The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_021872	Lactobacillus reuteri TD1, complete sequence	2145445	950687	958752	2145445	tRNA	Staphylococcus_phage(33.33%)	8	NA	NA
WP_020843076.1|950687_950963_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	69.7	1.3e-24
WP_003674239.1|951099_952365_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_019254038.1|952490_953702_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	G3MAR3	Bacillus_virus	39.7	3.8e-36
WP_020843077.1|953703_955614_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	8.0e-57
WP_020843078.1|955631_956594_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	60.6	1.8e-113
WP_003666061.1|956609_957098_+	dihydrofolate reductase	NA	A0A1B2IBQ4	Erwinia_phage	40.8	4.3e-23
WP_003666062.1|957086_957731_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_019251613.1|957909_958752_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	34.1	8.0e-17
>prophage 2
NC_021872	Lactobacillus reuteri TD1, complete sequence	2145445	1285101	1339578	2145445	capsid,integrase,portal,plate,terminase,transposase	Lactobacillus_phage(29.41%)	78	1335103:1335118	1345083:1345098
WP_019253823.1|1285101_1286265_-|transposase	transposase	transposase	Q5ULQ4	Lactobacillus_virus	68.5	1.4e-152
WP_019253824.1|1286833_1287505_-	type II-A CRISPR-associated protein Csn2	NA	NA	NA	NA	NA
WP_019253825.1|1287501_1287807_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA	NA
WP_019253826.1|1287784_1288693_-	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA	NA
WP_080651460.1|1288809_1290228_+|transposase	ISLre2 family transposase	transposase	NA	NA	NA	NA
WP_019253310.1|1294822_1295302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019253311.1|1295503_1296331_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	62.6	2.6e-97
WP_019253312.1|1296333_1296666_-	MazG-like family protein	NA	M5AWB2	Nitratiruptor_phage	41.2	1.5e-14
WP_019253313.1|1296815_1297040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019253315.1|1298276_1298420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019253316.1|1298676_1299588_-	SH3 domain-containing protein	NA	Q9AZ81	Lactobacillus_prophage	56.7	1.9e-96
WP_019253317.1|1299589_1299946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253318.1|1299932_1300097_-	hypothetical protein	NA	A0A0A1ENA2	Lactobacillus_phage	54.9	4.2e-07
WP_019253319.1|1300101_1300479_-	hypothetical protein	NA	A0A0A1ENR5	Lactobacillus_phage	60.8	3.5e-41
WP_019253320.1|1300490_1300649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253321.1|1300641_1300899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144063117.1|1300912_1302484_-	hypothetical protein	NA	H7BVG0	unidentified_phage	37.3	1.1e-59
WP_019253323.1|1302502_1303264_-	hypothetical protein	NA	A8ATI3	Listeria_phage	30.4	6.3e-13
WP_019253324.1|1303260_1304487_-|plate	baseplate J/gp47 family protein	plate	A8ATI2	Listeria_phage	33.7	1.5e-56
WP_019253325.1|1304479_1304812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253326.1|1304798_1305164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253327.1|1305167_1306031_-	hypothetical protein	NA	A8ATH9	Listeria_phage	35.2	4.9e-38
WP_019253328.1|1306023_1306359_-	hypothetical protein	NA	D6PSZ5	Lactobacillus_phage	50.9	2.9e-26
WP_019253329.1|1306358_1306922_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1L2JY61	Aeribacillus_phage	36.9	8.8e-20
WP_019253330.1|1306924_1312063_-	hypothetical protein	NA	E9LUR1	Lactobacillus_phage	22.3	5.4e-07
WP_019253331.1|1312055_1312256_-	hypothetical protein	NA	A8ATH5	Listeria_phage	55.6	3.3e-06
WP_019253332.1|1312242_1312572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253333.1|1312656_1313055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253334.1|1313068_1314172_-	DUF3383 family protein	NA	A8ATH2	Listeria_phage	34.6	3.4e-52
WP_019253335.1|1314168_1314636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100068885.1|1314619_1314982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253337.1|1314999_1315434_-	hypothetical protein	NA	Q7Y5T8	Haemophilus_phage	34.8	7.8e-08
WP_019253338.1|1315442_1315787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253339.1|1315767_1315968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253340.1|1315967_1316936_-|capsid	N4-gp56 family major capsid protein	capsid	Q79S85	Temperate_phage	46.0	3.2e-62
WP_019253341.1|1316936_1317578_-	DUF4355 domain-containing protein	NA	NA	NA	NA	NA
WP_019253342.1|1317687_1317870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253343.1|1317866_1319282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253344.1|1319232_1320669_-|portal	phage portal protein	portal	A0A097PAT2	Streptococcus_pyogenes_phage	35.2	6.4e-67
WP_019253345.1|1320669_1321962_-|terminase	PBSX family phage terminase large subunit	terminase	Q6SE84	Lactobacillus_prophage	67.6	2.2e-167
WP_019253346.1|1321942_1322761_-|terminase	terminase small subunit	terminase	Q6SE85	Lactobacillus_prophage	56.1	5.1e-77
WP_019253347.1|1322825_1323044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253348.1|1323200_1323353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253349.1|1323993_1324461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253350.1|1324540_1324741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080651472.1|1324880_1325114_-	RusA family crossover junction endodeoxyribonuclease	NA	A8YQM5	Lactobacillus_phage	47.1	1.3e-09
WP_052317681.1|1325085_1325307_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_019253353.1|1325500_1325944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029507471.1|1325936_1326260_-	MazG-like family protein	NA	A0A2K9VC24	Lactobacillus_phage	50.5	1.1e-19
WP_019253355.1|1326463_1326718_-	hypothetical protein	NA	A0A0A1EL18	Lactobacillus_phage	51.2	1.7e-15
WP_019253356.1|1326717_1326930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253357.1|1326901_1327069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253358.1|1327068_1327650_-	HNH endonuclease	NA	E5DV63	Deep-sea_thermophilic_phage	53.6	7.4e-30
WP_019253359.1|1327636_1327873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253360.1|1327859_1328072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253361.1|1328084_1328339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253362.1|1328331_1328799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253363.1|1328798_1329260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253364.1|1329259_1329532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253365.1|1329521_1329695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253366.1|1329691_1330495_-	ATP-binding protein	NA	B4XYS7	Lactobacillus_phage	45.0	1.5e-52
WP_019253367.1|1330513_1331320_-	conserved phage C-terminal domain-containing protein	NA	Q8SDH3	Lactococcus_phage	48.4	1.8e-58
WP_019253368.1|1331332_1331707_-	single-stranded DNA-binding protein	NA	M1NRI2	Streptococcus_phage	65.2	2.1e-41
WP_019253369.1|1331699_1332362_-	hypothetical protein	NA	U5U4M2	Lactobacillus_phage	46.2	6.4e-54
WP_020843143.1|1332373_1333147_-	ERF family protein	NA	D6PSU1	Lactobacillus_phage	58.9	3.5e-43
WP_019253371.1|1333146_1333734_-	host-nuclease inhibitor Gam family protein	NA	NA	NA	NA	NA
WP_019253372.1|1333735_1333957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020843144.1|1334061_1334217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253374.1|1334206_1334389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253375.1|1334366_1334615_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019253376.1|1334629_1334836_-	hypothetical protein	NA	NA	NA	NA	NA
1335103:1335118	attL	ATCTGGATAGTTTTCT	NA	NA	NA	NA
WP_035166810.1|1335289_1336063_-	phage antirepressor KilAC domain-containing protein	NA	A0A2H4JCR9	uncultured_Caudovirales_phage	55.0	2.6e-75
WP_019253379.1|1336104_1336308_-	helix-turn-helix transcriptional regulator	NA	Q6SEA0	Lactobacillus_prophage	60.6	2.0e-14
WP_019253380.1|1336481_1336916_+	helix-turn-helix transcriptional regulator	NA	A0A2P1JU09	Anoxybacillus_phage	40.8	1.2e-19
WP_019253381.1|1336928_1337372_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2P1JU12	Anoxybacillus_phage	31.8	6.1e-08
WP_019253382.1|1337428_1338046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019251651.1|1338127_1338445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020843145.1|1338447_1339578_+|integrase	site-specific integrase	integrase	A0A1S5SA77	Streptococcus_phage	35.2	8.7e-51
1345083:1345098	attR	ATCTGGATAGTTTTCT	NA	NA	NA	NA
>prophage 3
NC_021872	Lactobacillus reuteri TD1, complete sequence	2145445	1623501	1633084	2145445	transposase	Paenibacillus_phage(33.33%)	8	NA	NA
WP_020843277.1|1623501_1625358_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	30.9	1.8e-77
WP_020843278.1|1625494_1625920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003665093.1|1626075_1626789_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	35.2	1.9e-27
WP_172395775.1|1626713_1627637_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	32.1	4.1e-22
WP_020843280.1|1627997_1629380_-	group II intron reverse transcriptase/maturase	NA	A0A0C5K882	ANMV-1_virus	26.4	1.1e-18
WP_019253112.1|1629867_1630362_-	thiol peroxidase	NA	NA	NA	NA	NA
WP_029507446.1|1630597_1631974_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	53.5	3.1e-135
WP_019253114.1|1632070_1633084_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.0	1.0e-18
>prophage 4
NC_021872	Lactobacillus reuteri TD1, complete sequence	2145445	1763620	1852392	2145445	protease,integrase,transposase	Paenibacillus_phage(28.57%)	54	1757328:1757344	1850173:1850189
1757328:1757344	attL	AGCCGCTAAATTATCTT	NA	NA	NA	NA
WP_019254178.1|1763620_1764589_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_019253671.1|1764717_1765263_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_003664702.1|1765280_1765949_-	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_019253672.1|1765941_1767285_-	Trk family potassium uptake protein	NA	NA	NA	NA	NA
WP_020843302.1|1767439_1769212_+	oleate hydratase	NA	NA	NA	NA	NA
WP_020843303.1|1769289_1770051_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_020843304.1|1770047_1771187_-	beta-glucanase	NA	NA	NA	NA	NA
WP_020843305.1|1771201_1772509_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_020843306.1|1772651_1773515_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_042229411.1|1774699_1775404_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_003664719.1|1775414_1776170_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.9	2.5e-14
WP_019253675.1|1776180_1777062_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_020843308.1|1777061_1777961_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_042229414.1|1777984_1778857_-	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019253677.1|1778982_1779693_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019251596.1|1779848_1780574_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	26.0	6.0e-13
WP_003664730.1|1780570_1781419_-	cobalt transporter	NA	NA	NA	NA	NA
WP_019253679.1|1781387_1782401_-	cobalt transporter CbiM	NA	NA	NA	NA	NA
WP_019253680.1|1782519_1783374_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_019253681.1|1783363_1783990_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_003664736.1|1784016_1784727_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_003664737.1|1784740_1785190_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019253682.1|1785273_1786995_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_003664739.1|1787010_1787388_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003664740.1|1787418_1787721_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_019253683.1|1787751_1788270_-	AmiS/UreI family transporter	NA	NA	NA	NA	NA
WP_019253684.1|1788310_1789519_-	ammonium transporter	NA	NA	NA	NA	NA
WP_042229419.1|1789783_1790179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019253686.1|1790342_1791356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003671533.1|1791470_1792001_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_020843311.1|1792046_1793651_-|transposase	IS1182 family transposase	transposase	A0A146ICT8	Staphylococcus_phage	41.4	5.3e-94
WP_019253688.1|1793817_1794873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003664757.1|1795074_1795632_-	elongation factor P	NA	NA	NA	NA	NA
WP_019253689.1|1795890_1797072_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_020842970.1|1797264_1798647_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	27.0	6.1e-30
WP_042229582.1|1799267_1805618_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA	NA
WP_020843313.1|1806128_1821035_-	YSIRK signal domain/LPXTG anchor domain surface protein	NA	NA	NA	NA	NA
WP_020843314.1|1821485_1835078_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_080651467.1|1835525_1836389_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020843316.1|1836504_1836981_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_020843317.1|1837368_1838055_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_019253697.1|1838078_1838693_-	sugar permease	NA	NA	NA	NA	NA
WP_020843318.1|1838815_1839871_-	zinc-dependent alcohol dehydrogenase family protein	NA	K7Z7U2	Megavirus	22.5	1.2e-06
WP_019253699.1|1840297_1840876_-	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_003665093.1|1842067_1842781_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	35.2	1.9e-27
WP_172395775.1|1842705_1843629_+|transposase	IS3 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	32.1	4.1e-22
WP_019253704.1|1843800_1844961_-	MFS transporter	NA	NA	NA	NA	NA
WP_020843320.1|1845343_1845922_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_020843321.1|1846090_1846963_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_020843322.1|1847372_1847639_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_020843323.1|1847814_1850322_-	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA	NA
1850173:1850189	attR	AGCCGCTAAATTATCTT	NA	NA	NA	NA
WP_020843324.1|1850323_1850728_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_003671431.1|1850731_1851019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020843326.1|1851423_1852392_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
