-	cd12108, Hr-like, Hemerythrin-like domain	NA|97aa|up_5|NC_018829.1_1287903_1288194_-	NA	NA|212aa|up_4|NC_018829.1_1288190_1288826_-	pfam09859, Oxygenase-NA, Oxygenase, catalyzing oxidative methylation of damaged DNA	NA|359aa|up_3|NC_018829.1_1288822_1289899_-	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|220aa|up_2|NC_018829.1_1289957_1290617_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|168aa|up_1|NC_018829.1_1290718_1291222_-	cd07246, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|386aa|up_0|NC_018829.1_1291389_1292547_-	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|463aa|down_0|NC_018829.1_1292886_1294275_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|336aa|down_1|NC_018829.1_1294276_1295284_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|49aa|down_2|NC_018829.1_1295294_1295441_+	pfam10617, DUF2474, Protein of unknown function (DUF2474)	NA|474aa|down_3|NC_018829.1_1295457_1296879_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|111aa|down_4|NC_018829.1_1297114_1297447_+	NA	NA|1054aa|down_5|NC_018829.1_1297457_1300619_-	PRK14991, PRK14991, tetrathionate reductase subunit TtrA	NA|345aa|down_6|NC_018829.1_1300645_1301680_-	PRK14992, PRK14992, tetrathionate reductase subunit TtrC	NA|258aa|down_7|NC_018829.1_1301693_1302467_-	PRK14993, PRK14993, tetrathionate reductase subunit TtrB	NA|118aa|down_8|NC_018829.1_1302782_1303136_+	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands	NA|309aa|down_9|NC_018829.1_1303158_1304085_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_000317955.1_ASM31795v1	NC_018829	Bordetella bronchiseptica MO149, complete genome	4	1417770-1417872	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GGGGACAGGCGCCTCGCGCATCGGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA|239aa|down_9|NC_018829.1_1430986_1431703_+	NA|462aa|up_9|NC_018829.1_1406035_1407421_-	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|233aa|up_8|NC_018829.1_1407417_1408116_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|328aa|up_7|NC_018829.1_1408275_1409259_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|350aa|up_6|NC_018829.1_1410229_1411279_+	cd19102, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|548aa|up_5|NC_018829.1_1411275_1412919_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|296aa|up_4|NC_018829.1_1412915_1413803_-	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]	NA|158aa|up_3|NC_018829.1_1413943_1414417_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|341aa|up_2|NC_018829.1_1414406_1415429_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|476aa|up_1|NC_018829.1_1415425_1416853_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|243aa|up_0|NC_018829.1_1417009_1417738_+	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily	NA|312aa|down_0|NC_018829.1_1417939_1418875_-	PRK13022, secF, protein translocase subunit SecF	NA|627aa|down_1|NC_018829.1_1418924_1420805_-	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|115aa|down_2|NC_018829.1_1420871_1421216_-	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|379aa|down_3|NC_018829.1_1421362_1422499_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|358aa|down_4|NC_018829.1_1422495_1423569_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|479aa|down_5|NC_018829.1_1423726_1425163_+	COG2027, DacB, D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) [Cell envelope biogenesis, outer membrane]	NA|214aa|down_6|NC_018829.1_1425253_1425895_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|915aa|down_7|NC_018829.1_1426489_1429234_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|474aa|down_8|NC_018829.1_1429300_1430722_-	PRK10637, cysG, siroheme synthase CysG	NA|239aa|down_9|NC_018829.1_1430986_1431703_+	NA
GCF_000317955.1_ASM31795v1	NC_018829	Bordetella bronchiseptica MO149, complete genome	5	2255686-2255771	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CTGTCCCCGCCGGGACAGGCACAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|682aa|up_9|NC_018829.1_2247326_2249372_-	pfam04632, FUSC, Fusaric acid resistance protein family	NA|158aa|up_8|NC_018829.1_2249368_2249842_-	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional	NA|207aa|up_7|NC_018829.1_2250097_2250718_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|267aa|up_6|NC_018829.1_2250853_2251654_+	PRK07090, PRK07090, class II aldolase/adducin domain protein; Provisional	NA|364aa|up_5|NC_018829.1_2251708_2252800_+	cd13682, PBP2_TRAP_alpha-ketoacid, Substrate-binding component of an alpha-keto acid binding Tripartite ATP-independent Periplasmic transporter and related proteins; contains the type 2 periplasmic-binding protein fold	NA|148aa|up_4|NC_018829.1_2252821_2253265_-	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|211aa|up_3|NC_018829.1_2253293_2253926_-	TIGR04508, queE_Cx14CxxC, 7-carboxy-7-deazaguanine synthase, Cx14CxxC type	NA|139aa|up_2|NC_018829.1_2254036_2254453_+	PRK09256, PRK09256, aminoacyl-tRNA hydrolase	NA|231aa|up_1|NC_018829.1_2254445_2255138_+	pfam09997, DUF2238, Predicted membrane protein (DUF2238)	NA|125aa|up_0|NC_018829.1_2255244_2255619_+	COG3686, COG3686, Predicted membrane protein [Function unknown]	NA|270aa|down_0|NC_018829.1_2255798_2256608_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|315aa|down_1|NC_018829.1_2256703_2257648_+	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|324aa|down_2|NC_018829.1_2257686_2258658_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|146aa|down_3|NC_018829.1_2258748_2259186_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|294aa|down_4|NC_018829.1_2259244_2260126_-	pfam05742, TANGO2, Transport and Golgi organisation 2	NA|230aa|down_5|NC_018829.1_2260207_2260897_+	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein	NA|535aa|down_6|NC_018829.1_2260911_2262516_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|263aa|down_7|NC_018829.1_2262555_2263344_-	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|361aa|down_8|NC_018829.1_2263469_2264552_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|363aa|down_9|NC_018829.1_2264551_2265640_+	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
GCF_000317955.1_ASM31795v1	NC_018829	Bordetella bronchiseptica MO149, complete genome	6	2763889-2763995	6	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CTGTCCCCGCAGGGGGACTGGCACCCG	27	1	1	2763916-2763968	NC_018829.1_2764034-2764086	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA|148aa|down_2|NC_018829.1_2767804_2768248_-	NA|492aa|up_9|NC_018829.1_2756136_2757612_+	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI	NA|149aa|up_8|NC_018829.1_2757604_2758051_+	PRK05689, fliJ, flagella biosynthesis chaperone FliJ	NA|442aa|up_7|NC_018829.1_2758056_2759382_+	cd17470, T3SS_Flik_C, C-terminal domain of flagellar hook-length control protein FliK and similar domains	NA|191aa|up_6|NC_018829.1_2759523_2760096_+	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|337aa|up_5|NC_018829.1_2760098_2761109_+	PRK06666, fliM, flagellar motor switch protein FliM; Validated	NA|174aa|up_4|NC_018829.1_2761101_2761623_+	PRK07963, fliN, flagellar motor switch protein FliN; Validated	NA|114aa|up_3|NC_018829.1_2761633_2761975_+	pfam04347, FliO, Flagellar biosynthesis protein, FliO	NA|264aa|up_2|NC_018829.1_2761986_2762778_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|90aa|up_1|NC_018829.1_2762794_2763064_+	PRK05700, fliQ, flagellar type III secretion system protein FliQ	NA|263aa|up_0|NC_018829.1_2763086_2763875_+	PRK05701, fliR, flagellar type III secretion system protein FliR	NA|533aa|down_0|NC_018829.1_2764190_2765789_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|575aa|down_1|NC_018829.1_2765967_2767692_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|148aa|down_2|NC_018829.1_2767804_2768248_-	NA	NA|613aa|down_3|NC_018829.1_2768274_2770113_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|614aa|down_4|NC_018829.1_2770233_2772075_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|511aa|down_5|NC_018829.1_2772153_2773686_-	PRK12718, flgL, flagellar hook-associated protein FlgL; Provisional	NA|549aa|down_6|NC_018829.1_2773719_2775366_-	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated	NA|340aa|down_7|NC_018829.1_2775435_2776455_-	PRK12713, flgJ, flagellar rod assembly protein/muramidase FlgJ; Provisional	NA|378aa|down_8|NC_018829.1_2776472_2777606_-	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|230aa|down_9|NC_018829.1_2777608_2778298_-	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed
GCF_000317955.1_ASM31795v1	NC_018829	Bordetella bronchiseptica MO149, complete genome	7	3950462-3950543	7	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CTGTCCCCGCCGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|125aa|up_1|NC_018829.1_3946907_3947282_-,NA|81aa|down_4|NC_018829.1_3954872_3955115_-	NA|327aa|up_9|NC_018829.1_3940227_3941208_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|419aa|up_8|NC_018829.1_3941406_3942663_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|142aa|up_7|NC_018829.1_3942865_3943291_+	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|121aa|up_6|NC_018829.1_3943341_3943704_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|118aa|up_5|NC_018829.1_3943716_3944070_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|296aa|up_4|NC_018829.1_3944230_3945118_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|391aa|up_3|NC_018829.1_3945139_3946312_+	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|185aa|up_2|NC_018829.1_3946315_3946870_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|125aa|up_1|NC_018829.1_3946907_3947282_-	NA	NA|917aa|up_0|NC_018829.1_3947614_3950365_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|374aa|down_0|NC_018829.1_3950550_3951672_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|642aa|down_1|NC_018829.1_3951772_3953698_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|127aa|down_2|NC_018829.1_3953788_3954169_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|185aa|down_3|NC_018829.1_3954176_3954731_-	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|81aa|down_4|NC_018829.1_3954872_3955115_-	NA	NA|363aa|down_5|NC_018829.1_3955196_3956285_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|335aa|down_6|NC_018829.1_3956342_3957347_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|300aa|down_7|NC_018829.1_3957461_3958361_+	PRK02155, ppnK, NAD kinase	NA|554aa|down_8|NC_018829.1_3958376_3960038_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|140aa|down_9|NC_018829.1_3960516_3960936_-	pfam01475, FUR, Ferric uptake regulator family
GCF_000317955.1_ASM31795v1	NC_018829	Bordetella bronchiseptica MO149, complete genome	8	4318553-4318646	8	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,DinG,cas3	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|398aa|up_9|NC_018829.1_4306976_4308170_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|NC_018829.1_4308236_4309265_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|387aa|up_7|NC_018829.1_4309291_4310452_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_6|NC_018829.1_4310589_4311567_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NC_018829.1_4311577_4312549_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NC_018829.1_4312615_4313401_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_3|NC_018829.1_4313393_4314626_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NC_018829.1_4314822_4315578_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NC_018829.1_4315688_4316207_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|708aa|up_0|NC_018829.1_4316203_4318327_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|NC_018829.1_4318718_4319189_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|NC_018829.1_4319277_4319622_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|NC_018829.1_4319721_4321122_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_3|NC_018829.1_4321310_4322225_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_4|NC_018829.1_4322221_4322881_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_5|NC_018829.1_4322970_4323894_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_6|NC_018829.1_4323899_4324355_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_7|NC_018829.1_4324351_4325455_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|90aa|down_8|NC_018829.1_4325413_4325683_+	pfam04138, GtrA, GtrA-like protein	NA|540aa|down_9|NC_018829.1_4325642_4327262_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
GCF_000317955.1_ASM31795v1	NC_018829	Bordetella bronchiseptica MO149, complete genome	9	4592699-4592783	9	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GGGTGCCTGTCCCCGCGGGGACAG	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|429aa|up_9|NC_018829.1_4584706_4585993_-	pfam00034, Cytochrom_C, Cytochrome c	NA|251aa|up_8|NC_018829.1_4586003_4586756_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|291aa|up_7|NC_018829.1_4586927_4587800_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|NC_018829.1_4587796_4588747_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|191aa|up_5|NC_018829.1_4588743_4589316_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|313aa|up_4|NC_018829.1_4589312_4590251_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|178aa|up_3|NC_018829.1_4590317_4590851_+	PRK14685, PRK14685, hypothetical protein; Provisional	NA|198aa|up_2|NC_018829.1_4590859_4591453_+	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|248aa|up_1|NC_018829.1_4591449_4592193_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|164aa|up_0|NC_018829.1_4592189_4592681_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|263aa|down_0|NC_018829.1_4592795_4593584_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|301aa|down_1|NC_018829.1_4593845_4594748_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|249aa|down_2|NC_018829.1_4594747_4595494_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|192aa|down_3|NC_018829.1_4595543_4596119_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|498aa|down_4|NC_018829.1_4596331_4597825_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|down_5|NC_018829.1_4597835_4598891_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|down_6|NC_018829.1_4598916_4600053_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|down_7|NC_018829.1_4600049_4602002_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|down_8|NC_018829.1_4602015_4602579_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|down_9|NC_018829.1_4602565_4603450_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
