The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020450	Lactococcus lactis subsp. lactis IO-1, complete genome	2421471	378845	390973	2421471	tRNA	Streptococcus_phage(40.0%)	14	NA	NA
WP_015425840.1|378845_379163_+	thioredoxin family protein	NA	A0A0K2FIM3	Achromobacter_phage	30.4	7.7e-05
WP_015425841.1|379248_379875_+|tRNA	DUF4479 and tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
WP_015425842.1|380036_381377_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015425843.1|381465_381855_+	single-stranded DNA-binding protein	NA	A0A0K0MWE1	Streptococcus_phage	45.8	1.1e-24
WP_003131589.1|381974_382259_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	44.1	3.1e-13
WP_015425845.1|382346_383975_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
WP_003131583.1|384020_384833_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	3.1e-34
WP_015425846.1|385002_386445_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.0	1.4e-32
WP_003131580.1|386437_387139_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
WP_015425847.1|387316_387952_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	65.0	3.1e-74
WP_015425848.1|388084_388945_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	45.5	5.0e-67
WP_015425849.1|388996_389779_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_015425850.1|389771_390098_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_015425851.1|390097_390973_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	65.4	8.7e-99
>prophage 2
NC_020450	Lactococcus lactis subsp. lactis IO-1, complete genome	2421471	992267	1015724	2421471		Staphylococcus_phage(21.43%)	22	NA	NA
WP_015426249.1|992267_992960_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.4	2.7e-31
WP_015426250.1|992952_993888_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_015426251.1|993991_994969_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.0	1.1e-118
WP_015426252.1|995318_997487_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.0	8.6e-257
WP_003130968.1|997622_998045_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.3	2.3e-12
WP_042230256.1|998046_998265_-	redoxin NrdH	NA	A0A1W6JHV4	Lactococcus_phage	47.6	1.3e-11
WP_010905665.1|998438_999080_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_012897614.1|999354_1001289_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.5	1.1e-125
WP_015426254.1|1001492_1002032_+	cysteine hydrolase family protein	NA	NA	NA	NA	NA
WP_003130976.1|1002024_1002858_+	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	3.1e-21
WP_015426255.1|1002854_1003304_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_015426256.1|1003579_1006054_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.5	1.1e-98
WP_015426257.1|1006079_1006985_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_015426258.1|1007454_1008543_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.5	2.4e-50
WP_015426259.1|1008542_1009193_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.4	1.6e-41
WP_015426260.1|1009201_1010398_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	50.8	7.9e-111
WP_015426261.1|1010425_1010890_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	55.7	2.8e-40
WP_012897620.1|1010992_1011445_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_003130995.1|1011506_1012412_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.2	5.4e-11
WP_015426262.1|1012559_1013003_+	divergent PAP2 family protein	NA	NA	NA	NA	NA
WP_015426263.1|1013142_1014765_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_015426264.1|1014767_1015724_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	37.5	4.0e-49
>prophage 3
NC_020450	Lactococcus lactis subsp. lactis IO-1, complete genome	2421471	1716916	1759783	2421471	portal,head,integrase,holin,protease,capsid,tail,terminase	Lactococcus_phage(89.58%)	63	1704107:1704124	1757890:1757907
1704107:1704124	attL	CCATCAGTAAAAACAAGG	NA	NA	NA	NA
WP_014570681.1|1716916_1717117_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	93.9	1.4e-28
WP_170275335.1|1718319_1718463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042230494.1|1718537_1719419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015426784.1|1719789_1720194_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	49.6	3.7e-28
WP_015426785.1|1720286_1721627_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1P8BMS7	Lactococcus_phage	81.9	5.4e-209
WP_042230496.1|1721623_1721848_-|holin	holin	holin	A0A1P8BL93	Lactococcus_phage	97.3	1.2e-33
WP_012897995.1|1721861_1722083_-	hemolysin XhlA family protein	NA	A0A191KBQ1	Streptococcus_virus	65.3	1.5e-20
WP_015426786.1|1722100_1723174_-	hypothetical protein	NA	A0A059NTA1	Lactococcus_phage	84.4	2.3e-29
WP_162838863.1|1723173_1723311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015426787.1|1723307_1725845_-	hypothetical protein	NA	A0A059NT86	Lactococcus_phage	92.2	0.0e+00
WP_015426788.1|1725856_1726222_-	hypothetical protein	NA	A0A059NT91	Lactococcus_phage	98.3	9.3e-63
WP_042230499.1|1726233_1731015_-|tail	tail protein	tail	A0A059NT57	Lactococcus_phage	82.9	0.0e+00
WP_015426790.1|1731046_1731418_-	hypothetical protein	NA	A0A172LN91	Lactococcus_phage	67.5	2.3e-40
WP_015426791.1|1731441_1731852_-	hypothetical protein	NA	A0A182BQ86	Lactococcus_phage	75.0	2.0e-50
WP_015426792.1|1731925_1732357_-|tail	major tail protein	tail	A0A182BQ87	Lactococcus_phage	87.9	2.6e-64
WP_015426793.1|1732369_1732732_-	hypothetical protein	NA	A0A059NT89	Lactococcus_phage	95.8	1.8e-58
WP_015426794.1|1732731_1733280_-	hypothetical protein	NA	A0A182BQ89	Lactococcus_phage	97.8	3.3e-96
WP_015426795.1|1733263_1733611_-	hypothetical protein	NA	A0A059NT74	Lactococcus_phage	82.9	5.2e-47
WP_015426796.1|1733591_1733924_-|head,tail	phage head-tail connector protein	head,tail	A0A059NT99	Lactococcus_phage	99.1	5.0e-55
WP_015426797.1|1733944_1735063_-	Ig-like domain-containing protein	NA	A0A059NT82	Lactococcus_phage	97.4	2.9e-163
WP_015426798.1|1735074_1735731_-	DUF4355 domain-containing protein	NA	A0A182BQ92	Lactococcus_phage	88.1	1.9e-82
WP_015426799.1|1735895_1737002_-|capsid	minor capsid protein	capsid	A0A059NT80	Lactococcus_phage	97.0	1.0e-197
WP_015426800.1|1737006_1737294_-|protease	ribosomal-processing cysteine protease Prp	protease	A0A182BQ95	Lactococcus_phage	96.8	5.6e-47
WP_170275344.1|1737290_1737455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015426801.1|1737411_1738920_-|portal	phage portal protein	portal	A0A182BQ97	Lactococcus_phage	94.5	5.3e-229
WP_042230502.1|1738929_1740213_-|terminase	PBSX family phage terminase large subunit	terminase	A0A1B1UZZ1	Enterococcus_phage	82.6	1.9e-203
WP_042230504.1|1740205_1740658_-|terminase	terminase small subunit	terminase	D7RWC4	Brochothrix_phage	41.1	1.3e-18
WP_014024904.1|1740943_1741366_-	DUF722 domain-containing protein	NA	A0A182BQA1	Lactococcus_phage	100.0	2.7e-58
WP_015426807.1|1742296_1742506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042230506.1|1742554_1742710_-	hypothetical protein	NA	Q9AZT8	Lactococcus_phage	96.1	2.2e-21
WP_042230508.1|1742706_1742889_-	hypothetical protein	NA	Q9AZZ4	Lactococcus_phage	98.3	1.6e-28
WP_015426809.1|1742885_1743185_-	hypothetical protein	NA	Q9AZZ5	Lactococcus_phage	93.9	1.4e-45
WP_148284416.1|1743231_1743615_-	hypothetical protein	NA	V9VHY9	Lactococcus_phage	83.5	9.4e-58
WP_042230510.1|1743617_1744007_-	hypothetical protein	NA	A0A1P8BKY9	Lactococcus_phage	62.8	3.1e-32
WP_042230512.1|1743999_1744206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148284417.1|1744189_1744450_-	6-O-methylguanine DNA methyltransferase	NA	NA	NA	NA	NA
WP_015426814.1|1744442_1744763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042230514.1|1744755_1744983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042230516.1|1744979_1745174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080619352.1|1745170_1745674_-	DUF1642 domain-containing protein	NA	A0A059NT63	Lactococcus_phage	60.1	1.4e-37
WP_042230518.1|1745750_1745930_-	hypothetical protein	NA	A0A1P8BKQ8	Lactococcus_phage	96.6	7.5e-26
WP_015426816.1|1745938_1746448_-	hypothetical protein	NA	Q9AZU7	Lactococcus_phage	97.3	1.4e-11
WP_015426817.1|1746471_1746888_-	hypothetical protein	NA	A5GZ50	Lactococcus_phage	97.8	1.2e-74
WP_042230520.1|1746900_1747143_-	hypothetical protein	NA	A5GZ49	Lactococcus_phage	98.8	3.0e-41
WP_042230522.1|1747135_1748035_-	phage replisome organizer N-terminal domain-containing protein	NA	A5GZ47	Lactococcus_phage	62.5	9.3e-72
WP_015426819.1|1748159_1748732_-	single-stranded DNA-binding protein	NA	Q0ILF2	Lactococcus_phage	100.0	2.8e-53
WP_015426820.1|1748745_1749237_-	ERF family protein	NA	A0A1P8BMK8	Lactococcus_phage	97.4	9.3e-58
WP_015426821.1|1749245_1749641_-	hypothetical protein	NA	A0A1P8BL23	Lactococcus_phage	99.2	4.2e-69
WP_015426822.1|1749742_1749979_-	DUF1408 domain-containing protein	NA	Q9MC36	Lactococcus_phage	98.7	6.0e-39
WP_042230523.1|1750082_1750517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158414574.1|1750506_1750659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011834775.1|1750813_1751050_-	helix-turn-helix domain-containing protein	NA	A0A059NT59	Lactococcus_phage	100.0	4.3e-37
WP_015426824.1|1751062_1751776_-	phage antirepressor Ant	NA	A0A059NT90	Lactococcus_phage	99.6	3.5e-130
WP_015426825.1|1751785_1752001_-	hypothetical protein	NA	A0A1P8BKX2	Lactococcus_phage	100.0	5.0e-32
WP_042230525.1|1752012_1752243_-	hypothetical protein	NA	Q77NT7	Lactococcus_phage	97.4	5.7e-34
WP_015426827.1|1752396_1752852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042230528.1|1753171_1753690_+	helix-turn-helix domain-containing protein	NA	A0A1B1IMU5	Lactococcus_phage	91.5	1.0e-51
WP_015426829.1|1753699_1754287_+	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	83.0	9.0e-92
WP_015426830.1|1754344_1754926_+	hypothetical protein	NA	A0A182BQD0	Lactococcus_phage	71.2	2.2e-42
WP_042230530.1|1755046_1756180_+|integrase	site-specific integrase	integrase	A0A059NT56	Lactococcus_phage	98.1	9.2e-202
WP_015426832.1|1756374_1757349_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012898240.1|1757360_1758302_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
1757890:1757907	attR	CCATCAGTAAAAACAAGG	NA	NA	NA	NA
WP_042230532.1|1758304_1759783_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.4	4.5e-15
>prophage 4
NC_020450	Lactococcus lactis subsp. lactis IO-1, complete genome	2421471	1847219	1857078	2421471	tRNA	Prochlorococcus_phage(33.33%)	9	NA	NA
WP_003130886.1|1847219_1847981_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.5e-17
WP_003130885.1|1848146_1848956_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.5	7.0e-10
WP_015426897.1|1848989_1849883_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_015426898.1|1849882_1850806_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_015426899.1|1850926_1851778_-	phosphate ABC transporter substrate-binding protein	NA	E3SNT9	Prochlorococcus_phage	27.3	4.2e-05
WP_015426900.1|1852124_1853021_-	phosphate ABC transporter substrate-binding protein	NA	E3SM63	Prochlorococcus_phage	32.4	7.2e-08
WP_003130878.1|1853298_1853766_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	56.6	2.7e-43
WP_042230561.1|1853797_1854355_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_015426902.1|1854459_1857078_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.3	4.2e-64
>prophage 5
NC_020450	Lactococcus lactis subsp. lactis IO-1, complete genome	2421471	1966561	1980712	2421471	capsid,integrase	Lactococcus_phage(81.82%)	17	1960209:1960228	1976454:1976473
1960209:1960228	attL	TTATAATAAATCCAAGGCTT	NA	NA	NA	NA
WP_015426976.1|1966561_1967080_-	HNH endonuclease	NA	Q8LTL4	Lactococcus_phage	95.9	2.2e-97
WP_015426977.1|1967070_1967406_-	sigma-70 family RNA polymerase sigma factor	NA	Q9AZI1	Lactococcus_phage	69.8	2.3e-31
WP_015426979.1|1968183_1969413_-|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	61.6	1.7e-140
WP_015426980.1|1969589_1970168_-	hypothetical protein	NA	Q9AZE4	Lactococcus_phage	97.4	8.5e-103
WP_015426981.1|1970186_1970642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015426982.1|1970902_1972507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015426983.1|1972499_1973078_-	hypothetical protein	NA	Q9AZE6	Lactococcus_phage	93.8	1.2e-88
WP_015426984.1|1973086_1973356_-	hypothetical protein	NA	Q9AZH3	Lactococcus_phage	70.8	3.3e-25
WP_015426985.1|1973352_1973505_-	hypothetical protein	NA	Q9AZH4	Lactococcus_phage	62.0	2.2e-10
WP_015426986.1|1973501_1973654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042230587.1|1973650_1973854_-	DUF1655 domain-containing protein	NA	Q9AZJ4	Lactococcus_phage	92.2	1.0e-26
WP_042230588.1|1974207_1974417_-	helix-turn-helix transcriptional regulator	NA	Q8LTL6	Lactococcus_phage	71.2	3.7e-16
WP_015426989.1|1974546_1975038_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_042230589.1|1975155_1976355_+|integrase	site-specific integrase	integrase	Q9AZI0	Lactococcus_phage	77.4	1.9e-176
WP_015426991.1|1976501_1976945_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
1976454:1976473	attR	TTATAATAAATCCAAGGCTT	NA	NA	NA	NA
WP_015426992.1|1976990_1977572_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_015426993.1|1977889_1980712_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.1	5.0e-305
