The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP032527	Bacillus megaterium NCT-2 chromosome, complete genome	5193616	20684	31141	5193616		Bacillus_phage(33.33%)	8	NA	NA
WP_013059909.1|20684_22049_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	52.1	1.5e-121
WP_013085553.1|22236_23523_+	adenylosuccinate synthase	NA	A0A2P1EKE7	Megavirus	35.9	2.1e-69
WP_013085552.1|24292_25000_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	42.0	2.4e-46
WP_013085551.1|25006_26914_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	36.4	3.8e-38
WP_016765986.1|26904_28272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016765985.1|28258_29038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_013059903.1|29056_29851_+	MBL fold metallo-hydrolase	NA	A0A2I7SDH3	Paenibacillus_phage	36.0	5.4e-39
WP_034669064.1|29908_31141_+	PDZ domain-containing protein	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	30.1	8.1e-10
>prophage 2
NZ_CP032527	Bacillus megaterium NCT-2 chromosome, complete genome	5193616	890149	899423	5193616		Bacillus_phage(33.33%)	8	NA	NA
WP_016765493.1|890149_890866_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	42.2	1.7e-47
WP_129542263.1|890865_892638_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	26.0	6.4e-24
WP_016765491.1|892779_893469_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q8SBN9	Clostridium_phage	42.1	5.2e-14
WP_016765490.1|893502_895077_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	30.2	1.0e-28
WP_013084915.1|895672_896248_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_013059046.1|896326_896575_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	54.1	3.6e-18
WP_016765489.1|896832_897882_+	ATP-dependent DNA helicase RecQ	NA	NA	NA	NA	NA
WP_016765488.1|897905_899423_+	ATP-dependent DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	31.1	1.7e-54
>prophage 3
NZ_CP032527	Bacillus megaterium NCT-2 chromosome, complete genome	5193616	2987098	2995310	5193616		Bacillus_virus(66.67%)	7	NA	NA
WP_016763994.1|2987098_2989510_-	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	36.9	1.6e-17
WP_013056909.1|2990249_2990687_-	RNA-binding protein S1	NA	NA	NA	NA	NA
WP_013083029.1|2990868_2991690_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	64.1	1.1e-92
WP_016763993.1|2991724_2992405_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	42.8	1.9e-40
WP_016763992.1|2992420_2993890_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	48.4	1.1e-114
WP_016763991.1|2993913_2994462_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	43.9	2.3e-33
WP_016763990.1|2994533_2995310_-	NUDIX hydrolase	NA	A0A0E3JJF3	Streptomyces_phage	41.9	6.7e-10
>prophage 4
NZ_CP032527	Bacillus megaterium NCT-2 chromosome, complete genome	5193616	4925088	4933350	5193616		Synechococcus_phage(50.0%)	8	NA	NA
WP_013055043.1|4925088_4925667_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	1.3e-29
WP_013081441.1|4925663_4926701_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F0L1	Synechococcus_phage	45.6	1.7e-69
WP_013055041.1|4926727_4928143_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	4.3e-55
WP_013055040.1|4928118_4930350_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.2e-157
WP_013055039.1|4930333_4931020_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_013055038.1|4931016_4931268_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_013055037.1|4931275_4931983_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3FGF0	Synechococcus_phage	40.2	1.2e-42
WP_016762771.1|4932057_4933350_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.5	5.9e-19
>prophage 1
NZ_CP032528	Bacillus megaterium NCT-2 plasmid pNCT2_1, complete sequence	132087	46677	107650	132087	transposase	Bacillus_phage(33.33%)	58	NA	NA
WP_129542382.1|46677_47385_-|transposase	IS6 family transposase	transposase	A0A077SL39	Escherichia_phage	50.7	4.4e-53
WP_016766728.1|47496_48462_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_016766726.1|49683_50028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016766724.1|50277_50736_+	SMI1/KNR4 family protein	NA	NA	NA	NA	NA
WP_016766722.1|51166_52147_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	26.9	3.4e-11
WP_016766720.1|52991_53240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016766718.1|53948_54800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016766717.1|54914_55094_-	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	50.8	1.7e-09
WP_016766716.1|55204_55558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016766715.1|55967_56108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016766713.1|57162_57807_+	DsbA family protein	NA	NA	NA	NA	NA
WP_016766712.1|57858_58962_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_016766710.1|59337_59580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016766709.1|59770_60658_-	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA	NA
WP_016766708.1|60787_62203_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_129542383.1|62336_62519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097812912.1|62828_63014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047933096.1|63516_63726_+	alpha/beta-type small acid-soluble spore protein	NA	A0A1P8CX76	Bacillus_phage	69.8	3.7e-16
WP_016766667.1|64159_64459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016766666.1|64471_65605_+	DNA segregation ATPase	NA	Q0H250	Geobacillus_phage	34.1	6.2e-57
WP_016766665.1|65601_66297_+	hypothetical protein	NA	Q0H249	Geobacillus_phage	38.3	5.0e-33
WP_016766664.1|66586_66907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026106771.1|67402_67975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016766661.1|69678_69903_-	helix-turn-helix transcriptional regulator	NA	B3RH35	Bacillus_virus	43.3	1.2e-09
WP_129542384.1|70703_71597_-	sigma-70 family RNA polymerase sigma factor	NA	Q0SPI3	Clostridium_phage	29.1	1.4e-11
WP_129542385.1|71803_72592_-	plasmid stabilization protein	NA	NA	NA	NA	NA
WP_129542386.1|72701_74003_-	replication protein	NA	NA	NA	NA	NA
WP_016766237.1|74491_75067_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_051045975.1|75861_76401_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	65.4	1.4e-59
WP_016766236.1|76393_76567_-|transposase	transposase	transposase	A0A1P8CWP5	Bacillus_phage	64.3	8.3e-14
WP_129542387.1|77614_77872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098366853.1|79067_79505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_057242257.1|79552_79828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129542388.1|80577_82377_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	37.7	3.2e-87
WP_129542406.1|82572_83856_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_129542389.1|83913_84948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129542390.1|85061_86015_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_129542391.1|86007_86646_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_053215328.1|87084_87645_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_047932938.1|87754_87973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047932937.1|88026_88338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_034655538.1|88534_88816_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	A0A2I7SC16	Paenibacillus_phage	70.8	2.8e-11
WP_047932933.1|88956_89436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129542392.1|90112_90676_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA	NA
WP_129542393.1|91531_91759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129542394.1|92159_92366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129542395.1|92754_93936_+|transposase	IS256-like element ISBame1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	27.0	8.5e-33
WP_129542396.1|94378_95056_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_129542397.1|95185_95767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129542398.1|96048_96747_+	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_129542407.1|97521_98076_-	HPP family protein	NA	NA	NA	NA	NA
WP_129542399.1|99529_100477_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_129542400.1|100847_101129_-	exonuclease	NA	NA	NA	NA	NA
WP_043977717.1|101756_101984_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_129542401.1|102581_103802_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_129542402.1|104371_104899_+	adenylate kinase DNA topology modulator	NA	NA	NA	NA	NA
WP_129542298.1|105081_106232_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.3	1.6e-47
WP_087947471.1|106302_107650_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	61.9	4.8e-88
>prophage 1
NZ_CP032531	Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence	119712	22147	89533	119712	integrase,transposase,coat	Catovirus(23.08%)	59	34557:34573	76669:76685
WP_098622081.1|22147_22681_+|coat	spore coat protein X	coat	NA	NA	NA	NA
WP_098622082.1|22718_23147_+|coat	spore coat protein	coat	NA	NA	NA	NA
WP_074684248.1|23525_23960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129542454.1|24337_25624_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_074684250.1|25620_25839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_098979947.1|25855_26395_-	DUF2642 domain-containing protein	NA	NA	NA	NA	NA
WP_129542455.1|26681_27401_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_098979948.1|27719_28790_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_129542456.1|28834_30082_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_098979950.1|30661_31387_-	glycosyltransferase	NA	A0A1V0S9B9	Catovirus	26.4	2.5e-06
WP_129542457.1|31746_32661_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A222YY99	Synechococcus_phage	25.4	3.3e-24
WP_129542458.1|32885_34103_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_129542459.1|34234_35146_+	NAD-dependent epimerase/dehydratase family protein	NA	M4QPK0	Synechococcus_phage	34.0	2.4e-35
34557:34573	attL	TTGATAAAATTATATTT	NA	NA	NA	NA
WP_129542460.1|35348_35972_+	peptidase	NA	A0A1V0SAM1	Catovirus	32.0	1.4e-05
WP_129542461.1|36358_36556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129542462.1|36793_37618_-	SDR family oxidoreductase	NA	A0A2P1ELT6	Moumouvirus	34.2	1.7e-32
WP_029319771.1|37618_38605_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	32.3	1.1e-44
WP_129542463.1|38597_39689_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A2P1ELS7	Moumouvirus	47.8	3.0e-93
WP_097813204.1|40108_40804_-	peptidase	NA	NA	NA	NA	NA
WP_129542464.1|41168_42329_-	peptidase S8	NA	A0A1B0T6A2	Bacillus_phage	51.2	2.2e-97
WP_029319780.1|43348_43630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097813202.1|44228_44804_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_098476442.1|45872_46805_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B1P793	Bacillus_phage	29.2	1.8e-30
WP_129542465.1|46980_48363_-	replication initiation protein	NA	A0A1V0E006	Clostridioides_phage	28.3	1.2e-09
WP_129542466.1|49338_50235_+	transcriptional regulator	NA	A0A288WFX2	Bacillus_phage	29.9	5.1e-22
WP_097813199.1|50438_50729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129542467.1|50986_51253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129542468.1|51711_52569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098278583.1|54648_55341_-	peptidase	NA	NA	NA	NA	NA
WP_098278604.1|55683_55902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098321926.1|56891_57923_-	YheC/YheD family protein	NA	NA	NA	NA	NA
WP_029319807.1|58067_59297_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_029319809.1|59544_59868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_098278586.1|60428_61178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029319813.1|61325_61538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074684411.1|62650_62902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074684410.1|63864_63957_+	YjcZ family sporulation protein	NA	NA	NA	NA	NA
WP_081715117.1|64397_64502_-	YjcZ family sporulation protein	NA	NA	NA	NA	NA
WP_074684408.1|64819_65029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129542469.1|65304_66021_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_097812780.1|66093_66351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029319823.1|67154_67361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029319824.1|67787_68030_+	spore germination protein	NA	NA	NA	NA	NA
WP_029319826.1|68051_68279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098278590.1|69142_69706_-	DUF3967 domain-containing protein	NA	NA	NA	NA	NA
WP_129542480.1|72240_74070_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.5	6.1e-30
WP_129542470.1|75270_75501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129542471.1|76141_76498_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_129542472.1|76707_76980_-|coat	spore coat protein	coat	NA	NA	NA	NA
76669:76685	attR	TTGATAAAATTATATTT	NA	NA	NA	NA
WP_081715120.1|77294_77540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098278593.1|78369_79050_-	peptidase	NA	NA	NA	NA	NA
WP_098400043.1|81273_82011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129542473.1|82272_83559_+|transposase	IS110 family transposase	transposase	A0A1X9I5Z0	Streptococcus_phage	24.0	3.3e-14
WP_029319874.1|84135_84594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029319876.1|84727_86224_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_129542474.1|86551_87505_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_129542475.1|87921_88128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074684415.1|88430_88643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_116299326.1|89158_89533_-|coat	spore coat protein X	coat	NA	NA	NA	NA
>prophage 1
NZ_CP032534	Bacillus megaterium NCT-2 plasmid pNCT2_6, complete sequence	57761	34737	43751	57761	transposase	Bacillus_phage(40.0%)	12	NA	NA
WP_016763689.1|34737_35643_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.3	1.4e-19
WP_100229232.1|35916_36096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_088568182.1|36287_36659_+	hypothetical protein	NA	A0A1P8CWP4	Bacillus_phage	43.4	2.4e-18
WP_026106738.1|36672_37005_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	36.7	3.1e-09
WP_016766152.1|37270_37456_+	hypothetical protein	NA	A0A1P8CWV7	Bacillus_phage	61.4	3.8e-12
WP_016766153.1|37637_38039_-	transcriptional regulator Spx	NA	M1PLC0	Streptococcus_phage	30.3	2.7e-07
WP_013084404.1|38601_38811_+	alpha/beta-type small acid-soluble spore protein	NA	A0A1P8CX76	Bacillus_phage	71.4	3.4e-17
WP_129542564.1|38947_40075_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	47.2	7.5e-87
WP_129542553.1|40633_40933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129542565.1|40945_42079_+	chromosome partitioning protein ParA	NA	Q0H250	Geobacillus_phage	34.4	8.1e-57
WP_129542566.1|42075_42771_+	hypothetical protein	NA	Q0H249	Geobacillus_phage	38.0	2.0e-34
WP_129542518.1|42863_43751_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.7	1.2e-42
