assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	1	335049-335160	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGTTGCCGATCA	25	1	6	335122-335138|335122-335138|335122-335138|335122-335138|335122-335138|335122-335138	NC_020089.1_845269-845253|NC_020089.1_1194291-1194307|NC_020089.1_1218034-1218018|NC_020089.1_2431378-2431394|NC_020089.1_2805803-2805819|NC_020089.1_4046225-4046241	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_0|NC_020089.1_333380_333563_-,NA	NA|398aa|up_9|NC_020089.1_323558_324752_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NC_020089.1_324787_326470_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NC_020089.1_326486_328682_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NC_020089.1_328795_329929_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NC_020089.1_329925_330546_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NC_020089.1_330642_331224_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NC_020089.1_331153_331879_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NC_020089.1_331968_332889_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NC_020089.1_332928_333357_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_0|NC_020089.1_333380_333563_-	NA	NA|887aa|down_0|NC_020089.1_339677_342338_-	pfam00934, PE, PE family	NA|537aa|down_1|NC_020089.1_342607_344218_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NC_020089.1_344241_345150_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NC_020089.1_345373_347269_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NC_020089.1_347265_348882_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NC_020089.1_348878_352871_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NC_020089.1_352867_353176_+	pfam00934, PE, PE family	NA|514aa|down_7|NC_020089.1_353178_354720_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NC_020089.1_354768_355062_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NC_020089.1_355091_355382_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	2	340831-341886	1,2	CRT,PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	NNNNNNCCGCCGGCGCCGCCG,ATCCGCCGCTACCGCCGGTGCCGCCGGCGCCGAACAGCCCGCC	21,43	5	293	341689-341715|341734-341760|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341779-341796|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341815-341832|341851-341868|341851-341868|341851-341868	NC_020089.1_338935-338961|NC_020089.1_338935-338961|NC_020089.1_334463-334480|NC_020089.1_338191-338208|NC_020089.1_338317-338334|NC_020089.1_338962-338979|NC_020089.1_676926-676943|NC_020089.1_678144-678161|NC_020089.1_1095675-1095658|NC_020089.1_1096770-1096753|NC_020089.1_1193981-1193998|NC_020089.1_1623275-1623292|NC_020089.1_1623935-1623952|NC_020089.1_1636667-1636684|NC_020089.1_1641826-1641843|NC_020089.1_1994340-1994357|NC_020089.1_2431374-2431391|NC_020089.1_2695470-2695453|NC_020089.1_2805799-2805816|NC_020089.1_3160201-3160184|NC_020089.1_3160783-3160766|NC_020089.1_3161020-3161003|NC_020089.1_3735832-3735849|NC_020089.1_3736798-3736815|NC_020089.1_3737915-3737932|NC_020089.1_3737960-3737977|NC_020089.1_3738914-3738931|NC_020089.1_3941705-3941688|NC_020089.1_3942308-3942291|NC_020089.1_132478-132461|NC_020089.1_151004-150987|NC_020089.1_334031-334048|NC_020089.1_334607-334624|NC_020089.1_335450-335467|NC_020089.1_337024-337041|NC_020089.1_337210-337227|NC_020089.1_338425-338442|NC_020089.1_338866-338883|NC_020089.1_365347-365330|NC_020089.1_365851-365834|NC_020089.1_627680-627663|NC_020089.1_676908-676925|NC_020089.1_678699-678716|NC_020089.1_678885-678902|NC_020089.1_841629-841612|NC_020089.1_845228-845211|NC_020089.1_932920-932937|NC_020089.1_973011-973028|NC_020089.1_1096689-1096672|NC_020089.1_1193357-1193374|NC_020089.1_1193654-1193671|NC_020089.1_1194047-1194064|NC_020089.1_1194584-1194601|NC_020089.1_1195672-1195689|NC_020089.1_1195771-1195788|NC_020089.1_1196503-1196520|NC_020089.1_1218017-1218000|NC_020089.1_1222275-1222258|NC_020089.1_1222812-1222795|NC_020089.1_1223430-1223413|NC_020089.1_1389638-1389655|NC_020089.1_1390673-1390690|NC_020089.1_1494548-1494565|NC_020089.1_1494809-1494826|NC_020089.1_1495124-1495141|NC_020089.1_1578181-1578198|NC_020089.1_1636649-1636666|NC_020089.1_1636778-1636795|NC_020089.1_1636970-1636987|NC_020089.1_1637018-1637035|NC_020089.1_1637627-1637644|NC_020089.1_1637675-1637692|NC_020089.1_1638317-1638334|NC_020089.1_1639085-1639102|NC_020089.1_1641256-1641273|NC_020089.1_1641919-1641936|NC_020089.1_1642675-1642692|NC_020089.1_1661286-1661303|NC_020089.1_1860749-1860766|NC_020089.1_1994490-1994507|NC_020089.1_2065724-2065741|NC_020089.1_2065898-2065915|NC_020089.1_2366768-2366785|NC_020089.1_2395589-2395606|NC_020089.1_2431653-2431670|NC_020089.1_2695566-2695549|NC_020089.1_2695698-2695681|NC_020089.1_2796588-2796605|NC_020089.1_2803267-2803284|NC_020089.1_2803693-2803710|NC_020089.1_2803711-2803728|NC_020089.1_2804170-2804187|NC_020089.1_2805205-2805222|NC_020089.1_2805646-2805663|NC_020089.1_3053869-3053852|NC_020089.1_3736444-3736461|NC_020089.1_3736660-3736677|NC_020089.1_3737035-3737052|NC_020089.1_3737297-3737314|NC_020089.1_3737375-3737392|NC_020089.1_3737843-3737860|NC_020089.1_3738839-3738856|NC_020089.1_3740165-3740182|NC_020089.1_3740201-3740218|NC_020089.1_3778628-3778611|NC_020089.1_3799833-3799816|NC_020089.1_3800406-3800389|NC_020089.1_3800637-3800620|NC_020089.1_3934866-3934849|NC_020089.1_3935055-3935038|NC_020089.1_3935280-3935263|NC_020089.1_3935709-3935692|NC_020089.1_3936258-3936241|NC_020089.1_3936345-3936328|NC_020089.1_3936540-3936523|NC_020089.1_3940424-3940407|NC_020089.1_3941399-3941382|NC_020089.1_3941723-3941706|NC_020089.1_3942002-3941985|NC_020089.1_3942326-3942309|NC_020089.1_3942977-3942960|NC_020089.1_3943574-3943557|NC_020089.1_3943943-3943926|NC_020089.1_3944171-3944154|NC_020089.1_3944597-3944580|NC_020089.1_3944987-3944970|NC_020089.1_3949240-3949223|NC_020089.1_3949657-3949640|NC_020089.1_3949750-3949733|NC_020089.1_3950002-3949985|NC_020089.1_3950095-3950078|NC_020089.1_3950347-3950330|NC_020089.1_3950440-3950423|NC_020089.1_3950692-3950675|NC_020089.1_3950785-3950768|NC_020089.1_3951037-3951020|NC_020089.1_3951130-3951113|NC_020089.1_3951382-3951365|NC_020089.1_3951925-3951908|NC_020089.1_3952165-3952148|NC_020089.1_3953080-3953063|NC_020089.1_3953146-3953129|NC_020089.1_3954109-3954092|NC_020089.1_3956910-3956893|NC_020089.1_4040876-4040893|NC_020089.1_4046731-4046748|NC_020089.1_334463-334480|NC_020089.1_338191-338208|NC_020089.1_338317-338334|NC_020089.1_338962-338979|NC_020089.1_676926-676943|NC_020089.1_678144-678161|NC_020089.1_1095675-1095658|NC_020089.1_1096770-1096753|NC_020089.1_1193981-1193998|NC_020089.1_1623275-1623292|NC_020089.1_1623935-1623952|NC_020089.1_1636667-1636684|NC_020089.1_1641826-1641843|NC_020089.1_1994340-1994357|NC_020089.1_2431374-2431391|NC_020089.1_2695470-2695453|NC_020089.1_2805799-2805816|NC_020089.1_3160201-3160184|NC_020089.1_3160783-3160766|NC_020089.1_3161020-3161003|NC_020089.1_3735832-3735849|NC_020089.1_3736798-3736815|NC_020089.1_3737915-3737932|NC_020089.1_3737960-3737977|NC_020089.1_3738914-3738931|NC_020089.1_3941705-3941688|NC_020089.1_3942308-3942291|NC_020089.1_132478-132461|NC_020089.1_151004-150987|NC_020089.1_334031-334048|NC_020089.1_334607-334624|NC_020089.1_335450-335467|NC_020089.1_337024-337041|NC_020089.1_337210-337227|NC_020089.1_338425-338442|NC_020089.1_338866-338883|NC_020089.1_365347-365330|NC_020089.1_365851-365834|NC_020089.1_627680-627663|NC_020089.1_676908-676925|NC_020089.1_678699-678716|NC_020089.1_678885-678902|NC_020089.1_841629-841612|NC_020089.1_845228-845211|NC_020089.1_932920-932937|NC_020089.1_973011-973028|NC_020089.1_1096689-1096672|NC_020089.1_1193357-1193374|NC_020089.1_1193654-1193671|NC_020089.1_1194047-1194064|NC_020089.1_1194584-1194601|NC_020089.1_1195672-1195689|NC_020089.1_1195771-1195788|NC_020089.1_1196503-1196520|NC_020089.1_1218017-1218000|NC_020089.1_1222275-1222258|NC_020089.1_1222812-1222795|NC_020089.1_1223430-1223413|NC_020089.1_1389638-1389655|NC_020089.1_1390673-1390690|NC_020089.1_1494548-1494565|NC_020089.1_1494809-1494826|NC_020089.1_1495124-1495141|NC_020089.1_1578181-1578198|NC_020089.1_1636649-1636666|NC_020089.1_1636778-1636795|NC_020089.1_1636970-1636987|NC_020089.1_1637018-1637035|NC_020089.1_1637627-1637644|NC_020089.1_1637675-1637692|NC_020089.1_1638317-1638334|NC_020089.1_1639085-1639102|NC_020089.1_1641256-1641273|NC_020089.1_1641919-1641936|NC_020089.1_1642675-1642692|NC_020089.1_1661286-1661303|NC_020089.1_1860749-1860766|NC_020089.1_1994490-1994507|NC_020089.1_2065724-2065741|NC_020089.1_2065898-2065915|NC_020089.1_2366768-2366785|NC_020089.1_2395589-2395606|NC_020089.1_2431653-2431670|NC_020089.1_2695566-2695549|NC_020089.1_2695698-2695681|NC_020089.1_2796588-2796605|NC_020089.1_2803267-2803284|NC_020089.1_2803693-2803710|NC_020089.1_2803711-2803728|NC_020089.1_2804170-2804187|NC_020089.1_2805205-2805222|NC_020089.1_2805646-2805663|NC_020089.1_3053869-3053852|NC_020089.1_3736444-3736461|NC_020089.1_3736660-3736677|NC_020089.1_3737035-3737052|NC_020089.1_3737297-3737314|NC_020089.1_3737375-3737392|NC_020089.1_3737843-3737860|NC_020089.1_3738839-3738856|NC_020089.1_3740165-3740182|NC_020089.1_3740201-3740218|NC_020089.1_3778628-3778611|NC_020089.1_3799833-3799816|NC_020089.1_3800406-3800389|NC_020089.1_3800637-3800620|NC_020089.1_3934866-3934849|NC_020089.1_3935055-3935038|NC_020089.1_3935280-3935263|NC_020089.1_3935709-3935692|NC_020089.1_3936258-3936241|NC_020089.1_3936345-3936328|NC_020089.1_3936540-3936523|NC_020089.1_3940424-3940407|NC_020089.1_3941399-3941382|NC_020089.1_3941723-3941706|NC_020089.1_3942002-3941985|NC_020089.1_3942326-3942309|NC_020089.1_3942977-3942960|NC_020089.1_3943574-3943557|NC_020089.1_3943943-3943926|NC_020089.1_3944171-3944154|NC_020089.1_3944597-3944580|NC_020089.1_3944987-3944970|NC_020089.1_3949240-3949223|NC_020089.1_3949657-3949640|NC_020089.1_3949750-3949733|NC_020089.1_3950002-3949985|NC_020089.1_3950095-3950078|NC_020089.1_3950347-3950330|NC_020089.1_3950440-3950423|NC_020089.1_3950692-3950675|NC_020089.1_3950785-3950768|NC_020089.1_3951037-3951020|NC_020089.1_3951130-3951113|NC_020089.1_3951382-3951365|NC_020089.1_3951925-3951908|NC_020089.1_3952165-3952148|NC_020089.1_3953080-3953063|NC_020089.1_3953146-3953129|NC_020089.1_3954109-3954092|NC_020089.1_3956910-3956893|NC_020089.1_4040876-4040893|NC_020089.1_4046731-4046748|NC_020089.1_338998-339015|NC_020089.1_341887-341904|NC_020089.1_336035-336052	NA:NA	18,2	18	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|61aa|up_1|NC_020089.1_333380_333563_-,NA	NA|561aa|up_9|NC_020089.1_324787_326470_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_8|NC_020089.1_326486_328682_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_7|NC_020089.1_328795_329929_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_6|NC_020089.1_329925_330546_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_5|NC_020089.1_330642_331224_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_4|NC_020089.1_331153_331879_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_3|NC_020089.1_331968_332889_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_2|NC_020089.1_332928_333357_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|61aa|up_1|NC_020089.1_333380_333563_-	NA	NA|936aa|up_0|NC_020089.1_333657_336465_-	pfam00934, PE, PE family	NA|537aa|down_0|NC_020089.1_342607_344218_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_1|NC_020089.1_344241_345150_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_2|NC_020089.1_345373_347269_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_3|NC_020089.1_347265_348882_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_4|NC_020089.1_348878_352871_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_5|NC_020089.1_352867_353176_+	pfam00934, PE, PE family	NA|514aa|down_6|NC_020089.1_353178_354720_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_7|NC_020089.1_354768_355062_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_8|NC_020089.1_355091_355382_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|down_9|NC_020089.1_355392_356280_+	pfam14011, ESX-1_EspG, EspG family
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	3	369404-370102	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	369692-369733|369767-369799	NC_020089.1_377693-377734|NC_020089.1_376508-376540	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NC_020089.1_366416_366719_+,NA|161aa|down_1|NC_020089.1_379482_379965_-,NA|410aa|down_5|NC_020089.1_382081_383311_+	NA|262aa|up_9|NC_020089.1_361414_362200_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NC_020089.1_362188_362992_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NC_020089.1_363001_364399_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|491aa|up_6|NC_020089.1_364577_366050_+	pfam00934, PE, PE family	NA|76aa|up_5|NC_020089.1_366192_366420_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NC_020089.1_366416_366719_+	NA	NA|74aa|up_3|NC_020089.1_366766_366988_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NC_020089.1_366984_367410_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NC_020089.1_367545_368178_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NC_020089.1_368174_369083_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NC_020089.1_378823_379495_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NC_020089.1_379482_379965_-	NA	NA|239aa|down_2|NC_020089.1_380022_380739_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NC_020089.1_380840_381497_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NC_020089.1_381566_382058_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NC_020089.1_382081_383311_+	NA	NA|621aa|down_6|NC_020089.1_383465_385328_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NC_020089.1_385399_385786_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|212aa|down_8|NC_020089.1_385788_386424_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NC_020089.1_386511_387396_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	4	635488-635625	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	635506-635523|635506-635523|635590-635607	NC_020089.1_22466-22483|NC_020089.1_1416606-1416623|NC_020089.1_976554-976571	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_6|NC_020089.1_626241_626403_-,NA|478aa|up_0|NC_020089.1_632503_633937_-,NA|450aa|down_2|NC_020089.1_637260_638610_-,NA|93aa|down_5|NC_020089.1_640140_640419_-	NA|530aa|up_9|NC_020089.1_622425_624015_+	COG1333, ResB, ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]	NA|325aa|up_8|NC_020089.1_624011_624986_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_7|NC_020089.1_625027_626245_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_6|NC_020089.1_626241_626403_-	NA	NA|106aa|up_5|NC_020089.1_626449_626767_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|336aa|up_4|NC_020089.1_628678_629686_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NC_020089.1_629767_630646_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NC_020089.1_630662_631457_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NC_020089.1_631453_632494_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NC_020089.1_632503_633937_-	NA	NA|211aa|down_0|NC_020089.1_635948_636581_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NC_020089.1_636577_637240_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NC_020089.1_637260_638610_-	NA	NA|381aa|down_3|NC_020089.1_638621_639764_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NC_020089.1_639778_640081_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NC_020089.1_640140_640419_-	NA	NA|418aa|down_6|NC_020089.1_640415_641669_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NC_020089.1_641788_642175_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NC_020089.1_642237_643122_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|301aa|down_9|NC_020089.1_643217_644120_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	5	696237-696313	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|136aa|up_9|NC_020089.1_682132_682540_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_8|NC_020089.1_682599_683286_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_7|NC_020089.1_683439_686073_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_6|NC_020089.1_686095_688483_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_5|NC_020089.1_688620_689343_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_4|NC_020089.1_689339_690137_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_3|NC_020089.1_690138_691026_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_2|NC_020089.1_691031_692246_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_1|NC_020089.1_693269_694715_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|479aa|up_0|NC_020089.1_694711_696148_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NC_020089.1_697448_698999_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NC_020089.1_699050_699443_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NC_020089.1_699439_699697_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NC_020089.1_699879_701115_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NC_020089.1_701365_701779_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NC_020089.1_701775_702012_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NC_020089.1_702115_702622_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NC_020089.1_702735_703206_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NC_020089.1_703249_704011_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NC_020089.1_704067_704379_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	6	845104-845226	3	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGGCCCCGCCGGCCCCGCCGGTGCCG--------GCG	42	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|71aa|up_9|NC_020089.1_834499_834712_+,NA|176aa|up_6|NC_020089.1_836574_837102_+,NA|186aa|up_4|NC_020089.1_838684_839242_-,NA|46aa|down_2|NC_020089.1_846355_846493_-,NA|82aa|down_3|NC_020089.1_846651_846897_+,NA|242aa|down_9|NC_020089.1_855359_856085_-	NA|71aa|up_9|NC_020089.1_834499_834712_+	NA	NA|183aa|up_8|NC_020089.1_834860_835409_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|269aa|up_7|NC_020089.1_835653_836460_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|176aa|up_6|NC_020089.1_836574_837102_+	NA	NA|176aa|up_5|NC_020089.1_837779_838307_+	pfam00934, PE, PE family	NA|186aa|up_4|NC_020089.1_838684_839242_-	NA	NA|169aa|up_3|NC_020089.1_839238_839745_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_2|NC_020089.1_839857_840004_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_1|NC_020089.1_839952_840480_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|784aa|up_0|NC_020089.1_840499_842851_+	pfam00934, PE, PE family	NA|86aa|down_0|NC_020089.1_845565_845823_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NC_020089.1_845846_846275_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_2|NC_020089.1_846355_846493_-	NA	NA|82aa|down_3|NC_020089.1_846651_846897_+	NA	NA|295aa|down_4|NC_020089.1_846965_847850_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_5|NC_020089.1_847860_849033_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_6|NC_020089.1_849039_850572_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_7|NC_020089.1_850777_852532_+	pfam00934, PE, PE family	NA|646aa|down_8|NC_020089.1_852721_854659_-	pfam00823, PPE, PPE family	NA|242aa|down_9|NC_020089.1_855359_856085_-	NA
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	7	929881-930828	3	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGCGGNNCCGGCGG	21	1	3	930664-930699|930664-930699|930664-930699	NC_020089.1_679334-679299|NC_020089.1_1218315-1218350|NC_020089.1_2431691-2431656	NA	19	19	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NC_020089.1_934829_935381_-,NA|81aa|down_8|NC_020089.1_940844_941087_+	NA|685aa|up_9|NC_020089.1_917517_919572_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NC_020089.1_919737_920907_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NC_020089.1_920994_922011_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NC_020089.1_922172_922814_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NC_020089.1_922894_923950_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NC_020089.1_924001_924394_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NC_020089.1_924451_924874_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NC_020089.1_924835_925126_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NC_020089.1_925230_926136_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NC_020089.1_926154_926970_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|880aa|down_0|NC_020089.1_931097_933737_-	pfam00934, PE, PE family	NA|215aa|down_1|NC_020089.1_934204_934849_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NC_020089.1_934829_935381_-	NA	NA|218aa|down_3|NC_020089.1_935530_936184_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_4|NC_020089.1_936254_937283_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_5|NC_020089.1_937971_938742_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_6|NC_020089.1_938828_939641_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_7|NC_020089.1_939708_940569_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_8|NC_020089.1_940844_941087_+	NA	NA|431aa|down_9|NC_020089.1_941363_942656_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	8	967886-968137	4	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGGTGGTGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGT	63	1	1	968059-968114	NC_020089.1_968187-968242	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NC_020089.1_965984_966185_+,NA	NA|158aa|up_9|NC_020089.1_956508_956982_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|398aa|up_8|NC_020089.1_956978_958172_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|404aa|up_7|NC_020089.1_958328_959540_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|721aa|up_6|NC_020089.1_959544_961707_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|543aa|up_5|NC_020089.1_961774_963403_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|757aa|up_4|NC_020089.1_963646_965917_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|67aa|up_3|NC_020089.1_965984_966185_+	NA	NA|168aa|up_2|NC_020089.1_966194_966698_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|161aa|up_1|NC_020089.1_966694_967177_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|142aa|up_0|NC_020089.1_967173_967599_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|93aa|down_0|NC_020089.1_969287_969566_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|361aa|down_1|NC_020089.1_969569_970652_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|130aa|down_2|NC_020089.1_970648_971038_-	PRK11770, PRK11770, YccF domain-containing protein	NA|136aa|down_3|NC_020089.1_971202_971610_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|610aa|down_4|NC_020089.1_971728_973558_-	pfam00934, PE, PE family	NA|651aa|down_5|NC_020089.1_973818_975771_+	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|387aa|down_6|NC_020089.1_975859_977020_-	COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|down_7|NC_020089.1_977119_977608_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|549aa|down_8|NC_020089.1_977604_979251_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|263aa|down_9|NC_020089.1_979388_980177_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	9	1196004-1196117	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGTTGCCCGACAGCCAGCCGGC	27	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NC_020089.1_1185384_1187016_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NC_020089.1_1187091_1188156_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NC_020089.1_1188208_1188682_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NC_020089.1_1188715_1189579_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NC_020089.1_1189583_1190441_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NC_020089.1_1190441_1191524_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NC_020089.1_1191604_1192024_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NC_020089.1_1192135_1192702_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NC_020089.1_1192698_1193094_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NC_020089.1_1193121_1195125_-	pfam00934, PE, PE family	NA|588aa|down_0|NC_020089.1_1197405_1199169_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NC_020089.1_1199165_1199939_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NC_020089.1_1199950_1200988_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NC_020089.1_1201174_1202011_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NC_020089.1_1202126_1202978_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NC_020089.1_1203051_1204269_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NC_020089.1_1204321_1205266_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NC_020089.1_1205662_1206556_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NC_020089.1_1206612_1208007_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NC_020089.1_1208208_1208931_+	pfam06271, RDD, RDD family
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	10	1577089-1578161	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1577289-1577310	NC_020089.1_1216959-1216938	NA	15	15	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|191aa|up_7|NC_020089.1_1568597_1569170_+,NA	NA|103aa|up_9|NC_020089.1_1566367_1566676_+	pfam00934, PE, PE family	NA|540aa|up_8|NC_020089.1_1566672_1568292_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|191aa|up_7|NC_020089.1_1568597_1569170_+	NA	NA|209aa|up_6|NC_020089.1_1569304_1569931_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NC_020089.1_1569996_1570329_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NC_020089.1_1570344_1571601_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NC_020089.1_1571728_1572940_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NC_020089.1_1573012_1574491_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NC_020089.1_1574487_1575873_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NC_020089.1_1575950_1576985_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NC_020089.1_1579014_1579416_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NC_020089.1_1579412_1579670_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NC_020089.1_1579752_1580712_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NC_020089.1_1580736_1581699_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NC_020089.1_1581832_1582435_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NC_020089.1_1582515_1584483_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NC_020089.1_1584500_1585325_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NC_020089.1_1585493_1585976_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NC_020089.1_1586047_1586872_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NC_020089.1_1587068_1588007_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	11	2092062-2092316	4	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2092143-2092160|2092143-2092160|2092233-2092250	NC_020089.1_403989-403972|NC_020089.1_611559-611542|NC_020089.1_3446082-3446065	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NC_020089.1_2091421_2091685_-,NA	NA|165aa|up_9|NC_020089.1_2077827_2078322_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NC_020089.1_2078613_2079291_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NC_020089.1_2079649_2082475_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NC_020089.1_2082701_2083562_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NC_020089.1_2083602_2084469_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NC_020089.1_2084473_2086360_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NC_020089.1_2086375_2088409_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NC_020089.1_2088528_2090754_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NC_020089.1_2091029_2091425_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NC_020089.1_2091421_2091685_-	NA	NA|346aa|down_0|NC_020089.1_2093453_2094491_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NC_020089.1_2094490_2095858_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NC_020089.1_2096031_2097471_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NC_020089.1_2097503_2098955_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NC_020089.1_2098984_2099935_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NC_020089.1_2099949_2100366_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NC_020089.1_2100643_2101066_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NC_020089.1_2101114_2101417_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NC_020089.1_2101413_2101728_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NC_020089.1_2101727_2103461_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	12	2173274-2173493	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_2|NC_020089.1_2163758_2164166_-,NA|127aa|down_5|NC_020089.1_2181009_2181390_-	NA|216aa|up_9|NC_020089.1_2157072_2157720_-	pfam14081, DUF4262, Domain of unknown function (DUF4262)	NA|741aa|up_8|NC_020089.1_2157726_2159949_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_7|NC_020089.1_2159986_2160430_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_6|NC_020089.1_2160543_2161137_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_5|NC_020089.1_2161219_2161825_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_4|NC_020089.1_2161924_2162929_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_3|NC_020089.1_2163028_2163781_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_2|NC_020089.1_2163758_2164166_-	NA	NA|767aa|up_1|NC_020089.1_2164300_2166601_+	PLN02892, PLN02892, isocitrate lyase	NA|1667aa|up_0|NC_020089.1_2166770_2171771_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NC_020089.1_2175520_2175985_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NC_020089.1_2176082_2176946_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NC_020089.1_2176983_2178255_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NC_020089.1_2178526_2179642_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NC_020089.1_2179632_2180973_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NC_020089.1_2181009_2181390_-	NA	NA|621aa|down_6|NC_020089.1_2181546_2183409_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NC_020089.1_2183416_2183896_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NC_020089.1_2184132_2184906_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|215aa|down_9|NC_020089.1_2185699_2186344_-	TIGR03085, TIGR03085, TIGR03085 family protein
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	13	3118581-3121030	5,6,5,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-B,Type III-A,Type III-C	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	30,33,33,30	33	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NC_020089.1_3111860_3112115_-,NA|135aa|up_7|NC_020089.1_3112262_3112667_+,NA|64aa|up_6|NC_020089.1_3112663_3112855_+,NA|86aa|up_4|NC_020089.1_3114441_3114699_+,NA|104aa|up_3|NC_020089.1_3114803_3115115_+,NA|203aa|up_2|NC_020089.1_3115534_3116143_+,NA	NA|92aa|up_9|NC_020089.1_3111409_3111685_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NC_020089.1_3111860_3112115_-	NA	NA|135aa|up_7|NC_020089.1_3112262_3112667_+	NA	NA|64aa|up_6|NC_020089.1_3112663_3112855_+	NA	NA|385aa|up_5|NC_020089.1_3113053_3114208_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NC_020089.1_3114441_3114699_+	NA	NA|104aa|up_3|NC_020089.1_3114803_3115115_+	NA	NA|203aa|up_2|NC_020089.1_3115534_3116143_+	NA	NA|470aa|up_1|NC_020089.1_3116213_3117623_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NC_020089.1_3117619_3118432_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	cas2|114aa|down_0|NC_020089.1_3121078_3121420_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NC_020089.1_3121420_3122437_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NC_020089.1_3122449_3123598_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NC_020089.1_3123693_3124821_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NC_020089.1_3124817_3125726_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NC_020089.1_3125706_3126417_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NC_020089.1_3126426_3126801_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NC_020089.1_3126797_3129236_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NC_020089.1_3129232_3129955_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NC_020089.1_3130354_3130900_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	14	3739418-3740097	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTNGCCGCC	23	0	0	NA	NA	NA	9	9	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|94aa|up_0|NC_020089.1_3736721_3737003_+,NA|96aa|down_4|NC_020089.1_3754138_3754426_-,NA|87aa|down_8|NC_020089.1_3767534_3767795_-	NA|290aa|up_9|NC_020089.1_3722221_3723091_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_8|NC_020089.1_3723111_3724122_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_7|NC_020089.1_3724394_3725039_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_6|NC_020089.1_3725105_3726335_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_5|NC_020089.1_3726617_3727967_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_4|NC_020089.1_3727978_3729118_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_3|NC_020089.1_3729114_3729846_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|1948aa|up_2|NC_020089.1_3729854_3735698_-	pfam00823, PPE, PPE family	NA|339aa|up_1|NC_020089.1_3735746_3736763_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|94aa|up_0|NC_020089.1_3736721_3737003_+	NA	NA|86aa|down_0|NC_020089.1_3742008_3742266_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NC_020089.1_3742521_3751995_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NC_020089.1_3752620_3753067_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NC_020089.1_3753103_3753844_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NC_020089.1_3754138_3754426_-	NA	NA|265aa|down_5|NC_020089.1_3766144_3766939_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_6|NC_020089.1_3767020_3767392_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_7|NC_020089.1_3767289_3767508_-	pfam01565, FAD_binding_4, FAD binding domain	NA|87aa|down_8|NC_020089.1_3767534_3767795_-	NA	NA|130aa|down_9|NC_020089.1_3767909_3768299_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	15	3845435-3845524	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCAGGCGTTGGGCTGGCTGCCGAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|77aa|up_7|NC_020089.1_3838829_3839060_+,NA|121aa|up_6|NC_020089.1_3839163_3839526_-,NA|73aa|up_2|NC_020089.1_3843500_3843719_-,NA|121aa|down_0|NC_020089.1_3846509_3846872_-,NA|52aa|down_2|NC_020089.1_3848713_3848869_-,NA|52aa|down_3|NC_020089.1_3848893_3849049_-,NA|238aa|down_6|NC_020089.1_3853084_3853798_-	NA|169aa|up_9|NC_020089.1_3837140_3837647_-	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|409aa|up_8|NC_020089.1_3837643_3838870_-	PRK00053, alr, alanine racemase; Reviewed	NA|77aa|up_7|NC_020089.1_3838829_3839060_+	NA	NA|121aa|up_6|NC_020089.1_3839163_3839526_-	NA	NA|177aa|up_5|NC_020089.1_3839688_3840219_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|177aa|up_4|NC_020089.1_3840485_3841016_+	pfam00823, PPE, PPE family	NA|725aa|up_3|NC_020089.1_3841333_3843508_-	COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]	NA|73aa|up_2|NC_020089.1_3843500_3843719_-	NA	NA|100aa|up_1|NC_020089.1_3844213_3844513_+	pfam00934, PE, PE family	NA|181aa|up_0|NC_020089.1_3844598_3845141_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|121aa|down_0|NC_020089.1_3846509_3846872_-	NA	NA|179aa|down_1|NC_020089.1_3847034_3847571_+	pfam00823, PPE, PPE family	NA|52aa|down_2|NC_020089.1_3848713_3848869_-	NA	NA|52aa|down_3|NC_020089.1_3848893_3849049_-	NA	NA|461aa|down_4|NC_020089.1_3850241_3851624_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|474aa|down_5|NC_020089.1_3851661_3853083_-	pfam01256, Carb_kinase, Carbohydrate kinase	NA|238aa|down_6|NC_020089.1_3853084_3853798_-	NA	NA|285aa|down_7|NC_020089.1_3853808_3854663_-	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|625aa|down_8|NC_020089.1_3854884_3856759_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|159aa|down_9|NC_020089.1_3856780_3857257_+	pfam10708, DUF2510, Protein of unknown function (DUF2510)
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	16	3957610-3959377	7	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CANCGGCGGNNNCGGCGGCNNNGGCGGNNNCGGCGGC	37	2	10	3958211-3958245|3958211-3958245|3958211-3958245|3958211-3958245|3959108-3959133|3959108-3959133|3959108-3959133|3959108-3959133|3959108-3959133|3959108-3959133	NC_020089.1_3956531-3956565|NC_020089.1_3957260-3957294|NC_020089.1_3957602-3957636|NC_020089.1_3940666-3940700|NC_020089.1_3949647-3949672|NC_020089.1_3949992-3950017|NC_020089.1_3950337-3950362|NC_020089.1_3950682-3950707|NC_020089.1_3951027-3951052|NC_020089.1_3951372-3951397	NA	22	22	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|280aa|down_2|NC_020089.1_3962691_3963531_+	NA|255aa|up_9|NC_020089.1_3927855_3928620_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|318aa|up_8|NC_020089.1_3928845_3929799_-	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|64aa|up_7|NC_020089.1_3929823_3930015_-	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|401aa|up_6|NC_020089.1_3930229_3931432_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|374aa|up_5|NC_020089.1_3931456_3932578_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|1388aa|up_4|NC_020089.1_3934327_3938491_+	pfam00934, PE, PE family	NA|2109aa|up_3|NC_020089.1_3938781_3945108_+	pfam00934, PE, PE family	NA|516aa|up_2|NC_020089.1_3945274_3946822_-	PRK07586, PRK07586, acetolactate synthase large subunit	NA|279aa|up_1|NC_020089.1_3946818_3947655_-	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|219aa|up_0|NC_020089.1_3954535_3955192_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|549aa|down_0|NC_020089.1_3960084_3961731_-	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|264aa|down_1|NC_020089.1_3961804_3962596_+	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|280aa|down_2|NC_020089.1_3962691_3963531_+	NA	NA|399aa|down_3|NC_020089.1_3963585_3964782_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|237aa|down_4|NC_020089.1_3964810_3965521_+	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|348aa|down_5|NC_020089.1_3965585_3966629_-	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|304aa|down_6|NC_020089.1_3966781_3967693_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|355aa|down_7|NC_020089.1_3967708_3968773_+	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|344aa|down_8|NC_020089.1_3970015_3971047_+	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|175aa|down_9|NC_020089.1_3971060_3971585_-	COG0663, PaaY, Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
GCF_000331445.1_ASM33144v1	NC_020089	Mycobacterium tuberculosis 7199-99, complete genome	17	4120160-4120248	8	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NC_020089.1_4110746_4111517_-,NA|233aa|up_0|NC_020089.1_4119264_4119963_-,NA|126aa|down_6|NC_020089.1_4125483_4125861_+	NA|388aa|up_9|NC_020089.1_4106417_4107581_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NC_020089.1_4107577_4108630_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NC_020089.1_4109128_4109992_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NC_020089.1_4110746_4111517_-	NA	NA|549aa|up_5|NC_020089.1_4111513_4113160_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NC_020089.1_4113156_4114020_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NC_020089.1_4114012_4114939_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NC_020089.1_4114940_4116566_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NC_020089.1_4117273_4119229_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NC_020089.1_4119264_4119963_-	NA	NA|173aa|down_0|NC_020089.1_4120308_4120827_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NC_020089.1_4120827_4121811_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NC_020089.1_4121803_4122997_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NC_020089.1_4123002_4123824_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NC_020089.1_4123955_4124639_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NC_020089.1_4124638_4125376_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NC_020089.1_4125483_4125861_+	NA	NA|225aa|down_7|NC_020089.1_4125959_4126634_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NC_020089.1_4126737_4127532_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NC_020089.1_4127538_4127994_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
