assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000317975.2_ASM31797v2	NC_019425	Carnobacterium maltaromaticum LMA28, complete genome	1	1087784-1087884	1	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh	Orphan	TTAGCTCAGTTGGGAGAGCATCTG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh	NA|131aa|up_2|NC_019425.2_1079270_1079663_+,NA	NA|79aa|up_9|NC_019425.2_1073511_1073748_+	pfam07293, DUF1450, Protein of unknown function (DUF1450)	NA|331aa|up_8|NC_019425.2_1073912_1074905_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|164aa|up_7|NC_019425.2_1075082_1075574_-	pfam02681, DUF212, Divergent PAP2 family	NA|198aa|up_6|NC_019425.2_1075748_1076342_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|288aa|up_5|NC_019425.2_1076521_1077385_+	pfam00480, ROK, ROK family	NA|391aa|up_4|NC_019425.2_1077433_1078606_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|126aa|up_3|NC_019425.2_1078799_1079177_+	PRK08059, PRK08059, general stress protein 13; Validated	NA|131aa|up_2|NC_019425.2_1079270_1079663_+	NA	NA|449aa|up_1|NC_019425.2_1079798_1081145_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|177aa|up_0|NC_019425.2_1081419_1081950_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|265aa|down_0|NC_019425.2_1089788_1090583_-	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase	NA|397aa|down_1|NC_019425.2_1090841_1092032_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|495aa|down_2|NC_019425.2_1092220_1093705_+	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|188aa|down_3|NC_019425.2_1093748_1094312_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|319aa|down_4|NC_019425.2_1094441_1095398_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|405aa|down_5|NC_019425.2_1095557_1096772_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|223aa|down_6|NC_019425.2_1096828_1097497_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|320aa|down_7|NC_019425.2_1097637_1098597_-	pfam13349, DUF4097, Putative adhesin	NA|215aa|down_8|NC_019425.2_1098586_1099231_-	pfam08006, DUF1700, Protein of unknown function (DUF1700)	NA|106aa|down_9|NC_019425.2_1099235_1099553_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_000317975.2_ASM31797v2	NC_019425	Carnobacterium maltaromaticum LMA28, complete genome	2	2352075-2352183	2	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh	Orphan	CCCTCTTTCAAGTTTTGTGAGAGAGGGGGGGTAGGGGGGT	40	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh	NA|151aa|up_6|NC_019425.2_2346578_2347031_-,NA|111aa|up_3|NC_019425.2_2349403_2349736_-,NA|123aa|up_0|NC_019425.2_2351592_2351961_-,NA|96aa|down_4|NC_019425.2_2360010_2360298_-,NA|63aa|down_8|NC_019425.2_2362537_2362726_-,NA|202aa|down_9|NC_019425.2_2362789_2363395_-	NA|399aa|up_9|NC_019425.2_2343472_2344669_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|228aa|up_8|NC_019425.2_2344665_2345349_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|401aa|up_7|NC_019425.2_2345345_2346548_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|151aa|up_6|NC_019425.2_2346578_2347031_-	NA	NA|73aa|up_5|NC_019425.2_2347331_2347550_-	pfam09221, Bacteriocin_IId, Bacteriocin class IId cyclical uberolysin-like	NA|391aa|up_4|NC_019425.2_2348204_2349377_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|111aa|up_3|NC_019425.2_2349403_2349736_-	NA	NA|178aa|up_2|NC_019425.2_2349850_2350384_-	pfam01944, SpoIIM, Stage II sporulation protein M	NA|232aa|up_1|NC_019425.2_2350380_2351076_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|123aa|up_0|NC_019425.2_2351592_2351961_-	NA	NA|710aa|down_0|NC_019425.2_2352635_2354765_-	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily	NA|777aa|down_1|NC_019425.2_2354790_2357121_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|836aa|down_2|NC_019425.2_2357124_2359632_-	pfam12846, AAA_10, AAA-like domain	NA|137aa|down_3|NC_019425.2_2359628_2360039_-	pfam12648, TcpE, TcpE family	NA|96aa|down_4|NC_019425.2_2360010_2360298_-	NA	NA|343aa|down_5|NC_019425.2_2360510_2361539_-	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|107aa|down_6|NC_019425.2_2361531_2361852_-	TIGR03338, phnR_burk, phosphonate utilization associated transcriptional regulator	NA|229aa|down_7|NC_019425.2_2361851_2362538_-	smart00730, PSN, Presenilin, signal peptide peptidase, family	NA|63aa|down_8|NC_019425.2_2362537_2362726_-	NA	NA|202aa|down_9|NC_019425.2_2362789_2363395_-	NA
GCF_000317975.2_ASM31797v2	NC_019425	Carnobacterium maltaromaticum LMA28, complete genome	3	2526079-2526230	3	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh	Orphan	TGGCGGAACCACAATCCGCTGTGTTAACCACTTCACCACAATCGCCAT	48	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh	NA|173aa|up_8|NC_019425.2_2517172_2517691_-,NA|228aa|up_7|NC_019425.2_2517770_2518454_-,NA|46aa|up_1|NC_019425.2_2522619_2522757_-,NA	NA|213aa|up_9|NC_019425.2_2516477_2517116_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|173aa|up_8|NC_019425.2_2517172_2517691_-	NA	NA|228aa|up_7|NC_019425.2_2517770_2518454_-	NA	NA|228aa|up_6|NC_019425.2_2518450_2519134_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|118aa|up_5|NC_019425.2_2519168_2519522_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|185aa|up_4|NC_019425.2_2519568_2520123_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|593aa|up_3|NC_019425.2_2520294_2522073_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|117aa|up_2|NC_019425.2_2522246_2522597_-	pfam08951, EntA_Immun, Enterocin A Immunity	NA|46aa|up_1|NC_019425.2_2522619_2522757_-	NA	NA|440aa|up_0|NC_019425.2_2522880_2524200_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|543aa|down_0|NC_019425.2_2532988_2534617_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|757aa|down_1|NC_019425.2_2535363_2537634_-	PRK13807, PRK13807, maltose phosphorylase; Provisional	NA|281aa|down_2|NC_019425.2_2537630_2538473_-	COG5521, COG5521, Predicted integral membrane protein [Function unknown]	NA|284aa|down_3|NC_019425.2_2538521_2539373_-	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]	NA|435aa|down_4|NC_019425.2_2539374_2540679_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|423aa|down_5|NC_019425.2_2540972_2542241_-	cd13658, PBP2_CMBP, The periplasmic binding component of ABC transport systems specific for cyclo/maltodextrin; possess the type 2 periplasmic binding fold	NA|593aa|down_6|NC_019425.2_2542680_2544459_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|566aa|down_7|NC_019425.2_2544471_2546169_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|321aa|down_8|NC_019425.2_2546442_2547405_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|155aa|down_9|NC_019425.2_2547553_2548018_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
GCF_000317975.2_ASM31797v2	NC_019425	Carnobacterium maltaromaticum LMA28, complete genome	4	2542482-2542603	4	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh	Orphan	TTTAAGGACCACAGTCCATCTTTGATGGATGTGTATCATG	40	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh	NA|46aa|up_7|NC_019425.2_2522619_2522757_-,NA	NA|593aa|up_9|NC_019425.2_2520294_2522073_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|117aa|up_8|NC_019425.2_2522246_2522597_-	pfam08951, EntA_Immun, Enterocin A Immunity	NA|46aa|up_7|NC_019425.2_2522619_2522757_-	NA	NA|440aa|up_6|NC_019425.2_2522880_2524200_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|543aa|up_5|NC_019425.2_2532988_2534617_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|757aa|up_4|NC_019425.2_2535363_2537634_-	PRK13807, PRK13807, maltose phosphorylase; Provisional	NA|281aa|up_3|NC_019425.2_2537630_2538473_-	COG5521, COG5521, Predicted integral membrane protein [Function unknown]	NA|284aa|up_2|NC_019425.2_2538521_2539373_-	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]	NA|435aa|up_1|NC_019425.2_2539374_2540679_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|423aa|up_0|NC_019425.2_2540972_2542241_-	cd13658, PBP2_CMBP, The periplasmic binding component of ABC transport systems specific for cyclo/maltodextrin; possess the type 2 periplasmic binding fold	NA|593aa|down_0|NC_019425.2_2542680_2544459_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|566aa|down_1|NC_019425.2_2544471_2546169_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|321aa|down_2|NC_019425.2_2546442_2547405_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|155aa|down_3|NC_019425.2_2547553_2548018_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|431aa|down_4|NC_019425.2_2548321_2549614_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|364aa|down_5|NC_019425.2_2549851_2550943_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|289aa|down_6|NC_019425.2_2550996_2551863_-	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|178aa|down_7|NC_019425.2_2552032_2552566_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|501aa|down_8|NC_019425.2_2552713_2554216_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|399aa|down_9|NC_019425.2_2554914_2556111_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
GCF_000317975.2_ASM31797v2	NC_019425	Carnobacterium maltaromaticum LMA28, complete genome	5	3350263-3350363	5	CRISPRCasFinder	no		WYL,cas3,csa3,DinG,DEDDh	Orphan	CAGATGCTCTACCAACTGAGCTAA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DinG,DEDDh	NA|155aa|up_8|NC_019425.2_3340321_3340786_+,NA|117aa|up_2|NC_019425.2_3345888_3346239_-,NA|69aa|down_0|NC_019425.2_3356652_3356859_-,NA|277aa|down_7|NC_019425.2_3363483_3364314_-,NA|66aa|down_9|NC_019425.2_3365169_3365367_-	NA|113aa|up_9|NC_019425.2_3339970_3340309_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_8|NC_019425.2_3340321_3340786_+	NA	NA|247aa|up_7|NC_019425.2_3341037_3341778_+	pfam07553, Lipoprotein_Ltp, Host cell surface-exposed lipoprotein	NA|381aa|up_6|NC_019425.2_3341897_3343040_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|271aa|up_5|NC_019425.2_3343397_3344210_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|174aa|up_4|NC_019425.2_3344284_3344806_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|289aa|up_3|NC_019425.2_3344947_3345814_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|117aa|up_2|NC_019425.2_3345888_3346239_-	NA	NA|831aa|up_1|NC_019425.2_3346341_3348834_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|154aa|up_0|NC_019425.2_3348864_3349326_-	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|69aa|down_0|NC_019425.2_3356652_3356859_-	NA	NA|258aa|down_1|NC_019425.2_3356950_3357724_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|460aa|down_2|NC_019425.2_3357923_3359303_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|321aa|down_3|NC_019425.2_3359370_3360333_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|736aa|down_4|NC_019425.2_3360402_3362610_-	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|127aa|down_5|NC_019425.2_3362554_3362935_-	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|78aa|down_6|NC_019425.2_3362937_3363171_-	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH	NA|277aa|down_7|NC_019425.2_3363483_3364314_-	NA	NA|185aa|down_8|NC_019425.2_3364404_3364959_-	pfam16729, DUF5067, Domain of unknown function (DUF5067)	NA|66aa|down_9|NC_019425.2_3365169_3365367_-	NA
