The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021106	Nitrosospira lacus strain APG3 chromosome, complete genome	3261088	2075786	2108936	3261088	integrase,plate	Stenotrophomonas_phage(25.0%)	31	2075605:2075623	2097794:2097812
2075605:2075623	attL	ATTCCGGCTCCGGGCACCA	NA	NA	NA	NA
WP_004177989.1|2075786_2076986_+|integrase	tyrosine-type recombinase/integrase	integrase	B7SYF8	Stenotrophomonas_phage	52.2	7.9e-111
WP_040852329.1|2077422_2077704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151898914.1|2077816_2078662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004177982.1|2078761_2078986_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_051049009.1|2078985_2079405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004177979.1|2079401_2080949_+	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_004177978.1|2080945_2081395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004177976.1|2081449_2081695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151898915.1|2081704_2082667_+	hypothetical protein	NA	A9YX04	Burkholderia_phage	44.1	6.7e-52
WP_151898916.1|2082685_2083255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161493787.1|2083251_2083419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151898917.1|2084203_2084653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151899025.1|2084968_2086297_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_040852323.1|2086363_2086999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040852322.1|2087186_2087939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040852318.1|2088187_2089045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040852315.1|2089414_2089996_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	44.1	2.3e-31
WP_004177962.1|2092192_2093266_+|integrase	site-specific integrase	integrase	W5R968	Staphylococcus_phage	24.3	1.7e-08
WP_004177960.1|2093382_2095011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_151898918.1|2095810_2096188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040852306.1|2096568_2097495_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_151898919.1|2099250_2099817_+	hypothetical protein	NA	NA	NA	NA	NA
2097794:2097812	attR	ATTCCGGCTCCGGGCACCA	NA	NA	NA	NA
WP_040852305.1|2100012_2101035_+	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_004177947.1|2101215_2101728_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_004177946.1|2101767_2103261_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_004177943.1|2103355_2103838_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_004177942.1|2104036_2104522_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_004177941.1|2104552_2105398_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_004177939.1|2105390_2105906_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_004177938.1|2106054_2107929_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_004177937.1|2107904_2108936_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
>prophage 2
NZ_CP021106	Nitrosospira lacus strain APG3 chromosome, complete genome	3261088	2297312	2305251	3261088	integrase,transposase	Burkholderia_virus(25.0%)	12	2297414:2297426	2303541:2303553
WP_040852218.1|2297312_2298170_-	ExeA family protein	NA	A4JWN1	Burkholderia_virus	52.5	1.3e-75
2297414:2297426	attL	TCATGCTGACGGC	NA	NA	NA	NA
WP_004177720.1|2298677_2300453_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	54.3	3.6e-168
WP_004177718.1|2300449_2301454_-	hypothetical protein	NA	J9RW58	Pseudomonas_phage	36.0	3.3e-41
WP_004177716.1|2301466_2301781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004177714.1|2301780_2302257_-	hypothetical protein	NA	A4JWN5	Burkholderia_virus	40.4	7.2e-31
WP_004177712.1|2302370_2302604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004177711.1|2302672_2302870_-	DNA-binding protein	NA	Q5ZQZ9	Pseudomonas_phage	77.8	3.7e-18
WP_004177709.1|2302960_2303398_+	helix-turn-helix transcriptional regulator	NA	K4NXA8	Burkholderia_phage	36.1	2.9e-10
WP_040852194.1|2303459_2303999_+	N-acetylmuramoyl-L-alanine amidase	NA	F6MIJ9	Haemophilus_phage	47.1	1.1e-38
2303541:2303553	attR	GCCGTCAGCATGA	NA	NA	NA	NA
WP_161493791.1|2304049_2304211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004177706.1|2304207_2304642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004177705.1|2304744_2305251_+	hypothetical protein	NA	A0A0H4ITF4	Stenotrophomonas_phage	35.1	9.7e-10
>prophage 3
NZ_CP021106	Nitrosospira lacus strain APG3 chromosome, complete genome	3261088	2309331	2323503	3261088	tail	Pseudomonas_phage(25.0%)	16	NA	NA
WP_004177688.1|2309331_2309898_+	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	51.1	7.7e-40
WP_004177686.1|2309894_2311421_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	56.0	2.2e-145
WP_004177684.1|2311422_2312934_+	DUF935 family protein	NA	G8GWE1	Rhodobacter_phage	50.1	1.2e-87
WP_004177683.1|2313054_2313798_+	Phage (Mu-like) virion morphogenesis protein	NA	J9STS2	Pseudomonas_phage	50.9	4.4e-59
WP_004177682.1|2313797_2314346_+	phage virion morphogenesis protein	NA	F8TVC6	EBPR_siphovirus	33.1	2.9e-12
WP_004177680.1|2314405_2315527_+	hypothetical protein	NA	Q6QIB7	Burkholderia_phage	47.9	4.1e-77
WP_004177679.1|2315703_2316075_+	DUF2190 family protein	NA	A0A0S4L3C3	Pseudomonas_phage	46.2	3.9e-16
WP_040852203.1|2316261_2317206_+	hypothetical protein	NA	A0A0S4L2T7	Pseudomonas_phage	55.1	2.6e-85
WP_085922021.1|2317295_2317613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004181391.1|2317621_2318065_+	DUF1320 domain-containing protein	NA	A0A0M3VI88	Ralstonia_phage	41.6	1.9e-17
WP_004181390.1|2318064_2318508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004181389.1|2318504_2318702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004181387.1|2318701_2319628_+	hypothetical protein	NA	G8CLB2	Synechococcus_phage	40.6	1.4e-62
WP_004181385.1|2319657_2319993_+	hypothetical protein	NA	D6PGA9	uncultured_phage	35.5	5.4e-09
WP_004181383.1|2320055_2320349_+	DUF1799 domain-containing protein	NA	NA	NA	NA	NA
WP_004181381.1|2320338_2323503_+|tail	phage tail length tape measure family protein	tail	A0A0K1Y6G1	Rhodobacter_phage	32.0	1.2e-20
>prophage 4
NZ_CP021106	Nitrosospira lacus strain APG3 chromosome, complete genome	3261088	3123132	3136054	3261088		Bacillus_phage(28.57%)	9	NA	NA
WP_085922070.1|3123132_3125952_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.5	5.9e-306
WP_004174359.1|3125971_3127294_+	glycerate kinase	NA	NA	NA	NA	NA
WP_040851103.1|3127443_3128154_+	phosphate regulon transcriptional regulator PhoB	NA	W8CYM9	Bacillus_phage	38.5	3.4e-37
WP_004174361.1|3128191_3129499_+	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	37.8	4.5e-35
WP_004174362.1|3129765_3130323_+	NUDIX hydrolase	NA	E5EYY7	Acinetobacter_phage	36.8	2.9e-07
WP_004174364.1|3130680_3131787_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	33.0	3.4e-23
WP_004174365.1|3131922_3133854_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	49.4	1.7e-147
WP_004174367.1|3133936_3134509_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_004174369.1|3134677_3136054_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	46.6	2.6e-110
