The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	765893	773712	2850503		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|765893_766949_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|766948_767635_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|767609_768083_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093554.1|768423_768864_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|769143_769728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|769826_770540_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|770543_770963_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446726.1|770964_771633_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
WP_000604517.1|771983_772577_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_001217805.1|772560_773712_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	785688	800079	2850503		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663021.1|785688_786747_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
WP_000197263.1|786904_787453_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|788255_789173_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_031785486.1|789263_789365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193753.1|789442_790948_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_000930014.1|791288_791789_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|791808_792675_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|793476_793875_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|793837_795943_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562500.1|796060_797032_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_000876313.1|797406_798378_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_001245581.1|798364_799321_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616861.1|799317_800079_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
>prophage 3
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	1042207	1050680	2850503		Synechococcus_phage(33.33%)	9	NA	NA
WP_001622461.1|1042207_1042690_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010404.1|1042676_1043801_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174048.1|1043804_1044509_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
WP_000848350.1|1044508_1044772_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666803.1|1044773_1045445_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032752.1|1045437_1047627_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483713.1|1047605_1049090_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030827.1|1049082_1050111_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
WP_000238657.1|1050113_1050680_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
>prophage 4
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	1306167	1320676	2850503	integrase,portal,capsid,terminase	Staphylococcus_phage(57.14%)	25	1299990:1300007	1324479:1324496
1299990:1300007	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_000146714.1|1306167_1306875_-|integrase	phage integrase SAM-like domain-containing protein	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
WP_001183752.1|1306927_1307623_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.9	1.4e-06
WP_000554409.1|1307634_1308018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001083979.1|1308164_1308530_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000842950.1|1308691_1308928_+	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	82.4	7.4e-29
WP_000789021.1|1308952_1309234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072840.1|1309404_1309566_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786995.1|1309652_1309970_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786635.1|1309959_1310226_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_001004328.1|1310230_1310767_+	host-nuclease inhibitor Gam family protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000818736.1|1310767_1311547_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
WP_000702008.1|1311573_1312122_+	hypothetical protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.7e-92
WP_016528712.1|1312135_1313074_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	47.8	1.1e-46
WP_000945229.1|1313074_1313365_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_000714365.1|1313379_1313538_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000860976.1|1313543_1313720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001622384.1|1313716_1313854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185174.1|1313846_1314377_+	MazG-like family protein	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_025174108.1|1314518_1314626_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_000835356.1|1314622_1315087_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
WP_000653928.1|1315363_1315852_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_000090969.1|1316003_1316432_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207539.1|1316418_1317693_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.2e-194
WP_000158571.1|1317705_1319154_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	2.8e-195
WP_016528713.1|1319143_1320676_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	61.9	3.9e-110
1324479:1324496	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 5
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	1498502	1584594	2850503	protease,portal,integrase,capsid,tRNA,tail,head,terminase,holin,plate	Staphylococcus_phage(71.25%)	105	1536504:1536521	1583111:1583128
WP_000858795.1|1498502_1499795_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000525057.1|1500116_1502810_-	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_001622326.1|1502833_1503805_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361547.1|1503791_1504994_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	1.9e-35
WP_000690024.1|1504998_1506141_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839928.1|1506397_1506715_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1507051_1507732_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154694.1|1507803_1508391_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005212.1|1508380_1508956_-	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
WP_000389524.1|1508969_1510214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245905.1|1510220_1511519_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776333.1|1511528_1512593_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269939.1|1512618_1513785_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
WP_000789524.1|1514192_1514393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442481.1|1514602_1515052_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	5.4e-28
WP_001096468.1|1515143_1516103_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.0	2.2e-10
WP_000774683.1|1516104_1516830_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450565.1|1516832_1517405_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1517835_1518108_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161733.1|1518278_1519277_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1519293_1520604_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133956.1|1520825_1522001_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_011382287.1|1522257_1522449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001806145.1|1522565_1522682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644393.1|1522712_1523372_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681753.1|1523448_1524417_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1524531_1525518_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000069306.1|1525917_1527381_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902118.1|1527533_1528913_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163808.1|1528902_1529856_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001151999.1|1529963_1530212_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	6.4e-15
WP_001186906.1|1530317_1530863_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000476856.1|1531468_1532383_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_170267452.1|1532473_1532689_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	1.5e-25
WP_000675478.1|1533065_1533902_-	hypothetical protein	NA	D2JLG6	Staphylococcus_phage	100.0	8.4e-152
WP_000909210.1|1534517_1535972_-	N-acetylmuramoyl-L-alanine amidase	NA	Q8SDN4	Staphylococcus_virus	99.8	7.5e-289
WP_000339144.1|1535982_1536285_-|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_000466784.1|1536420_1536720_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1536504:1536521	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1536765_1536930_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1536922_1537312_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067131.1|1537311_1538778_-|plate	phage baseplate upper protein	plate	A0A2I6PE72	Staphylococcus_phage	100.0	1.5e-273
WP_000429552.1|1538777_1540688_-	hypothetical protein	NA	A0A2K9VBU3	Staphylococcus_phage	100.0	0.0e+00
WP_000179860.1|1540703_1540994_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000384462.1|1540993_1542577_-|tail	phage tail protein	tail	Q8SDP1	Staphylococcus_virus	100.0	7.1e-309
WP_001190533.1|1542585_1543410_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003425.1|1543409_1549610_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	100.0	0.0e+00
WP_000438833.1|1549623_1549782_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1549823_1550174_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1550231_1550687_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807540.1|1550778_1551420_-|tail	tail protein	tail	A0A2I6PE59	Staphylococcus_phage	100.0	1.0e-120
WP_001023802.1|1551454_1551850_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|1551850_1552252_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395505.1|1552248_1552581_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	99.1	2.4e-57
WP_000050975.1|1552592_1552871_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PE36	Staphylococcus_phage	100.0	2.1e-46
WP_001142735.1|1552939_1554103_-|capsid	phage major capsid protein	capsid	A0A2I6PE62	Staphylococcus_phage	100.0	3.6e-217
WP_000061868.1|1554114_1554888_-|protease	Clp protease ClpP	protease	A0A2I6PE26	Staphylococcus_phage	100.0	4.9e-138
WP_001100670.1|1554871_1556110_-|portal	phage portal protein	portal	A0A2I6PEA6	Staphylococcus_phage	100.0	6.9e-235
WP_000153555.1|1556114_1557806_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_000778932.1|1557795_1558101_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|1558229_1558544_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000513699.1|1558700_1559138_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_072519166.1|1559150_1560518_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	6.6e-263
WP_000665203.1|1560498_1560789_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_015978074.1|1560922_1561027_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_000884846.1|1561129_1563577_-	virulence-associated E family protein	NA	Q4ZCN2	Staphylococcus_virus	99.0	0.0e+00
WP_000265258.1|1563628_1563829_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000595260.1|1563896_1564049_-	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
WP_001568228.1|1564045_1564435_-	hypothetical protein	NA	M9QX07	Staphylococcus_phage	100.0	2.8e-65
WP_000481976.1|1564424_1564661_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	93.6	7.6e-34
WP_000195833.1|1564685_1564922_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	92.3	1.9e-32
WP_000028780.1|1564918_1565161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000185680.1|1565197_1565734_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_016528722.1|1565726_1565975_-	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	96.3	5.9e-37
WP_000615884.1|1565967_1566399_-	hypothetical protein	NA	Q4ZBT4	Staphylococcus_virus	99.3	1.6e-74
WP_000983947.1|1566398_1566590_-	hypothetical protein	NA	Q4ZBT5	Staphylococcus_virus	100.0	1.5e-27
WP_016528723.1|1566586_1566979_-	hypothetical protein	NA	A0A2I6PE39	Staphylococcus_phage	99.2	2.7e-68
WP_016528724.1|1566993_1567242_-	hypothetical protein	NA	Q4ZBT7	Staphylococcus_virus	93.6	3.8e-36
WP_000029381.1|1567242_1567602_-	hypothetical protein	NA	A0A0E3T8L4	Staphylococcus_phage	95.8	2.7e-59
WP_001187249.1|1567602_1567788_-	DUF3113 family protein	NA	A0A0N9BBI1	Staphylococcus_phage	95.1	6.0e-26
WP_000152769.1|1567787_1567943_-	hypothetical protein	NA	A0A2I6PDP0	Staphylococcus_phage	94.1	3.5e-19
WP_076050776.1|1567954_1569907_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	99.7	0.0e+00
WP_016528725.1|1569974_1570532_-	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	99.5	3.9e-97
WP_015581855.1|1570557_1571724_-	DUF2800 domain-containing protein	NA	A7TWG4	Staphylococcus_phage	100.0	1.8e-221
WP_000985986.1|1571720_1572083_-	hypothetical protein	NA	Q4ZCP8	Staphylococcus_virus	100.0	2.2e-56
WP_000175000.1|1572097_1572421_-	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
WP_001285954.1|1572499_1572661_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124160.1|1572673_1572937_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1572961_1573177_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001128433.1|1573231_1573597_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1573565_1573811_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000773059.1|1573877_1574258_+	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
WP_001148860.1|1574244_1574442_-	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
WP_000362644.1|1574511_1574724_+	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
WP_000771849.1|1574764_1574914_-	hypothetical protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
WP_000435357.1|1574928_1575372_-	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	100.0	8.9e-76
WP_000213811.1|1575419_1575632_-	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_000511090.1|1575783_1576515_+	helix-turn-helix transcriptional regulator	NA	S4SVC5	Staphylococcus_phage	99.2	1.3e-132
WP_000705240.1|1576585_1576768_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001794606.1|1576804_1576951_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	97.9	2.6e-16
WP_000191459.1|1576947_1577562_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_000264751.1|1577687_1578893_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001827592.1|1578935_1580963_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	56.3	4.2e-56
WP_001622322.1|1580955_1581885_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987760.1|1582136_1583888_-	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.3	1.3e-21
1583111:1583128	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000064074.1|1583868_1584594_-	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	6.0e-45
>prophage 6
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	1639713	1648025	2850503	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1639713_1640499_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1640624_1641515_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062169.1|1641524_1642871_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683915.1|1642984_1644085_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624564.1|1644087_1644765_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1644895_1646002_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217237.1|1646225_1648025_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
>prophage 7
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	1717338	1726382	2850503	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1717338_1717857_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594988.1|1717878_1720152_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	7.3e-65
WP_000749795.1|1720355_1722635_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1722909_1723170_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1723188_1724328_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1724350_1725376_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1725377_1726382_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	1856290	1903845	2850503	tRNA,protease,transposase	Staphylococcus_phage(88.89%)	43	NA	NA
WP_016528732.1|1856290_1862848_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	87.6	2.3e-292
WP_000836464.1|1863172_1863484_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
WP_001622206.1|1863505_1865923_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_001025064.1|1866211_1867393_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526542.1|1867502_1868456_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764418.1|1868452_1869016_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000757543.1|1869132_1869534_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1870104_1870932_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1870934_1871054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1871165_1872167_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1872288_1872753_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159030.1|1872765_1873947_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493880.1|1873957_1874590_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_000077348.1|1874596_1875640_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
WP_001261688.1|1876121_1877624_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221174.1|1878266_1878581_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_000989113.1|1878580_1879873_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
WP_001032834.1|1879959_1880814_-	N-acetylglucosaminidase	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1881088_1881313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671060.1|1881511_1881982_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
WP_001152694.1|1882094_1882538_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030473.1|1882524_1882968_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_000492904.1|1884066_1884687_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1885422_1886136_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1886394_1886697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200545.1|1886952_1887318_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_000623468.1|1887314_1887668_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
WP_000453324.1|1887917_1888751_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366165.1|1888962_1889871_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933821.1|1889995_1891189_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109912.1|1891560_1893153_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001827685.1|1893532_1894279_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_000672013.1|1894283_1894757_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718111.1|1894822_1895080_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000778530.1|1895076_1896078_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	3.1e-185
WP_001622194.1|1896082_1897561_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	94.9	3.9e-277
WP_098686295.1|1897753_1898882_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_072468941.1|1898945_1899401_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_001796416.1|1899703_1900354_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_000070666.1|1900434_1901430_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_000669031.1|1901505_1902132_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000627532.1|1902172_1902514_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
WP_098686295.1|1902715_1903845_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 9
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	1943523	2016910	2850503	portal,integrase,capsid,tRNA,tail,head,terminase,holin,plate	Staphylococcus_phage(81.54%)	86	1976941:1976957	2024443:2024459
WP_000181394.1|1943523_1943994_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_000379990.1|1943998_1945126_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000590809.1|1945276_1945999_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
WP_000649917.1|1945991_1947449_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063547.1|1947707_1948769_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000110011.1|1957597_1958044_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869466.1|1958140_1959091_-	phosphoglycerate dehydrogenase	NA	NA	NA	NA	NA
WP_000939524.1|1959096_1959552_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001011611.1|1959632_1960922_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001796444.1|1961214_1962309_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_016528740.1|1962499_1964236_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251252.1|1964525_1965068_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_001622168.1|1965370_1966408_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379095.1|1966559_1967537_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886472.1|1967797_1968634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000535840.1|1968642_1970160_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|1970174_1970489_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124427.1|1970466_1971285_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1971545_1972355_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163283.1|1972696_1973212_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1973349_1973511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106875183.1|1973857_1973938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001251276.1|1974034_1974418_-	hypothetical protein	NA	A0A2H4PQP6	Staphylococcus_phage	99.2	6.1e-65
WP_000344116.1|1974404_1974716_-	DUF3467 domain-containing protein	NA	A0A2H4PQQ9	Staphylococcus_phage	100.0	4.1e-51
WP_016528741.1|1975112_1976558_-	SH3 domain-containing protein	NA	Q4ZAM7	Staphylococcus_virus	99.0	8.5e-293
WP_000354132.1|1976538_1976976_-|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
1976941:1976957	attL	TTTATTTTTAAATCTCA	NA	NA	NA	NA
WP_000398862.1|1977031_1977427_-	hypothetical protein	NA	Q4ZBW9	Staphylococcus_virus	100.0	1.6e-68
WP_000276647.1|1977432_1978605_-|plate	BppU family phage baseplate upper protein	plate	A0EWU8	Staphylococcus_virus	100.0	4.1e-197
WP_000524040.1|1978617_1980492_-	glucosaminidase domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	100.0	0.0e+00
WP_000466769.1|1980628_1980928_-	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_001790193.1|1980968_1981142_-	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000705914.1|1981145_1981523_-	DUF2977 domain-containing protein	NA	W5R9M2	Staphylococcus_phage	99.2	3.4e-60
WP_016528742.1|1981522_1983346_-|plate	phage baseplate upper protein	plate	W5R8J5	Staphylococcus_phage	95.2	8.2e-277
WP_000323255.1|1983345_1985244_-	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	97.5	0.0e+00
WP_016528743.1|1985256_1987143_-|tail	phage tail protein	tail	Q4ZBQ3	Staphylococcus_phage	99.8	0.0e+00
WP_000560181.1|1987153_1988095_-|tail	phage tail family protein	tail	Q4ZBQ4	Staphylococcus_phage	100.0	5.2e-182
WP_016528744.1|1988109_1991253_-	hypothetical protein	NA	Q4ZBY3	Staphylococcus_virus	100.0	0.0e+00
WP_000880587.1|1991256_1991541_-	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_000134337.1|1991585_1992092_-	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000057582.1|1992158_1992716_-|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000270192.1|1992716_1993142_-	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_001151330.1|1993154_1993568_-	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	100.0	1.1e-75
WP_000483041.1|1993554_1993890_-|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_016528745.1|1993901_1994252_-|head,tail	phage gp6-like head-tail connector family protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	99.1	4.1e-60
WP_000002931.1|1994257_1994401_-	hypothetical protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
WP_000235168.1|1994412_1995327_-|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_001019219.1|1995343_1995928_-	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
WP_000346033.1|1996030_1996237_-	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_000184133.1|1996238_1997192_-|head	phage head morphogenesis protein	head	A0A0N7E0U6	Staphylococcus_phage	99.7	6.6e-177
WP_016528746.1|1997160_1998585_-|portal	phage portal protein	portal	Q4ZBZ7	Staphylococcus_virus	99.6	1.2e-270
WP_001037578.1|1998581_1999805_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_000594087.1|1999797_2000292_-|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	99.4	2.2e-83
WP_000286968.1|2000644_2001046_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000595257.1|2001046_2001220_-	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000608278.1|2001212_2001449_-	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_001072795.1|2001441_2001645_-	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000132921.1|2001641_2001836_-	hypothetical protein	NA	A0A2I6PEC2	Staphylococcus_phage	100.0	6.0e-29
WP_016528747.1|2001832_2002039_-	DUF1381 domain-containing protein	NA	A0A059T622	Staphylococcus_phage	97.1	1.9e-20
WP_000185636.1|2002075_2002585_-	dUTP pyrophosphatase	NA	A0A1X9H051	Staphylococcus_phage	100.0	6.6e-91
WP_000144711.1|2002817_2003126_-	hypothetical protein	NA	R4IFL1	Staphylococcus_phage	100.0	4.8e-52
WP_000979209.1|2003122_2003470_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695757.1|2003466_2003868_-	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	91.0	6.0e-63
WP_000693989.1|2003870_2004077_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000131363.1|2004091_2004334_-	hypothetical protein	NA	D2JGL2	Staphylococcus_phage	97.5	2.5e-40
WP_000101289.1|2004337_2004706_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	98.4	2.0e-49
WP_000401960.1|2004718_2005123_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|2005131_2005350_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148316.1|2005356_2006241_-	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	100.0	5.4e-141
WP_016528748.1|2006270_2006741_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	99.4	9.7e-81
WP_073394849.1|2006741_2007359_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138472.1|2007439_2008360_-	recombinase RecT	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
WP_016528749.1|2008361_2010305_-	AAA family ATPase	NA	A0EWX0	Staphylococcus_phage	98.8	0.0e+00
WP_001205732.1|2010313_2010577_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291089.1|2010585_2010846_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000066011.1|2010939_2011101_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000594789.1|2011093_2011315_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000395455.1|2011385_2011616_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_016528750.1|2011953_2012157_-	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	98.5	5.2e-31
WP_001148568.1|2012172_2012961_-	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	99.6	3.6e-144
WP_016528751.1|2012989_2013766_-	Rha family transcriptional regulator	NA	A0A2D1G5J2	Staphylococcus_phage	88.4	7.6e-123
WP_000514498.1|2013822_2014152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398750.1|2014126_2014285_-	hypothetical protein	NA	Q4ZA65	Staphylococcus_virus	98.0	9.6e-17
WP_000272858.1|2014300_2014549_-	helix-turn-helix transcriptional regulator	NA	Q4ZBN5	Staphylococcus_phage	100.0	2.2e-39
WP_001260487.1|2014712_2015036_+	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000525016.1|2015048_2015510_+	hypothetical protein	NA	Q4ZBN7	Staphylococcus_phage	100.0	1.2e-83
WP_016528752.1|2015863_2016910_+|integrase	site-specific integrase	integrase	Q4ZE08	Staphylococcus_virus	99.7	3.6e-200
2024443:2024459	attR	TGAGATTTAAAAATAAA	NA	NA	NA	NA
>prophage 10
NC_021554	Staphylococcus aureus CA-347, complete sequence	2850503	2038030	2134692	2850503	protease,transposase,integrase,capsid,tRNA,tail,head,terminase,holin	Staphylococcus_phage(85.71%)	114	2100316:2100333	2125890:2125907
WP_000545370.1|2038030_2039458_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027926.1|2039470_2040928_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2040929_2041232_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957019.1|2041598_2043137_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|2043225_2044425_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_016528754.1|2044437_2046441_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	35.9	9.8e-114
WP_000992924.1|2046444_2048637_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272062.1|2048633_2049326_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2049497_2049800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2049908_2051204_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827739.1|2052050_2053217_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_016528755.1|2053247_2053574_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669865.1|2053864_2054038_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2054018_2054621_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000164017.1|2054891_2055713_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	4.4e-68
WP_000284429.1|2055705_2057175_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	2.5e-106
WP_001622122.1|2057358_2058435_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177820.1|2058454_2059249_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_031785526.1|2059320_2059428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2059438_2061001_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275721.1|2061205_2062303_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	2.5e-47
WP_000149686.1|2062674_2063235_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2063287_2064217_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2064409_2064583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016528756.1|2064634_2066014_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181320.1|2066133_2067162_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205103.1|2067431_2067833_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
WP_000267034.1|2067889_2068063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188080.1|2068513_2069554_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
WP_000713063.1|2069610_2070453_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033966.1|2070449_2071007_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966286.1|2071066_2071591_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2071711_2072275_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221648.1|2072340_2073081_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2073080_2073953_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645721.1|2073949_2074630_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991300.1|2074630_2075527_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2075523_2075904_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|2076161_2076338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2076579_2076678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068518.1|2076877_2078164_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669710.1|2078434_2080504_-	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_000669789.1|2081461_2081641_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2081951_2082212_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2082264_2082615_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2083298_2083748_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000919350.1|2084827_2085319_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2085509_2086265_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611509.1|2086276_2086531_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	98.8	3.4e-40
WP_001791821.1|2086582_2086690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2086742_2086919_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001040261.1|2087422_2087710_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2087756_2087909_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2087898_2091684_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|2091699_2093184_-|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001796452.1|2093180_2097710_-|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
WP_001549167.1|2097766_2097904_-	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_001096355.1|2097954_2098305_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2098354_2098579_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268733.1|2098620_2099265_-|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_000565498.1|2099265_2099673_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114227.1|2099669_2100074_-	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_001622118.1|2100070_2100433_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	99.2	4.9e-64
2100316:2100333	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2100416_2100701_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2100690_2100975_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2100994_2102140_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2102163_2102901_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_098686295.1|2103690_2104820_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_001622115.1|2105314_2106976_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000402904.1|2106972_2107317_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2107447_2107747_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2107978_2108395_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001622114.1|2108422_2108623_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000595265.1|2108622_2108772_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2108768_2109155_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2109151_2109358_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2109354_2109600_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001066447.1|2109636_2110173_-	dUTP diphosphatase	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_000714403.1|2110165_2110336_-	hypothetical protein	NA	A0A0H3U4U6	Staphylococcus_phage	100.0	8.2e-22
WP_001065097.1|2110322_2110577_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000131370.1|2110591_2110834_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101288.1|2110837_2111206_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401960.1|2111218_2111623_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|2111631_2111850_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148321.1|2111856_2112750_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000610648.1|2112779_2113250_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_073394849.1|2113250_2113868_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138472.1|2113948_2114869_-	recombinase RecT	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
WP_016528759.1|2114870_2116814_-	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	94.3	0.0e+00
WP_001205732.1|2116822_2117086_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2117094_2117355_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2117359_2117662_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2117756_2117918_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2117914_2118238_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762519.1|2118292_2118673_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001148862.1|2118659_2118857_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148605.1|2118872_2119625_-	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001622080.1|2119675_2120005_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	99.1	4.6e-53
WP_001025404.1|2119993_2120209_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854073.1|2120224_2120488_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	98.9	2.1e-40
WP_001801500.1|2120484_2120658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2120620_2121334_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2121349_2122282_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2122287_2122629_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|2122832_2123015_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|2123114_2123579_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|2123637_2124675_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595616.1|2125812_2126832_-	leukocidin/hemolysin toxin family protein	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
2125890:2125907	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791399.1|2126853_2127909_-	leukocidin family pore-forming toxin	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
WP_000206615.1|2128339_2129563_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045070.1|2129958_2131266_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|2131797_2133414_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2133489_2133774_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197627.1|2133948_2134692_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
