assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000427275.1_ASM42727v1	NC_021738	Mannheimia haemolytica D171, complete sequence	1	8737-8811	1	CRISPRCasFinder	no	DinG	DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,PD-DExK,WYL	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,PD-DExK,WYL	NA,NA|74aa|down_7|NC_021738.1_18554_18776_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|90aa|up_2|NC_021738.1_689_959_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|1399aa|up_1|NC_021738.1_2193_6390_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|347aa|up_0|NC_021738.1_7499_8540_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NC_021738.1_8927_10169_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|100aa|down_1|NC_021738.1_10168_10468_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NC_021738.1_11171_11687_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NC_021738.1_11841_14670_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NC_021738.1_14761_16495_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NC_021738.1_16736_17669_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NC_021738.1_17670_18468_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NC_021738.1_18554_18776_+	NA	DinG|642aa|down_8|NC_021738.1_18958_20884_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NC_021738.1_20957_21323_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_000427275.1_ASM42727v1	NC_021738	Mannheimia haemolytica D171, complete sequence	2	433673-433970	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,PD-DExK,WYL	Type I-U,Type I-C, Type I-U?	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GGTGTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,35	0	0	NA	NA	NA:NA:NA	4,4,3	4	TypeI-U,TypeI-C,TypeI-U?	DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,PD-DExK,WYL	NA,NA|227aa|down_2|NC_021738.1_435650_436331_+	NA|269aa|up_9|NC_021738.1_421877_422684_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NC_021738.1_422685_423876_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NC_021738.1_423887_424640_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NC_021738.1_424865_426398_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NC_021738.1_426833_427244_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NC_021738.1_427313_428153_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NC_021738.1_428189_428873_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NC_021738.1_429140_430214_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NC_021738.1_430291_431794_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NC_021738.1_431947_433423_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NC_021738.1_434159_434453_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NC_021738.1_434519_435533_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NC_021738.1_435650_436331_+	NA	cas4|222aa|down_3|NC_021738.1_436432_437098_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NC_021738.1_437097_437961_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NC_021738.1_437970_439755_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NC_021738.1_439751_440429_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NC_021738.1_440666_442418_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NC_021738.1_442407_443463_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NC_021738.1_443593_445882_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_000427275.1_ASM42727v1	NC_021738	Mannheimia haemolytica D171, complete sequence	3	967434-967539	3	CRISPRCasFinder	no		DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,PD-DExK,WYL	Orphan	ACTGTCAGATTAGGTTTGATCTTCTACA	28	1	3	967462-967511|967462-967511|967462-967511	NC_021738.1_2168802-2168851|NC_021738.1_635223-635174|NC_021738.1_211327-211278	NA	1	1	Orphan	DinG,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,PD-DExK,WYL	NA,NA	NA|616aa|up_9|NC_021738.1_953255_955103_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|450aa|up_8|NC_021738.1_955289_956639_+	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|368aa|up_7|NC_021738.1_956657_957761_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|207aa|up_6|NC_021738.1_957823_958444_-	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]	NA|426aa|up_5|NC_021738.1_958453_959731_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|371aa|up_4|NC_021738.1_959736_960849_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|333aa|up_3|NC_021738.1_960951_961950_-	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|460aa|up_2|NC_021738.1_962117_963497_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|388aa|up_1|NC_021738.1_963613_964777_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|104aa|up_0|NC_021738.1_964887_965199_-	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|82aa|down_0|NC_021738.1_967745_967991_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|345aa|down_1|NC_021738.1_968003_969038_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|98aa|down_2|NC_021738.1_969086_969380_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|145aa|down_3|NC_021738.1_969372_969807_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|410aa|down_4|NC_021738.1_969918_971148_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_5|NC_021738.1_971158_971755_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|209aa|down_6|NC_021738.1_971756_972383_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|258aa|down_7|NC_021738.1_972382_973156_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|412aa|down_8|NC_021738.1_973148_974384_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|453aa|down_9|NC_021738.1_974386_975745_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional
