The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_020515	Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence	2407846	1202953	1209983	2407846		Synechococcus_phage(50.0%)	6	NA	NA
WP_015432525.1|1202953_1204552_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	48.4	5.9e-69
WP_015432526.1|1204609_1205176_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	30.3	7.5e-19
WP_015432527.1|1205404_1206424_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.9	1.4e-63
WP_015432528.1|1206416_1207898_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.8	5.7e-50
WP_015432529.1|1207987_1208698_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.6	6.2e-47
WP_015432530.1|1208885_1209983_+	histidinol-phosphate transaminase	NA	A0A142C026	Faustovirus	25.8	2.0e-20
>prophage 2
NC_020515	Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence	2407846	1338111	1352806	2407846		Bacteriophage(11.11%)	11	NA	NA
WP_015432625.1|1338111_1340151_-	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	38.6	2.8e-47
WP_025267013.1|1340294_1340834_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.2	2.5e-24
WP_015432627.1|1340923_1342096_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_015432628.1|1342092_1342911_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	30.5	8.9e-21
WP_015432629.1|1342986_1343889_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	48.0	1.2e-66
WP_015432630.1|1343889_1345128_+	multifunctional CCA addition/repair protein	NA	A0A0F6YPT7	Sinorhizobium_phage	50.3	5.7e-96
WP_025328958.1|1345230_1347798_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	34.5	4.5e-127
WP_015432633.1|1348203_1348788_-	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	41.1	3.8e-26
WP_015432634.1|1348796_1349447_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	37.1	2.1e-33
WP_015432635.1|1349530_1350160_+	amino acid transporter	NA	NA	NA	NA	NA
WP_155800264.1|1350301_1352806_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	25.5	1.3e-27
>prophage 3
NC_020515	Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence	2407846	1852002	1903953	2407846	head,tRNA,transposase,tail,plate	Shigella_phage(32.26%)	63	NA	NA
WP_015433104.1|1852002_1853361_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_015433105.1|1853370_1854252_-	DUF535 domain-containing protein	NA	NA	NA	NA	NA
WP_015433106.1|1854441_1855023_-	NapC/NirT family cytochrome c	NA	NA	NA	NA	NA
WP_015433107.1|1855022_1855445_-	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA	NA
WP_015433108.1|1855561_1856437_-	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA	NA
WP_015433109.1|1856436_1857351_-	ferredoxin-type protein NapG	NA	NA	NA	NA	NA
WP_015433110.1|1857513_1859997_-	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA	NA
WP_025266826.1|1860170_1860443_-	chaperone NapD	NA	NA	NA	NA	NA
WP_015433112.1|1860432_1860981_-	ferredoxin-type protein NapF	NA	NA	NA	NA	NA
WP_015433113.1|1861212_1861338_-	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_015433114.1|1861347_1861614_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_015433115.1|1861863_1862544_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_015433116.1|1862698_1864138_-	glycerol-3-phosphate transporter	NA	NA	NA	NA	NA
WP_025289718.1|1864206_1865274_-	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	47.3	8.6e-08
WP_015433118.1|1865519_1867211_+	anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA	NA	NA	NA	NA
WP_015433119.1|1867200_1868475_+	glycerol-3-phosphate dehydrogenase subunit GlpB	NA	NA	NA	NA	NA
WP_015433120.1|1868476_1869754_+	anaerobic glycerol-3-phosphate dehydrogenase subunit C	NA	NA	NA	NA	NA
WP_025328931.1|1870142_1870814_-	transcriptional regulator	NA	A0A2I7S9A5	Vibrio_phage	41.4	1.0e-27
WP_015433123.1|1871003_1871222_+	helix-turn-helix domain-containing protein	NA	A0A2I7S995	Vibrio_phage	56.1	2.8e-14
WP_015433124.1|1871232_1873236_+|transposase	Mu transposase C-terminal domain-containing protein	transposase	M4M9R2	Vibrio_phage	38.9	8.0e-116
WP_015433125.1|1873332_1874253_+	AAA family ATPase	NA	A0A2I7S9C3	Vibrio_phage	44.9	1.2e-66
WP_015433126.1|1874245_1874557_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015433127.1|1874574_1874841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015433128.1|1874830_1875343_+	host-nuclease inhibitor Gam family protein	NA	F6MIJ0	Haemophilus_phage	75.3	1.3e-65
WP_015433130.1|1875530_1875707_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015433131.1|1875712_1875889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015433132.1|1875898_1876324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015433133.1|1876459_1876933_+	regulatory protein GemA	NA	NA	NA	NA	NA
WP_015433134.1|1876929_1877472_+	hypothetical protein	NA	A0A0M3LPP6	Mannheimia_phage	46.2	2.1e-39
WP_015433135.1|1877616_1878048_+	Mor transcription activator	NA	A0A0C4UQZ9	Shigella_phage	42.0	3.8e-23
WP_025328930.1|1878056_1878488_+	DUF4236 domain-containing protein	NA	NA	NA	NA	NA
WP_015433136.1|1878568_1879126_+	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	77.7	7.7e-85
WP_015433137.1|1879115_1879334_+	DUF2644 domain-containing protein	NA	F6MIK0	Haemophilus_phage	86.8	1.7e-24
WP_025328929.1|1879333_1879606_+	DUF2681 domain-containing protein	NA	NA	NA	NA	NA
WP_015433140.1|1879734_1879962_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA	NA
WP_015433141.1|1879961_1880288_+	DUF2730 domain-containing protein	NA	NA	NA	NA	NA
WP_015433142.1|1880290_1880587_+	ribonuclease R	NA	A0A0C4UR00	Shigella_phage	57.9	4.0e-24
WP_015433143.1|1880620_1881190_+	DUF3486 family protein	NA	M4MCR3	Vibrio_phage	45.4	4.5e-40
WP_015433144.1|1881189_1882761_+	Mu-like prophage FluMu protein gp28	NA	A0A2I7S9C5	Vibrio_phage	60.9	3.9e-158
WP_025328928.1|1882764_1884330_+	DUF935 domain-containing protein	NA	A0A0C4UQR8	Shigella_phage	51.3	3.3e-141
WP_015433146.1|1884316_1885636_+|head	phage head morphogenesis protein	head	C9DGN7	Escherichia_phage	40.7	3.6e-88
WP_015433147.1|1885755_1886190_+	phage virion morphogenesis protein	NA	NA	NA	NA	NA
WP_015433148.1|1886420_1887476_+	hypothetical protein	NA	C9DGP0	Escherichia_phage	46.7	2.9e-72
WP_015433149.1|1887475_1888402_+|head	Mu-like prophage major head subunit gpT family protein	head	C9DGP2	Escherichia_phage	51.0	4.1e-83
WP_015433150.1|1888480_1888867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015433151.1|1888866_1889286_+	DUF1320 family protein	NA	NA	NA	NA	NA
WP_025328927.1|1889285_1889840_+	DUF1834 family protein	NA	NA	NA	NA	NA
WP_015433153.1|1889848_1890040_+	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_015433154.1|1890039_1891503_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A0C4UQS0	Shigella_phage	48.6	6.0e-121
WP_015433155.1|1891512_1891866_+|tail	phage tail tube protein	tail	NA	NA	NA	NA
WP_015433156.1|1891868_1892252_+|tail	phage tail assembly protein	tail	C9DGP9	Escherichia_phage	50.4	6.0e-20
WP_015433157.1|1892341_1894249_+	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	30.2	2.1e-41
WP_015433158.1|1894249_1895614_+	DNA circularization protein	NA	A0A0C4UR32	Shigella_phage	28.7	1.0e-37
WP_015433159.1|1895613_1896402_+|tail	tail protein	tail	A0A0C4UQS1	Shigella_phage	38.5	2.4e-47
WP_015433160.1|1896398_1896896_+	bacteriophage Mu P	NA	M4M9L5	Vibrio_phage	37.9	1.1e-13
WP_015433161.1|1896912_1897464_+|plate	phage baseplate assembly protein V	plate	A0A0C4UQZ3	Shigella_phage	42.3	9.8e-32
WP_015433162.1|1897475_1897886_+	phage GP46 family protein	NA	A0A0C4UR04	Shigella_phage	42.1	4.7e-23
WP_015433163.1|1897885_1898953_+|plate	baseplate J/gp47 family protein	plate	A0A0C4UQU9	Shigella_phage	43.1	2.5e-68
WP_015433164.1|1898943_1899510_+	DUF2313 domain-containing protein	NA	A0A2I7S9L6	Vibrio_phage	34.3	3.5e-16
WP_025328926.1|1899509_1901903_+	hypothetical protein	NA	A0A0C4UQS2	Shigella_phage	46.1	1.6e-14
WP_015433166.1|1901903_1902539_+	DUF4376 domain-containing protein	NA	F6MIL9	Haemophilus_phage	50.3	1.8e-45
WP_025328925.1|1902531_1902996_+	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	61.0	1.0e-53
WP_025328924.1|1903119_1903953_+	hypothetical protein	NA	F6MIM2	Haemophilus_phage	77.4	5.7e-124
>prophage 4
NC_020515	Bibersteinia trehalosi USDA-ARS-USMARC-192, complete sequence	2407846	2075340	2080725	2407846		Enterobacteria_phage(50.0%)	7	NA	NA
WP_015433339.1|2075340_2076093_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	2.5e-17
WP_015433340.1|2076095_2076878_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_015433341.1|2076889_2077429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	52.0	6.4e-52
WP_015433342.1|2077425_2078310_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	38.5	1.3e-41
WP_015433343.1|2078309_2079188_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	67.0	1.9e-109
WP_015433344.1|2079196_2080258_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.7	7.8e-102
WP_015433345.1|2080383_2080725_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	48.6	4.6e-24
