assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000438585.1_ASM43858v1	NC_021838	Listeria monocytogenes, complete sequence	1	335906-338583	1,1,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,DEDDh,cas5,cas7,cas8b2,cas6,RT,casR	Type II-C,Type II-A,Type II-B	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36,36	4	5	336074-336103|336669-336698|336669-336698|336735-336764|337990-338019	NC_021838.1_1449107-1449078|NC_021838.1_10815-10844|NC_021838.1_317796-317825|NC_021838.1_297582-297611|NC_021838.1_12870-12899	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	40,40,31,31	40	TypeII-C,TypeII-A,TypeII-B	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,DEDDh,cas5,cas7,cas8b2,cas6,RT,casR	NA|236aa|up_7|NC_021838.1_322413_323121_+,NA|202aa|up_6|NC_021838.1_323179_323785_+,NA|121aa|up_0|NC_021838.1_335017_335380_-,NA|160aa|down_4|NC_021838.1_345082_345562_-	NA|141aa|up_9|NC_021838.1_321535_321958_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|142aa|up_8|NC_021838.1_321973_322399_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|236aa|up_7|NC_021838.1_322413_323121_+	NA	NA|202aa|up_6|NC_021838.1_323179_323785_+	NA	NA|388aa|up_5|NC_021838.1_323847_325011_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|343aa|up_4|NC_021838.1_330739_331768_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NC_021838.1_332036_333563_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NC_021838.1_333600_334452_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NC_021838.1_334473_334896_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NC_021838.1_335017_335380_-	NA	csn2|221aa|down_0|NC_021838.1_338711_339374_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NC_021838.1_339363_339705_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NC_021838.1_339701_340568_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NC_021838.1_340568_344573_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NC_021838.1_345082_345562_-	NA	NA|131aa|down_5|NC_021838.1_345785_346178_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NC_021838.1_346199_346637_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NC_021838.1_346831_347578_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NC_021838.1_347583_348381_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NC_021838.1_348383_349250_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
GCF_000438585.1_ASM43858v1	NC_021838	Listeria monocytogenes, complete sequence	2	821705-821859	2	CRISPRCasFinder	no	cas3	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,DEDDh,cas5,cas7,cas8b2,cas6,RT,casR	Unclear	TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	50	0	0	NA	NA	NA	1	1	Unclear	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,DEDDh,cas5,cas7,cas8b2,cas6,RT,casR	NA,NA	NA|231aa|up_9|NC_021838.1_808947_809640_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NC_021838.1_809636_810845_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NC_021838.1_811528_811837_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NC_021838.1_811955_812264_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NC_021838.1_812650_814024_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NC_021838.1_814074_815031_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NC_021838.1_815074_815788_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NC_021838.1_816060_817014_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NC_021838.1_817256_818846_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NC_021838.1_819180_820713_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NC_021838.1_822867_823737_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NC_021838.1_823808_824132_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NC_021838.1_824264_824726_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NC_021838.1_824778_825111_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|240aa|down_4|NC_021838.1_825177_825897_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NC_021838.1_825929_826871_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NC_021838.1_827164_827788_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NC_021838.1_827877_828462_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NC_021838.1_828568_829129_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NC_021838.1_829242_832782_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_000438585.1_ASM43858v1	NC_021838	Listeria monocytogenes, complete sequence	3	2172636-2173963	3,2,3,4	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas3,cas5,cas7,cas8b2,cas6	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,DEDDh,cas5,cas7,cas8b2,cas6,RT,casR	Unclear	ATTTACATTTCATAATAAGTAGTTAAAAC,ATTTACATTTCATAATAAGTAGTTAAAAC,ATTTACATTTCATAATAAGTAGTTAAAAC,ATTTACATTTCATAATAAGTAGTTAAAAC	29,29,29,29	1	2	2173833-2173868|2173833-2173868	NC_021838.1_291638-291673|NC_021838.1_3020028-3020063	I-A:I-A:I-A:I-A	20,20,16,16	20	Unclear	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,DEDDh,cas5,cas7,cas8b2,cas6,RT,casR	NA|492aa|up_8|NC_021838.1_2162352_2163828_-,NA|148aa|up_5|NC_021838.1_2166644_2167088_-,NA	NA|499aa|up_9|NC_021838.1_2160863_2162360_-	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown]	NA|492aa|up_8|NC_021838.1_2162352_2163828_-	NA	NA|247aa|up_7|NC_021838.1_2164057_2164798_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|554aa|up_6|NC_021838.1_2164937_2166599_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|148aa|up_5|NC_021838.1_2166644_2167088_-	NA	NA|251aa|up_4|NC_021838.1_2167194_2167947_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|439aa|up_3|NC_021838.1_2168148_2169465_+	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|335aa|up_2|NC_021838.1_2169497_2170502_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|472aa|up_1|NC_021838.1_2170633_2172049_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|123aa|up_0|NC_021838.1_2172194_2172563_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	cas2|93aa|down_0|NC_021838.1_2174160_2174439_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas3|730aa|down_1|NC_021838.1_2174741_2176931_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|261aa|down_2|NC_021838.1_2176998_2177781_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|290aa|down_3|NC_021838.1_2177758_2178628_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|563aa|down_4|NC_021838.1_2178617_2180306_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|241aa|down_5|NC_021838.1_2180321_2181044_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|272aa|down_6|NC_021838.1_2181396_2182212_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|477aa|down_7|NC_021838.1_2182332_2183763_+	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|144aa|down_8|NC_021838.1_2183809_2184241_-	pfam00582, Usp, Universal stress protein family	NA|610aa|down_9|NC_021838.1_2184341_2186171_-	NF033186, internalin_K, class 1 internalin InlK
GCF_000438585.1_ASM43858v1	NC_021838	Listeria monocytogenes, complete sequence	4	2227324-2227908	3	CRT	no	RT	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,DEDDh,cas5,cas7,cas8b2,cas6,RT,casR	Unclear	CATATNAGTTACTGAACTNGTATCAAAATTACTTACATC	39	0	0	NA	NA	NA	7	7	Orphan	WYL,csa3,csn2,cas2,cas1,cas9,DinG,cas3,DEDDh,cas5,cas7,cas8b2,cas6,RT,casR	NA|89aa|up_4|NC_021838.1_2222884_2223151_-,NA|162aa|up_2|NC_021838.1_2223559_2224045_-,NA|158aa|up_1|NC_021838.1_2224064_2224538_-,NA	NA|567aa|up_9|NC_021838.1_2217170_2218871_-	COG4716, COG4716, Myosin-crossreactive antigen [Function unknown]	NA|187aa|up_8|NC_021838.1_2218980_2219541_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|120aa|up_7|NC_021838.1_2219866_2220226_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|276aa|up_6|NC_021838.1_2220253_2221081_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|321aa|up_5|NC_021838.1_2221842_2222805_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|89aa|up_4|NC_021838.1_2222884_2223151_-	NA	NA|102aa|up_3|NC_021838.1_2223226_2223532_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|162aa|up_2|NC_021838.1_2223559_2224045_-	NA	NA|158aa|up_1|NC_021838.1_2224064_2224538_-	NA	NA|586aa|up_0|NC_021838.1_2224603_2226361_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|694aa|down_0|NC_021838.1_2228700_2230782_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|513aa|down_1|NC_021838.1_2231045_2232584_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|517aa|down_2|NC_021838.1_2233219_2234770_-	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|367aa|down_3|NC_021838.1_2234762_2235863_-	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|428aa|down_4|NC_021838.1_2235863_2237147_-	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|532aa|down_5|NC_021838.1_2237280_2238876_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|316aa|down_6|NC_021838.1_2239031_2239979_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|383aa|down_7|NC_021838.1_2239983_2241132_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|720aa|down_8|NC_021838.1_2241128_2243288_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|252aa|down_9|NC_021838.1_2243404_2244160_+	pfam16160, DUF4866, Domain of unknown function (DUF4866)
