The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	80032	89205	4634161	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|80032_80980_+	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
WP_015405841.1|80963_81695_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|81675_81783_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|81842_82574_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|82798_84484_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|84480_85200_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|85246_85714_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001528371.1|85770_86301_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_015405842.1|86472_86931_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	4.9e-53
WP_001528465.1|87171_89205_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	6.1e-55
>prophage 2
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	164699	175206	4634161		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001528434.1|164699_166103_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	2.3e-21
WP_000981469.1|166280_167174_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_015405857.1|167550_168636_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	2.7e-102
WP_015405858.1|168635_169535_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	6.7e-30
WP_015405859.1|169582_170461_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.7e-108
WP_000973709.1|170461_171013_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
WP_001528498.1|171018_171993_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648785.1|172008_172782_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_001528452.1|172786_173866_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	2.3e-16
WP_000126349.1|173892_175206_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 3
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	272963	280198	4634161		Morganella_phage(33.33%)	8	NA	NA
WP_001529332.1|272963_273383_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_001529335.1|273385_274654_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	1.4e-227
WP_000208509.1|275108_275321_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131163.1|275331_275520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015405879.1|275779_276958_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.0	1.1e-109
WP_000107437.1|277607_277919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001529334.1|277998_278694_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	28.2	2.1e-07
WP_001157312.1|278767_280198_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.5	3.5e-105
>prophage 4
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	383038	392405	4634161	integrase,tail	Salmonella_phage(44.44%)	13	377482:377496	388371:388385
377482:377496	attL	AATGACGTGTGAACG	NA	NA	NA	NA
WP_000856225.1|383038_383269_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
WP_000168393.1|383406_383781_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_001529229.1|383781_384657_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000722368.1|384673_385027_+	YebY family protein	NA	NA	NA	NA	NA
WP_001529245.1|385400_386480_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	53.2	5.1e-101
WP_015405889.1|386476_387583_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	Q9QF34	Lambdoid_phage	65.5	4.8e-54
WP_001529234.1|387613_387901_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	95.1	1.9e-39
WP_001529209.1|387897_388431_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
388371:388385	attR	AATGACGTGTGAACG	NA	NA	NA	NA
WP_000789530.1|388687_388855_-	lytic enzyme	NA	NA	NA	NA	NA
WP_000348550.1|389157_389649_+	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	56.2	7.6e-44
WP_001529243.1|390201_391539_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	52.1	9.9e-78
WP_001529204.1|391510_391831_+	hypothetical protein	NA	A0A0M4QWS3	Salmonella_phage	79.2	2.9e-44
WP_015405891.1|391820_392405_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	80.1	2.2e-82
>prophage 5
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	1034520	1042796	4634161		Escherichia_phage(42.86%)	9	NA	NA
WP_000497451.1|1034520_1034760_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
WP_015405983.1|1034977_1035142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001529135.1|1035639_1036449_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|1036521_1036899_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|1037046_1037589_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001529122.1|1037772_1038501_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.0	4.6e-61
WP_000275697.1|1038517_1038931_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	3.2e-19
WP_001529189.1|1039974_1041099_-	type III secretion system effector SopF	NA	NA	NA	NA	NA
WP_000444508.1|1041545_1042796_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
>prophage 6
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	1197057	1238974	4634161	plate,integrase,tail,holin,terminase	Escherichia_phage(37.14%)	53	1206020:1206033	1239161:1239174
WP_000594485.1|1197057_1197579_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	73.3	7.8e-63
WP_015405994.1|1197963_1198230_+	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	85.2	1.4e-36
WP_024138909.1|1198245_1198437_-	DUF2767 family protein	NA	A0A0M4R5C3	Salmonella_phage	97.7	5.8e-16
WP_024138910.1|1198545_1198980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015405997.1|1199335_1199929_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	86.9	1.5e-91
WP_015405998.1|1199918_1200743_-	macro domain-containing protein	NA	A0A0M4QWS3	Salmonella_phage	90.5	1.7e-141
WP_015405999.1|1200739_1202449_-|tail	tail fiber protein	tail	A0A0U2SAV1	Escherichia_phage	65.2	2.2e-90
WP_015406000.1|1202445_1203072_-	hypothetical protein	NA	A0A0U2RK03	Escherichia_phage	70.7	1.6e-91
WP_001281710.1|1203055_1204282_-|plate	baseplate J/gp47 family protein	plate	A0A0U2RJZ0	Escherichia_phage	63.6	8.3e-148
WP_001261467.1|1204278_1204611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015406001.1|1204607_1205324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015406002.1|1205320_1206373_-	hypothetical protein	NA	NA	NA	NA	NA
1206020:1206033	attL	CTGCCAGTTCCCCA	NA	NA	NA	NA
WP_015406003.1|1206372_1206648_-	hypothetical protein	NA	A0A0U2JGJ3	Escherichia_phage	31.8	1.0e-05
WP_015406004.1|1206644_1207361_-	hypothetical protein	NA	A0A0U2JGI7	Escherichia_phage	39.1	1.7e-28
WP_015406005.1|1207360_1209352_-	hypothetical protein	NA	A0A2R3UAN6	Myoviridae_environmental_samples	35.8	4.8e-20
WP_015406007.1|1209475_1210063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024138911.1|1210062_1210500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015406009.1|1210503_1211898_-	hypothetical protein	NA	A0A0U2KD19	Escherichia_phage	36.6	2.3e-69
WP_001139603.1|1211903_1212842_-	hypothetical protein	NA	A0A0U2SH76	Escherichia_phage	39.2	4.2e-51
WP_031603730.1|1212825_1213236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001114359.1|1213253_1213679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000780865.1|1213691_1214177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015406010.1|1214243_1215275_-	DUF2184 domain-containing protein	NA	A0A0U2QQI2	Escherichia_phage	45.5	1.9e-73
WP_024138912.1|1215292_1216165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015406012.1|1216185_1217760_-	NUDIX hydrolase	NA	Q6UJ14	Burkholderia_virus	48.6	1.3e-20
WP_010835735.1|1217760_1218636_-	hypothetical protein	NA	A0A0U2I1R8	Escherichia_phage	45.8	1.2e-55
WP_015406013.1|1218607_1220038_-	DUF1073 domain-containing protein	NA	A0A0U2S5X9	Escherichia_phage	38.1	2.0e-92
WP_015406014.1|1220037_1221309_-	hypothetical protein	NA	H9YPE5	environmental_Halophage	30.9	1.5e-14
WP_015406015.1|1221298_1222273_-|terminase	terminase small subunit	terminase	C5IHM0	Burkholderia_virus	38.9	8.6e-31
WP_015406016.1|1222358_1222628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015406017.1|1222698_1223238_-	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
WP_015406018.1|1223234_1223849_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	92.2	1.8e-106
WP_015406019.1|1223851_1224199_-|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	79.4	1.1e-44
WP_001533567.1|1224468_1225155_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	98.2	1.1e-130
WP_015406020.1|1225818_1226112_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	64.2	4.0e-32
WP_001643788.1|1226108_1226705_-	DUF1367 family protein	NA	H9C173	Pectobacterium_phage	74.2	6.5e-82
WP_000474096.1|1226773_1226965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001129735.1|1227148_1227487_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
WP_015406022.1|1227653_1228256_-	adenine methylase	NA	G9L699	Escherichia_phage	87.3	1.3e-98
WP_000918617.1|1228248_1228497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015406023.1|1228500_1229181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015406024.1|1229218_1230607_-	replicative DNA helicase	NA	Q76H51	Enterobacteria_phage	47.1	2.0e-105
WP_024138914.1|1230603_1231653_-	hypothetical protein	NA	A0A1W6JNI1	Staphylococcus_phage	38.5	1.7e-32
WP_015406026.1|1231658_1231883_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	46.1	2.8e-09
WP_024138915.1|1231905_1232352_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	50.4	9.4e-25
WP_023972394.1|1232757_1233213_+	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	51.7	4.6e-35
WP_000387662.1|1233898_1234222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001192832.1|1234229_1234475_+	hypothetical protein	NA	A0A1B1W282	Salmonella_phage	53.8	3.5e-13
WP_015406028.1|1234504_1236778_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	34.9	3.6e-104
WP_015406029.1|1236774_1237329_+	siphovirus Gp157 family protein	NA	H9C156	Pectobacterium_phage	59.3	7.5e-48
WP_000916251.1|1237331_1237514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001643772.1|1237726_1237951_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_015406030.1|1237951_1238974_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	53.2	7.8e-91
1239161:1239174	attR	CTGCCAGTTCCCCA	NA	NA	NA	NA
>prophage 7
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	1893658	1901951	4634161	integrase	Bacteriophage(33.33%)	9	1886556:1886569	1904951:1904964
1886556:1886569	attL	GGCGCGTTCGGCCT	NA	NA	NA	NA
WP_001527607.1|1893658_1893928_+	VRR-NUC domain-containing protein	NA	B6SD64	Bacteriophage	65.9	1.5e-25
WP_015406094.1|1893930_1894644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001527373.1|1894682_1896074_+	DEAD/DEAH box helicase	NA	Q3LZN8	Bacteriophage	73.5	1.6e-211
WP_024136027.1|1896082_1896259_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_001046411.1|1896265_1896733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000772661.1|1896733_1897906_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	49.0	5.0e-110
WP_000893217.1|1898250_1899501_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	48.2	4.7e-98
WP_001285275.1|1899512_1900616_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
WP_001043667.1|1900898_1901951_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.8	2.6e-113
1904951:1904964	attR	GGCGCGTTCGGCCT	NA	NA	NA	NA
>prophage 8
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	4078940	4084752	4634161		Enterobacteria_phage(100.0%)	8	NA	NA
WP_015406334.1|4078940_4081274_-	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	83.2	0.0e+00
WP_000743149.1|4081288_4081609_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_001216599.1|4081605_4081833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000980356.1|4081829_4082387_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	66.7	9.3e-30
WP_000546674.1|4082383_4082650_-	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
WP_000194694.1|4083189_4083927_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	65.3	3.1e-81
WP_000984211.1|4083923_4084169_+	ogr/Delta-like zinc finger family protein	NA	Q7M294	Enterobacteria_phage	76.5	6.3e-31
WP_000210079.1|4084185_4084752_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.2	3.8e-55
>prophage 9
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	4087841	4217693	4634161	plate,integrase,tail,lysis,holin,capsid,terminase,tRNA,head,portal	Salmonella_phage(68.69%)	139	4105111:4105127	4187681:4187697
WP_000124716.1|4087841_4089035_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.6	2.6e-106
WP_000834152.1|4089377_4090589_-	hypothetical protein	NA	E5G6K9	Salmonella_phage	47.5	6.3e-108
WP_001528621.1|4090585_4091611_-|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	93.3	1.2e-192
WP_000616881.1|4091612_4092245_-	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	89.5	3.5e-102
WP_000102529.1|4092364_4092613_+	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	67.9	6.4e-23
WP_000460863.1|4092645_4093155_+	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	92.9	1.3e-83
WP_000794278.1|4093241_4093517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001528723.1|4093601_4093796_+	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	84.1	5.3e-25
WP_000963476.1|4093759_4094101_+	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	84.1	6.0e-48
WP_001178763.1|4094168_4094396_+	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	64.0	8.1e-17
WP_015406335.1|4094395_4094623_+	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	65.3	2.7e-20
WP_001528700.1|4094619_4095477_+	DNA adenine methylase	NA	A0A1S6L011	Salmonella_phage	93.7	3.5e-153
WP_015406336.1|4095467_4097879_+	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	97.0	0.0e+00
WP_015406337.1|4098034_4098223_+	hypothetical protein	NA	A0A1S6L006	Salmonella_phage	98.4	1.0e-25
WP_015406338.1|4098234_4098471_+	DinI family protein	NA	A0A1S6L014	Salmonella_phage	95.7	1.9e-29
WP_015406339.1|4098587_4099265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001655629.1|4099606_4100713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024138933.1|4100725_4101160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015406341.1|4101159_4101825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001655631.1|4101894_4102929_-|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	94.8	3.3e-182
WP_001098431.1|4102928_4104695_-|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.7	0.0e+00
WP_001655635.1|4104837_4105671_+|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	91.0	8.2e-123
4105111:4105127	attL	CTGGTGGAACTGGTGAA	NA	NA	NA	NA
WP_001655636.1|4105687_4106770_+|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	96.3	8.5e-189
WP_015406342.1|4106773_4107427_+|terminase	terminase endonuclease subunit	terminase	E5G6M7	Salmonella_phage	95.9	1.3e-110
WP_000673541.1|4107522_4107987_+|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	96.8	7.9e-83
WP_000868184.1|4107986_4108190_+|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000171565.1|4108193_4108409_+	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
WP_001069919.1|4108389_4108899_+	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	98.8	2.2e-94
WP_015406343.1|4108903_4109299_+	hypothetical protein	NA	A0A1S6KZZ2	Salmonella_phage	100.0	6.5e-62
WP_001655639.1|4109280_4109706_+|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	99.3	3.8e-68
WP_001039961.1|4109801_4110233_+|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	99.3	1.1e-75
WP_001655640.1|4110225_4110672_+	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	90.4	1.3e-66
WP_000993749.1|4110740_4111319_+|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.5	3.9e-108
WP_000177403.1|4111315_4111675_+	GPW/gp25 family protein	NA	E5G6N7	Salmonella_phage	98.3	8.0e-59
WP_001655641.1|4111661_4112570_+|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	99.3	3.5e-159
WP_001086807.1|4112562_4113168_+|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	98.0	4.1e-116
WP_015406344.1|4113164_4114970_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	76.7	5.9e-227
WP_015406345.1|4114969_4115545_+|tail	tail fiber assembly protein	tail	E5G6P1	Salmonella_phage	97.9	2.4e-105
WP_072209236.1|4116142_4116391_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	69.6	2.9e-23
WP_015406347.1|4116424_4116649_+	helix-turn-helix domain-containing protein	NA	E5G6P5	Salmonella_phage	97.3	1.2e-33
WP_015406348.1|4116751_4117924_+|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	5.7e-223
WP_001207652.1|4117933_4118449_+|tail	phage major tail tube protein	tail	A0A1S6L002	Salmonella_phage	98.8	7.9e-92
WP_001280967.1|4118503_4118806_+|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	99.0	9.4e-45
WP_000763317.1|4118820_4118940_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	97.4	8.8e-15
WP_015406349.1|4118932_4121740_+|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	99.5	0.0e+00
WP_000980409.1|4121736_4122222_+|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.2	8.3e-67
WP_001657019.1|4122218_4123319_+	phage late control D family protein	NA	A0A1S6KZZ5	Salmonella_phage	98.6	4.5e-193
WP_000972388.1|4123385_4123604_+	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	76.4	8.3e-27
WP_001668082.1|4123888_4124479_+	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	75.9	4.4e-46
WP_072101562.1|4124983_4126147_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_001528595.1|4126154_4128335_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	9.9e-19
WP_001528538.1|4128331_4129741_-	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_015406351.1|4129805_4141280_-	biofilm-associated protein BapA	NA	NA	NA	NA	NA
WP_001518569.1|4141895_4142378_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_000242604.1|4142527_4143004_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_015406352.1|4142993_4143284_+	RnfH family protein	NA	NA	NA	NA	NA
WP_001203445.1|4143448_4143787_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001528556.1|4143935_4145597_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_015406353.1|4145682_4146561_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_001518875.1|4146683_4147274_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001528622.1|4147308_4147914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127908301.1|4148043_4149330_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001537507.1|4149349_4150141_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_000460052.1|4150306_4151668_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000256453.1|4151920_4152169_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000043266.1|4152187_4152736_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000469807.1|4152780_4153548_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000065257.1|4153588_4153936_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000972010.1|4154080_4154299_-	DNA-binding transcriptional regulator	NA	Q37973	Salmonella_virus	100.0	1.2e-38
WP_015406356.1|4155539_4156025_-|tail	phage tail protein	tail	O80317	Escherichia_phage	92.5	5.0e-80
WP_015406357.1|4156038_4158480_-|tail	phage tail tape measure protein	tail	A0A0M3UL85	Salmonella_phage	81.1	1.2e-286
WP_139772331.1|4158472_4158628_-|tail	GpE family phage tail protein	tail	Q6K1G8	Salmonella_virus	96.1	3.3e-22
WP_015406359.1|4158624_4158960_-|tail	phage tail assembly protein	tail	S4TTB2	Salmonella_phage	98.2	1.5e-51
WP_015406360.1|4159022_4159541_-|tail	phage major tail tube protein	tail	S4TNZ0	Salmonella_phage	98.3	1.6e-92
WP_015406361.1|4159556_4160744_-|tail	phage tail sheath protein	tail	Q6K1H0	Salmonella_virus	99.7	2.6e-223
WP_015406362.1|4160878_4161280_-|tail	tail assembly chaperone	tail	A0A1B0V844	Salmonella_phage	81.8	1.9e-56
WP_015406363.1|4161286_4162927_-|tail	phage tail protein	tail	Q37842	Escherichia_phage	61.1	4.6e-101
WP_015406364.1|4162933_4163467_-|tail	phage tail protein I	tail	Q37841	Escherichia_phage	92.6	2.7e-95
WP_015406365.1|4163459_4164368_-|plate	baseplate assembly protein	plate	Q37840	Escherichia_phage	96.0	5.2e-155
WP_015406366.1|4164374_4164722_-	GPW/gp25 family protein	NA	O80315	Escherichia_phage	99.1	7.2e-57
WP_015406367.1|4164718_4165360_-|plate	phage baseplate assembly protein V	plate	A0A0M4S6F6	Salmonella_phage	95.8	4.2e-111
WP_015406368.1|4165428_4165878_-	phage virion morphogenesis protein	NA	S4TP59	Salmonella_phage	94.0	4.8e-69
WP_001169074.1|4165870_4166338_-|tail	phage tail protein	tail	S4TTA5	Salmonella_phage	100.0	1.1e-84
WP_001394645.1|4166300_4166474_-	hypothetical protein	NA	S4TNY4	Salmonella_phage	98.2	2.8e-25
WP_015406369.1|4166445_4166859_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A0M4R2N5	Salmonella_phage	96.4	3.7e-44
WP_001144116.1|4166855_4167353_-	glycoside hydrolase family 104 protein	NA	S4TUB1	Salmonella_phage	99.4	1.2e-92
WP_000134660.1|4167339_4167636_-|holin	holin	holin	Q6K1I2	Salmonella_virus	100.0	5.8e-47
WP_000868400.1|4167639_4167843_-|tail	tail protein X	tail	A0A0M3ULF4	Salmonella_phage	100.0	3.6e-32
WP_000214255.1|4167842_4168349_-|head	head completion/stabilization protein	head	S4TNY1	Salmonella_phage	100.0	1.3e-91
WP_015406370.1|4168442_4169192_-|terminase	terminase endonuclease subunit	terminase	Q6K1I5	Salmonella_virus	98.0	9.9e-128
WP_015406371.1|4169195_4170263_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M4R4W2	Salmonella_phage	99.4	9.9e-198
WP_015406372.1|4170339_4171194_-|capsid	GPO family capsid scaffolding protein	capsid	Q01088	Escherichia_phage	95.1	1.5e-151
WP_015406373.1|4171359_4173132_+|terminase	terminase ATPase subunit family protein	terminase	S4TT96	Salmonella_phage	98.8	0.0e+00
WP_015406374.1|4173128_4173875_+	hypothetical protein	NA	Q6K1I9	Salmonella_virus	96.4	7.3e-139
WP_000044288.1|4173871_4174894_+|portal	phage portal protein	portal	Q6K1J0	Salmonella_virus	99.7	1.5e-198
WP_000718722.1|4174914_4175115_+	hypothetical protein	NA	A0A0M5M1G4	Salmonella_phage	78.1	7.4e-06
WP_001161211.1|4175327_4176269_+	hypothetical protein	NA	Q2P9W7	Enterobacteria_phage	90.4	2.2e-164
WP_153260300.1|4176369_4176543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001222154.1|4176747_4176981_-	DinI family protein	NA	A0A0M4S6H1	Salmonella_phage	98.7	8.0e-36
WP_000232650.1|4176984_4177167_-	hypothetical protein	NA	A0A0M5M1G5	Salmonella_phage	100.0	4.1e-27
WP_015406376.1|4177284_4179510_-	replication endonuclease	NA	A0A0M3ULG0	Salmonella_phage	97.3	0.0e+00
WP_015406377.1|4179500_4179782_-	DUF3850 domain-containing protein	NA	A0A0P0I3U9	Klebsiella_phage	52.6	2.0e-12
WP_000058620.1|4179778_4180051_-	DUF5405 family protein	NA	A0A218M4I8	Erwinia_phage	78.9	2.1e-35
WP_043942892.1|4180047_4180617_-	DNA polymerase III subunit epsilon	NA	A0A1S6L012	Salmonella_phage	69.9	1.8e-68
WP_000752599.1|4180628_4180856_-	TraR/DksA family transcriptional regulator	NA	A0A0M4S5Q7	Salmonella_phage	91.7	2.0e-31
WP_001246237.1|4180855_4181083_-	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	100.0	6.8e-32
WP_015406379.1|4181152_4181353_-	hypothetical protein	NA	A0A0M5M7U3	Salmonella_phage	98.5	6.7e-31
WP_015406380.1|4181339_4181567_-	DUF2724 domain-containing protein	NA	A0A0M4RTI3	Salmonella_phage	98.7	3.2e-37
WP_015406381.1|4181574_4182084_-	phage regulatory CII family protein	NA	A0A0M4QWN1	Salmonella_phage	97.6	3.1e-88
WP_001278194.1|4182116_4182488_-	hypothetical protein	NA	A0A0M4R4X7	Salmonella_phage	99.2	1.4e-61
WP_015406382.1|4182601_4183447_+	phage repressor protein CI	NA	Q6K1G0	Salmonella_virus	74.4	4.4e-116
WP_015406383.1|4183455_4183794_+	DUF2511 domain-containing protein	NA	A0A0M3ULF8	Salmonella_phage	72.1	1.4e-41
WP_015406384.1|4183818_4184868_+|integrase	site-specific integrase	integrase	A0A0M4S6G4	Salmonella_phage	90.0	2.0e-187
WP_015406385.1|4185119_4186340_-	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	2.2e-07
WP_001212375.1|4186332_4186851_-	YfiR family protein	NA	NA	NA	NA	NA
WP_001168062.1|4187290_4188361_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
4187681:4187697	attR	CTGGTGGAACTGGTGAA	NA	NA	NA	NA
WP_001528543.1|4188370_4189492_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_000210991.1|4189549_4190458_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000200080.1|4190418_4191579_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_010989056.1|4191678_4191726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000178449.1|4191829_4192168_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_000197660.1|4192439_4193177_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000079130.1|4193308_4194289_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000992639.1|4194285_4195017_+	polyphenol oxidase	NA	NA	NA	NA	NA
WP_001235092.1|4195146_4197720_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
WP_000985653.1|4203493_4203949_+	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	50.0	3.0e-34
WP_000807820.1|4204052_4205354_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.6	9.1e-44
WP_001264473.1|4205350_4205674_-	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000949286.1|4205718_4207074_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_015406386.1|4207188_4209849_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_001528681.1|4209902_4210583_-	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_001098732.1|4210655_4211075_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000997366.1|4211278_4212316_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_000179978.1|4212431_4213121_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000627811.1|4213439_4213823_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000188414.1|4213884_4214472_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000365861.1|4214574_4215474_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000219174.1|4215491_4216826_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_000083343.1|4216955_4217693_+|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
>prophage 10
NC_020307	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992, complete sequence	4634161	4222911	4264886	4634161	protease,integrase,tail,lysis,terminase,tRNA,portal	Salmonella_phage(57.58%)	49	4221852:4221867	4269135:4269150
4221852:4221867	attL	AACGCGGAAATCACCA	NA	NA	NA	NA
WP_001007935.1|4222911_4224141_+|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.1	6.4e-233
WP_014344516.1|4224118_4224403_-	excisionase Xis	NA	H6WRW8	Salmonella_phage	87.2	1.1e-42
WP_015406388.1|4224443_4224683_-	DUF4060 family protein	NA	H6WRW9	Salmonella_phage	96.2	3.7e-36
WP_001528555.1|4224688_4225558_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4R347	Salmonella_phage	95.2	5.7e-159
WP_001528544.1|4225554_4226235_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	99.1	1.0e-131
WP_001528698.1|4226231_4227017_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	98.9	4.8e-149
WP_001528639.1|4227022_4227319_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	98.0	5.8e-47
WP_001528648.1|4227404_4227647_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	1.7e-12
WP_001528699.1|4227899_4228106_+	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	66.2	4.8e-16
WP_015406389.1|4228132_4228504_-	ASCH domain-containing protein	NA	Q6SE87	Lactobacillus_prophage	50.0	2.5e-31
WP_001528740.1|4228481_4229543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015406390.1|4229612_4230008_-	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	72.5	3.5e-47
WP_000992434.1|4230112_4230349_+	helix-turn-helix domain-containing protein	NA	A0A0M4QX15	Salmonella_phage	73.1	9.0e-27
WP_077908559.1|4230314_4230689_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	97.6	1.6e-62
WP_001528571.1|4230780_4231686_+	replication protein	NA	A0A0M5M7Y1	Salmonella_phage	96.0	4.4e-170
WP_001528722.1|4231682_4232384_+	replication protein P	NA	A0A0M3ULE2	Salmonella_phage	99.1	4.2e-128
WP_031619097.1|4232428_4232830_+	ParB/RepB/Spo0J family partition protein	NA	S4TTI6	Salmonella_phage	99.2	1.4e-72
WP_001528574.1|4232826_4233312_+	ead/Ea22-like family protein	NA	S4TNP2	Salmonella_phage	92.9	4.9e-43
WP_000704096.1|4233338_4234331_-	peptidase M85	NA	NA	NA	NA	NA
WP_001217669.1|4234600_4234834_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_031610564.1|4234950_4235199_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	98.8	1.8e-41
WP_015406391.1|4235233_4235836_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	98.5	2.8e-109
WP_000178134.1|4235835_4236042_+	hypothetical protein	NA	H6WRY8	Salmonella_phage	98.5	2.3e-34
WP_001673842.1|4236567_4237059_+|lysis	lysis protein	lysis	S4TNN7	Salmonella_phage	74.2	9.6e-55
WP_000669689.1|4237247_4237649_-	pre-peptidase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000348549.1|4237927_4238419_+	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	57.5	4.5e-44
WP_000147406.1|4238405_4240514_+|terminase	phage terminase large subunit family protein	terminase	Q9EYD1	Enterobacteria_phage	70.4	2.1e-292
WP_015406394.1|4240510_4240717_+	hypothetical protein	NA	A5LH28	Enterobacteria_phage	48.6	1.1e-07
WP_001009891.1|4240713_4242249_+|portal	phage portal protein	portal	K7PHM5	Enterobacterial_phage	63.1	2.8e-177
WP_077906818.1|4242166_4244281_+|protease	ATP-dependent Clp protease proteolytic subunit	protease	K7PGT6	Enterobacteria_phage	72.4	3.4e-274
WP_001528690.1|4244902_4245481_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	93.7	1.7e-98
WP_071530035.1|4245577_4245778_-	PagK	NA	NA	NA	NA	NA
WP_001522456.1|4246414_4249780_+	DUF4765 family protein	NA	A0A0N7KZG3	Stx2-converting_phage	50.5	1.2e-311
WP_000790154.1|4250306_4252106_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_000002559.1|4252122_4253097_+	signal peptidase I	NA	NA	NA	NA	NA
WP_001068341.1|4253370_4254051_+	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	7.4e-21
WP_000102230.1|4254047_4254953_+	GTPase Era	NA	NA	NA	NA	NA
WP_000399380.1|4254964_4255693_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000818972.1|4255704_4256436_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000986043.1|4256435_4256816_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_001196290.1|4256927_4257188_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_001022476.1|4257225_4258152_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	2.3e-09
WP_001276365.1|4258267_4259464_+	OFA family MFS transporter	NA	NA	NA	NA	NA
WP_001528649.1|4259485_4260403_+	oxidoreductase	NA	NA	NA	NA	NA
WP_000995688.1|4260441_4261290_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001048527.1|4261405_4262299_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_000361660.1|4262309_4263671_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_000253558.1|4263674_4264310_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA	NA
WP_001134560.1|4264334_4264886_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	NA	NA	NA	NA
4269135:4269150	attR	TGGTGATTTCCGCGTT	NA	NA	NA	NA
