bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.1|787508|36|NC_021554|CRT	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	97.22	36	1	0	1	36	948056	948021	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	5e-10	55.5	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAATGCA	948021-948056	TGCATTGCTTGTAGAATTTCTTTTCGAAATTCTCTG	1
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.1|787508|36|NC_021554|CRT	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	94.44	36	2	0	1	36	90127	90092	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	5e-09	52.3	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAATGCA	90092-90127	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTG	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.1|787508|36|NC_021554|CRT	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	94.44	36	2	0	1	36	430349	430384	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	5e-09	52.3	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAATGCA	430349-430384	CAGAGGATTTCGAAAAGAAATTCTACAGACAATGCA	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.3|787623|36|NC_021554|CRT	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	97.22	36	1	0	1	36	948056	948021	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	5e-10	55.5	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAATGCA	948021-948056	TGCATTGCTTGTAGAATTTCTTTTCGAAATTCTCTG	1
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.3|787623|36|NC_021554|CRT	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	94.44	36	2	0	1	36	90127	90092	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	5e-09	52.3	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAATGCA	90092-90127	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTG	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.3|787623|36|NC_021554|CRT	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	94.44	36	2	0	1	36	430349	430384	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	5e-09	52.3	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAATGCA	430349-430384	CAGAGGATTTCGAAAAGAAATTCTACAGACAATGCA	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.4|787565|33|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	96.97	33	1	0	1	33	1066928	1066896	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	1e-08	50.7	1.0	AAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1066896-1066928	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTT	1
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.4|787565|33|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.94	33	2	0	1	33	833760	833728	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	1e-07	47.5	1.0	AAGAAGCTGACGAAAAGTCAGCTTACAATAATG	833728-833760	CATTATTGTAAGCTGACTTTACGTTAGCTTCTT	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.4|787565|33|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.94	33	2	0	1	33	1066987	1066955	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	1e-07	47.5	1.0	AAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1066955-1066987	CATTATCGTAAGCTGACTTTTCGTCAGCTTATT	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	96.88	32	1	0	1	32	948056	948025	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	3e-08	49.1	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	948025-948056	TTGCTTGTAGAATTTCTTTTCGAAATTCTCTG	1
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	96.88	32	1	0	1	32	1361625	1361594	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	3e-08	49.1	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	1361594-1361625	TTGTTTGTGGAATTTCTTTTCGAAATTCTCTG	1
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	96.88	32	1	0	1	32	2129846	2129815	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	3e-08	49.1	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	2129815-2129846	TTGTTCGTAGAATTTCTTTTCGAAATTCTCTG	1
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.75	32	2	0	1	32	90127	90096	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	2e-07	46.0	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	90096-90127	TTGCCTGTAGAATTTCTTTTCGAAATTCTCTG	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.75	32	2	0	1	32	280580	280611	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	2e-07	46.0	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	280580-280611	CAGAGAATTTCGAAAAGAAATTCTACAGGCAA	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.75	32	2	0	1	32	430349	430380	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	2e-07	46.0	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	430349-430380	CAGAGGATTTCGAAAAGAAATTCTACAGACAA	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.75	32	2	0	1	32	833702	833671	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	2e-07	46.0	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	833671-833702	TTGCCTGTAGAATTTCTTTTCGAAATTCTCTG	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.75	32	2	0	1	32	1668126	1668095	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	2e-07	46.0	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	1668095-1668126	TTGCCTGTAGAATTTCTTTTCGAAATTCTCTG	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.75	32	2	0	1	32	1884965	1884996	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	2e-07	46.0	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	1884965-1884996	CAGAGAATTTCGACAAGAAATTCTACAAGCAA	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	1.5|787623|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.75	32	2	0	1	32	2409712	2409743	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	2e-07	46.0	1.0	CAGAGAATTTCGAAAAGAAATTCTACAAACAA	2409712-2409743	CAGAGAATTTCGAAAAGAAATTCTACAGGCAA	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	2.1|833760|34|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	34	0	0	1	34	1066869	1066902	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	5e-10	55.5	1.0	TTGTTGGGGCCCACACCCCAACTTGCACATTATC	1066869-1066902	TTGTTGGGGCCCACACCCCAACTTGCACATTATC	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	2.1|833760|34|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	34	0	0	1	34	1066928	1066961	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	5e-10	55.5	1.0	TTGTTGGGGCCCACACCCCAACTTGCACATTATC	1066928-1066961	TTGTTGGGGCCCACACCCCAACTTGCACATTATC	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	3.1|840231|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	32	0	0	1	32	280734	280703	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	3e-09	52.3	1.0	AACTTGCACATTATTGTAAGCTGACTTTCCGC	280703-280734	GCGGAAAGTCAGCTTACAATAATGTGCAAGTT	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	3.1|840231|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	32	0	0	1	32	2409922	2409891	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	3e-09	52.3	1.0	AACTTGCACATTATTGTAAGCTGACTTTCCGC	2409891-2409922	GCGGAAAGTCAGCTTACAATAATGTGCAAGTT	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	3.1|840231|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	32	0	0	1	32	2409978	2409947	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	3e-09	52.3	1.0	AACTTGCACATTATTGTAAGCTGACTTTCCGC	2409947-2409978	GCGGAAAGTCAGCTTACAATAATGTGCAAGTT	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	3.1|840231|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	32	0	0	1	32	2410034	2410003	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	3e-09	52.3	1.0	AACTTGCACATTATTGTAAGCTGACTTTCCGC	2410003-2410034	GCGGAAAGTCAGCTTACAATAATGTGCAAGTT	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	3.1|840231|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	32	0	0	1	32	2568549	2568518	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	3e-09	52.3	1.0	AACTTGCACATTATTGTAAGCTGACTTTCCGC	2568518-2568549	GCGGAAAGTCAGCTTACAATAATGTGCAAGTT	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	3.1|840231|32|NC_021554|CRISPRCasFinder	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	93.75	32	2	0	1	32	1942239	1942208	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	2e-07	46.0	1.0	AACTTGCACATTATTGTAAGCTGACTTTCCGC	1942208-1942239	GCGGAAAGTCAGCTTTCAATAACGTGCAAGTT	2
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	280715	280728	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	280715-280728	CTTACAATAATGTG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	317868	317881	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	317868-317881	CTTACAATAATGTG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	833739	833726	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	833726-833739	CACATTATTGTAAG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	840194	840181	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	840181-840194	CACATTATTGTAAG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	878839	878826	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	878826-878839	CACATTATTGTAAG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	927678	927691	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	927678-927691	CTTACAATAATGTG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	927734	927747	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	927734-927747	CTTACAATAATGTG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	1141114	1141127	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	1141114-1141127	CTTACAATAATGTG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	1361661	1361648	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	1361648-1361661	CACATTATTGTAAG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	2364486	2364473	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	2364473-2364486	CACATTATTGTAAG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	2375292	2375279	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	2375279-2375292	CACATTATTGTAAG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	2375406	2375393	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	2375393-2375406	CACATTATTGTAAG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	2375466	2375453	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	2375453-2375466	CACATTATTGTAAG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	2409847	2409860	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	2409847-2409860	CTTACAATAATGTG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	2409903	2409916	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	2409903-2409916	CTTACAATAATGTG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	2409959	2409972	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	2409959-2409972	CTTACAATAATGTG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	2410015	2410028	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	2410015-2410028	CTTACAATAATGTG	0
NC_021554	Staphylococcus aureus CA-347, complete sequence	4.2|927649|14|NC_021554|PILER-CR	NC_021554.1	Staphylococcus aureus CA-347, complete sequence	100.00	14	0	0	1	14	2568530	2568543	787487-787679|833735-833818|840207-840286|927532-927677|2336721-2336856|2527875-2527968	0.79	23.8	1.0	CTTACAATAATGTG	2568530-2568543	CTTACAATAATGTG	0
