assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000390085.1_ASM39008v1	NC_021200	Mycobacterium avium subsp. paratuberculosis MAP4, complete sequence	1	406313-406403	1	CRISPRCasFinder	no	DinG	DinG,csa3,DEDDh,cas4,WYL,cas3	Type IV-A	CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT	33	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas4,WYL,cas3	NA,NA|153aa|down_3|NC_021200.1_410550_411009_+,NA|96aa|down_4|NC_021200.1_411214_411502_+,NA|71aa|down_7|NC_021200.1_414191_414404_-	NA|336aa|up_9|NC_021200.1_395192_396200_+	PRK13685, PRK13685, hypothetical protein; Provisional	NA|328aa|up_8|NC_021200.1_396218_397202_-	PRK13685, PRK13685, hypothetical protein; Provisional	NA|438aa|up_7|NC_021200.1_397234_398548_-	PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	NA|277aa|up_6|NC_021200.1_398573_399404_-	pfam04185, Phosphoesterase, Phosphoesterase family	NA|258aa|up_5|NC_021200.1_399568_400342_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|272aa|up_4|NC_021200.1_401778_402594_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|219aa|up_3|NC_021200.1_402692_403349_+	pfam01083, Cutinase, Cutinase	NA|401aa|up_2|NC_021200.1_403394_404597_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|393aa|up_1|NC_021200.1_404593_405772_+	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|156aa|up_0|NC_021200.1_405794_406262_-	pfam13772, AIG2_2, AIG2-like family	NA|472aa|down_0|NC_021200.1_406415_407831_+	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|585aa|down_1|NC_021200.1_407887_409642_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|291aa|down_2|NC_021200.1_409638_410511_+	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|153aa|down_3|NC_021200.1_410550_411009_+	NA	NA|96aa|down_4|NC_021200.1_411214_411502_+	NA	NA|379aa|down_5|NC_021200.1_411733_412870_+	pfam00823, PPE, PPE family	NA|379aa|down_6|NC_021200.1_412979_414116_+	pfam00823, PPE, PPE family	NA|71aa|down_7|NC_021200.1_414191_414404_-	NA	NA|118aa|down_8|NC_021200.1_414489_414843_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|306aa|down_9|NC_021200.1_415034_415952_+	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000390085.1_ASM39008v1	NC_021200	Mycobacterium avium subsp. paratuberculosis MAP4, complete sequence	2	932614-932694	2	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas4,WYL,cas3	Orphan	GCCGCCGAAGGCGGGTAGCTGGA	23	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas4,WYL,cas3	NA|80aa|up_3|NC_021200.1_928592_928832_-,NA	NA|141aa|up_9|NC_021200.1_923668_924091_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|138aa|up_8|NC_021200.1_924209_924623_+	pfam06150, ChaB, ChaB	NA|280aa|up_7|NC_021200.1_924713_925553_-	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|191aa|up_6|NC_021200.1_926098_926671_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|313aa|up_5|NC_021200.1_926766_927705_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|232aa|up_4|NC_021200.1_927728_928424_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|80aa|up_3|NC_021200.1_928592_928832_-	NA	NA|266aa|up_2|NC_021200.1_929163_929961_+	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|186aa|up_1|NC_021200.1_929976_930534_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|312aa|up_0|NC_021200.1_930566_931502_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|168aa|down_0|NC_021200.1_932761_933265_+	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|85aa|down_1|NC_021200.1_934124_934379_-	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|408aa|down_2|NC_021200.1_934500_935724_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|408aa|down_3|NC_021200.1_935743_936967_+	pfam02163, Peptidase_M50, Peptidase family M50	NA|389aa|down_4|NC_021200.1_936999_938166_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|285aa|down_5|NC_021200.1_938214_939069_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|606aa|down_6|NC_021200.1_939197_941015_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|196aa|down_7|NC_021200.1_941060_941648_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|286aa|down_8|NC_021200.1_941679_942537_+	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|498aa|down_9|NC_021200.1_942541_944035_+	PRK00784, PRK00784, cobyric acid synthase
GCF_000390085.1_ASM39008v1	NC_021200	Mycobacterium avium subsp. paratuberculosis MAP4, complete sequence	3	1086076-1086156	3	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas4,WYL,cas3	Orphan	CGCTAATGGCGGTGACCCGCTGCGCC	26	1	1	1086102-1086130	NC_021200.1_351207-351179	NA	1	1	Orphan	DinG,csa3,DEDDh,cas4,WYL,cas3	NA,NA|176aa|down_5|NC_021200.1_1091059_1091587_-	NA|642aa|up_9|NC_021200.1_1075809_1077735_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|429aa|up_8|NC_021200.1_1077779_1079066_-	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|206aa|up_7|NC_021200.1_1079067_1079685_-	pfam11452, DUF3000, Protein of unknown function (DUF3000)	NA|274aa|up_6|NC_021200.1_1079812_1080634_-	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein	NA|358aa|up_5|NC_021200.1_1080681_1081755_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|452aa|up_4|NC_021200.1_1081751_1083107_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|232aa|up_3|NC_021200.1_1083112_1083808_+	COG3253, ywfI, Predicted heme peroxidase involved in anaerobic stress response [General function prediction only]	NA|251aa|up_2|NC_021200.1_1083804_1084557_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|283aa|up_1|NC_021200.1_1084623_1085472_-	pfam18741, MTES_1575, REase_MTES_1575	NA|135aa|up_0|NC_021200.1_1085605_1086010_-	pfam01641, SelR, SelR domain	NA|429aa|down_0|NC_021200.1_1086177_1087464_-	pfam09594, GT87, Glycosyltransferase family 87	NA|520aa|down_1|NC_021200.1_1087492_1089052_-	pfam08386, Abhydrolase_4, TAP-like protein	NA|255aa|down_2|NC_021200.1_1089066_1089831_-	PRK14059, PRK14059, pyrimidine reductase family protein	NA|245aa|down_3|NC_021200.1_1089829_1090564_+	pfam03969, AFG1_ATPase, AFG1-like ATPase	NA|177aa|down_4|NC_021200.1_1090541_1091072_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|176aa|down_5|NC_021200.1_1091059_1091587_-	NA	NA|251aa|down_6|NC_021200.1_1091626_1092379_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|123aa|down_7|NC_021200.1_1092475_1092844_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|115aa|down_8|NC_021200.1_1093043_1093388_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|310aa|down_9|NC_021200.1_1093416_1094346_+	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
GCF_000390085.1_ASM39008v1	NC_021200	Mycobacterium avium subsp. paratuberculosis MAP4, complete sequence	4	1114878-1114968	4	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas4,WYL,cas3	Orphan	GACTGCGTCCGACTGCGTCCCACC	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas4,WYL,cas3	NA|174aa|up_7|NC_021200.1_1108084_1108606_-,NA|100aa|up_5|NC_021200.1_1109182_1109482_-,NA|155aa|up_4|NC_021200.1_1109941_1110406_-,NA|113aa|up_3|NC_021200.1_1110569_1110908_-,NA|184aa|up_2|NC_021200.1_1112397_1112949_+,NA|97aa|down_0|NC_021200.1_1115379_1115670_+,NA|75aa|down_1|NC_021200.1_1116012_1116237_+,NA|93aa|down_3|NC_021200.1_1116745_1117024_-,NA|80aa|down_4|NC_021200.1_1117159_1117399_+,NA|145aa|down_5|NC_021200.1_1117391_1117826_+,NA|77aa|down_6|NC_021200.1_1117894_1118125_+,NA|61aa|down_7|NC_021200.1_1118354_1118537_+,NA|173aa|down_9|NC_021200.1_1119190_1119709_-	NA|405aa|up_9|NC_021200.1_1105569_1106784_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|423aa|up_8|NC_021200.1_1106808_1108077_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|174aa|up_7|NC_021200.1_1108084_1108606_-	NA	NA|103aa|up_6|NC_021200.1_1108682_1108991_-	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]	NA|100aa|up_5|NC_021200.1_1109182_1109482_-	NA	NA|155aa|up_4|NC_021200.1_1109941_1110406_-	NA	NA|113aa|up_3|NC_021200.1_1110569_1110908_-	NA	NA|184aa|up_2|NC_021200.1_1112397_1112949_+	NA	NA|71aa|up_1|NC_021200.1_1113043_1113256_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|159aa|up_0|NC_021200.1_1113252_1113729_+	pfam10888, DUF2742, Protein of unknown function (DUF2742)	NA|97aa|down_0|NC_021200.1_1115379_1115670_+	NA	NA|75aa|down_1|NC_021200.1_1116012_1116237_+	NA	NA|147aa|down_2|NC_021200.1_1116236_1116677_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|93aa|down_3|NC_021200.1_1116745_1117024_-	NA	NA|80aa|down_4|NC_021200.1_1117159_1117399_+	NA	NA|145aa|down_5|NC_021200.1_1117391_1117826_+	NA	NA|77aa|down_6|NC_021200.1_1117894_1118125_+	NA	NA|61aa|down_7|NC_021200.1_1118354_1118537_+	NA	NA|103aa|down_8|NC_021200.1_1118515_1118824_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|173aa|down_9|NC_021200.1_1119190_1119709_-	NA
GCF_000390085.1_ASM39008v1	NC_021200	Mycobacterium avium subsp. paratuberculosis MAP4, complete sequence	5	1290115-1290192	5	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas4,WYL,cas3	Orphan	TGGCCGCCGGCGCGGCGGCCGCCA	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas4,WYL,cas3	NA|82aa|up_7|NC_021200.1_1281138_1281384_-,NA	NA|373aa|up_9|NC_021200.1_1270923_1272042_+	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed	NA|795aa|up_8|NC_021200.1_1272123_1274508_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|82aa|up_7|NC_021200.1_1281138_1281384_-	NA	NA|68aa|up_6|NC_021200.1_1281550_1281754_+	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB	NA|351aa|up_5|NC_021200.1_1281750_1282803_-	pfam00823, PPE, PPE family	NA|396aa|up_4|NC_021200.1_1282877_1284065_-	pfam00823, PPE, PPE family	NA|231aa|up_3|NC_021200.1_1284875_1285568_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|420aa|up_2|NC_021200.1_1285564_1286824_+	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|111aa|up_1|NC_021200.1_1286820_1287153_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|580aa|up_0|NC_021200.1_1287163_1288903_-	PRK05850, PRK05850, acyl-CoA synthetase; Validated	NA|531aa|down_0|NC_021200.1_1291032_1292625_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|547aa|down_1|NC_021200.1_1292709_1294350_+	TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1	NA|321aa|down_2|NC_021200.1_1294349_1295312_+	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|201aa|down_3|NC_021200.1_1295404_1296007_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|390aa|down_4|NC_021200.1_1296027_1297197_-	PRK07855, PRK07855, lipid-transfer protein; Provisional	NA|154aa|down_5|NC_021200.1_1297193_1297655_-	cd03455, SAV4209, SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|374aa|down_6|NC_021200.1_1297651_1298773_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|135aa|down_7|NC_021200.1_1298780_1299185_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|182aa|down_8|NC_021200.1_1299184_1299730_-	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|395aa|down_9|NC_021200.1_1299749_1300934_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26
GCF_000390085.1_ASM39008v1	NC_021200	Mycobacterium avium subsp. paratuberculosis MAP4, complete sequence	6	2271399-2271505	6	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas4,WYL,cas3	Orphan	CGTTCGAGTGCCGCTTCGGCGTACGGCGCGCCGCGTTCGGC	41	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas4,WYL,cas3	NA|203aa|up_8|NC_021200.1_2262494_2263103_+,NA|222aa|up_5|NC_021200.1_2265154_2265820_-,NA	NA|407aa|up_9|NC_021200.1_2261053_2262274_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|203aa|up_8|NC_021200.1_2262494_2263103_+	NA	NA|210aa|up_7|NC_021200.1_2263110_2263740_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|408aa|up_6|NC_021200.1_2263833_2265057_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|222aa|up_5|NC_021200.1_2265154_2265820_-	NA	NA|506aa|up_4|NC_021200.1_2265914_2267432_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|666aa|up_3|NC_021200.1_2267450_2269448_+	pfam02958, EcKinase, Ecdysteroid kinase	NA|165aa|up_2|NC_021200.1_2269444_2269939_+	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|130aa|up_1|NC_021200.1_2270019_2270409_+	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system	NA|193aa|up_0|NC_021200.1_2270439_2271018_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|down_0|NC_021200.1_2272200_2272761_+	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|267aa|down_1|NC_021200.1_2272760_2273561_+	pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain	NA|117aa|down_2|NC_021200.1_2273574_2273925_-	pfam13564, DoxX_2, DoxX-like family	NA|407aa|down_3|NC_021200.1_2274244_2275465_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|312aa|down_4|NC_021200.1_2275545_2276481_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|443aa|down_5|NC_021200.1_2276546_2277875_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|315aa|down_6|NC_021200.1_2277871_2278816_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|281aa|down_7|NC_021200.1_2278802_2279645_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|357aa|down_8|NC_021200.1_2279647_2280718_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|323aa|down_9|NC_021200.1_2280725_2281694_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2
GCF_000390085.1_ASM39008v1	NC_021200	Mycobacterium avium subsp. paratuberculosis MAP4, complete sequence	7	2346648-2346746	7	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas4,WYL,cas3	Orphan	CGGTTGCGGCCCGACCCCCAGCGG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas4,WYL,cas3	NA,NA	NA|268aa|up_9|NC_021200.1_2338192_2338996_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|198aa|up_8|NC_021200.1_2339103_2339697_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|295aa|up_7|NC_021200.1_2339717_2340602_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|607aa|up_6|NC_021200.1_2340746_2342567_+	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|218aa|up_5|NC_021200.1_2342590_2343244_-	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|237aa|up_4|NC_021200.1_2343289_2344000_-	PRK07577, PRK07577, SDR family oxidoreductase	NA|146aa|up_3|NC_021200.1_2344181_2344619_-	pfam00553, CBM_2, Cellulose binding domain	NA|281aa|up_2|NC_021200.1_2344842_2345685_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|134aa|up_1|NC_021200.1_2345638_2346040_+	cd08355, TioX_like, Micromonospora sp	NA|104aa|up_0|NC_021200.1_2346190_2346502_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|152aa|down_0|NC_021200.1_2346888_2347344_+	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|492aa|down_1|NC_021200.1_2347540_2349016_+	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|392aa|down_2|NC_021200.1_2349012_2350188_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|410aa|down_3|NC_021200.1_2350184_2351414_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|148aa|down_4|NC_021200.1_2351578_2352022_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|down_5|NC_021200.1_2352082_2352463_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|143aa|down_6|NC_021200.1_2352568_2352997_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|107aa|down_7|NC_021200.1_2353309_2353630_+	pfam00226, DnaJ, DnaJ domain	NA|469aa|down_8|NC_021200.1_2353683_2355090_-	pfam00668, Condensation, Condensation domain	NA|186aa|down_9|NC_021200.1_2355739_2356297_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
GCF_000390085.1_ASM39008v1	NC_021200	Mycobacterium avium subsp. paratuberculosis MAP4, complete sequence	8	3019476-3019556	8	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas4,WYL,cas3	Orphan	CCGCCCTACCCCGCTTCGCGGCG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,DEDDh,cas4,WYL,cas3	NA,NA	NA|489aa|up_9|NC_021200.1_3010396_3011863_+	pfam00823, PPE, PPE family	NA|113aa|up_8|NC_021200.1_3011966_3012305_+	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family	NA|155aa|up_7|NC_021200.1_3012338_3012803_-	pfam10756, bPH_6, Bacterial PH domain	NA|161aa|up_6|NC_021200.1_3012799_3013282_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|426aa|up_5|NC_021200.1_3013331_3014609_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|200aa|up_4|NC_021200.1_3014730_3015330_-	PRK09289, PRK09289, riboflavin synthase	NA|236aa|up_3|NC_021200.1_3015448_3016156_+	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein	NA|519aa|up_2|NC_021200.1_3016152_3017709_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|342aa|up_1|NC_021200.1_3017705_3018731_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|236aa|up_0|NC_021200.1_3018727_3019435_-	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated	NA|316aa|down_0|NC_021200.1_3020929_3021877_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|275aa|down_1|NC_021200.1_3022034_3022859_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|162aa|down_2|NC_021200.1_3022864_3023350_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|656aa|down_3|NC_021200.1_3023477_3025445_-	PRK14873, PRK14873, primosomal protein N'	NA|264aa|down_4|NC_021200.1_3025529_3026321_-	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|321aa|down_5|NC_021200.1_3026319_3027282_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|497aa|down_6|NC_021200.1_3027327_3028818_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|404aa|down_7|NC_021200.1_3028967_3030179_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|421aa|down_8|NC_021200.1_3030275_3031538_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|109aa|down_9|NC_021200.1_3031559_3031886_-	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit
GCF_000390085.1_ASM39008v1	NC_021200	Mycobacterium avium subsp. paratuberculosis MAP4, complete sequence	9	4641034-4641141	9	CRISPRCasFinder	no		DinG,csa3,DEDDh,cas4,WYL,cas3	Orphan	CGGCCAAGAAGGCACCGGCCAAGA	24	1	2	4641058-4641075|4641058-4641075	NC_021200.1_4019797-4019814|NC_021200.1_2271357-2271340	NA	2	2	Orphan	DinG,csa3,DEDDh,cas4,WYL,cas3	NA,NA	NA|244aa|up_9|NC_021200.1_4632843_4633575_+	TIGR03964, uncharacterized_protein_putative_amidase, mycofactocin system creatininase family protein	NA|473aa|up_8|NC_021200.1_4633571_4634990_+	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase	NA|480aa|up_7|NC_021200.1_4634999_4636439_+	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	NA|198aa|up_6|NC_021200.1_4636592_4637186_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|102aa|up_5|NC_021200.1_4637537_4637843_+	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|218aa|up_4|NC_021200.1_4637857_4638511_+	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|218aa|up_3|NC_021200.1_4638510_4639164_+	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|101aa|up_2|NC_021200.1_4639163_4639466_+	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|281aa|up_1|NC_021200.1_4639488_4640331_+	PRK09374, rplB, 50S ribosomal protein L2; Validated	NA|94aa|up_0|NC_021200.1_4640358_4640640_+	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed	NA|281aa|down_0|NC_021200.1_4641178_4642021_+	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed	NA|139aa|down_1|NC_021200.1_4642024_4642441_+	PRK09203, rplP, 50S ribosomal protein L16; Reviewed	NA|78aa|down_2|NC_021200.1_4642440_4642674_+	PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed	NA|117aa|down_3|NC_021200.1_4642673_4643024_+	PRK05610, rpsQ, 30S ribosomal protein S17; Reviewed	NA|790aa|down_4|NC_021200.1_4643114_4645484_+	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|376aa|down_5|NC_021200.1_4645495_4646623_-	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88	NA|314aa|down_6|NC_021200.1_4646890_4647832_+	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|297aa|down_7|NC_021200.1_4647860_4648751_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|296aa|down_8|NC_021200.1_4648934_4649822_+	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|501aa|down_9|NC_021200.1_4649909_4651412_+	pfam02720, DUF222, Domain of unknown function (DUF222)
