The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	555902	563533	2994661		Streptococcus_phage(87.5%)	9	NA	NA
WP_000420682.1|555902_556217_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|556232_556619_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|556647_558033_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|558035_558188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|558210_559416_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_002286940.1|560199_562110_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_032509114.1|562213_562438_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	97.1	8.5e-27
WP_000342539.1|562554_563052_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|563026_563533_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
>prophage 2
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	571818	578861	2994661	integrase	Streptococcus_phage(100.0%)	8	567239:567253	579629:579643
567239:567253	attL	TGTAACAAAAGAAGA	NA	NA	NA	NA
WP_001224318.1|571818_572751_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|572995_573112_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000336323.1|575164_575332_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_020944828.1|575391_575745_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	99.1	1.7e-58
WP_000804885.1|576248_576671_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|576667_576898_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|577358_577562_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_010785527.1|577643_578861_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.8	8.3e-233
579629:579643	attR	TGTAACAAAAGAAGA	NA	NA	NA	NA
>prophage 3
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	701280	709752	2994661		Streptococcus_phage(66.67%)	9	NA	NA
WP_002294039.1|701280_701925_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292340.1|701939_702269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288071.1|702282_703221_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002288073.1|703256_704081_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288076.1|704073_704421_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288078.1|704489_705362_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002294035.1|705470_706592_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288081.1|706645_707248_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002288083.1|707562_709752_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
>prophage 4
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	776917	863318	2994661	portal,holin,terminase,integrase,head,tRNA,transposase,protease,capsid,tail	Enterococcus_phage(33.33%)	96	775324:775338	781538:781552
775324:775338	attL	ACATTCTTACAAAAA	NA	NA	NA	NA
WP_086953915.1|776917_778257_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_002317264.1|778565_778997_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002317263.1|779003_779237_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002317262.1|779158_779401_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033624090.1|779657_779861_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	82.1	2.5e-25
WP_002317260.1|779944_781138_+|integrase	site-specific integrase	integrase	A0A1S5SEW7	Streptococcus_phage	67.8	6.4e-153
WP_002288107.1|781673_782357_+	O-methyltransferase	NA	NA	NA	NA	NA
781538:781552	attR	TTTTTGTAAGAATGT	NA	NA	NA	NA
WP_002288109.1|782898_783258_+	DUF1304 family protein	NA	NA	NA	NA	NA
WP_002294025.1|783380_785012_+	SulP family inorganic anion transporter	NA	NA	NA	NA	NA
WP_002289449.1|785073_785715_-	uracil-DNA glycosylase	NA	NA	NA	NA	NA
WP_002289450.1|785996_786305_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_002289451.1|786331_786676_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_002289452.1|786688_786982_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_002305409.1|788233_788545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321996.1|788597_788993_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002305405.1|789028_789373_-	helix-turn-helix transcriptional regulator	NA	A0A126GGL0	Streptococcus_phage	52.6	1.2e-24
WP_002349274.1|789673_789895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305403.1|790021_790798_+	hypothetical protein	NA	B2ZYU5	Staphylococcus_phage	54.8	2.8e-72
WP_082254649.1|790794_790989_+	helix-turn-helix transcriptional regulator	NA	D2IZW2	Enterococcus_phage	51.9	2.6e-08
WP_002349273.1|790990_791275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305400.1|791295_791484_+	hypothetical protein	NA	D2IZW5	Enterococcus_phage	60.3	7.4e-08
WP_020944848.1|791808_792150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020944849.1|792142_792889_+	DUF1071 domain-containing protein	NA	A0A1X9IGE5	Lactococcus_phage	46.6	3.2e-41
WP_002335419.1|792894_793581_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.5	1.1e-88
WP_002305397.1|793583_794414_+	replication protein	NA	C9E2N2	Enterococcus_phage	43.9	1.5e-52
WP_002305396.1|794430_795282_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	28.7	6.2e-25
WP_002305394.1|795278_795638_+	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	48.3	3.1e-18
WP_002287522.1|795799_796204_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287525.1|796220_797369_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002290675.1|797543_797705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305393.1|797701_798007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286550.1|798006_798363_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	3.1e-10
WP_002296604.1|798322_798568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305391.1|798752_799220_+	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	28.5	2.4e-07
WP_002349267.1|799494_799731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305389.1|799754_800096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020944850.1|800088_800268_-	YegP family protein	NA	NA	NA	NA	NA
WP_002305387.1|800489_801137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305386.1|801396_801741_+	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	58.1	1.0e-26
WP_002296599.1|801745_802027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286538.1|802129_802444_+|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
WP_002286530.1|804134_805313_+|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.4	5.4e-80
WP_020944852.1|805275_805962_+|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	40.2	6.1e-31
WP_002318250.1|805961_807122_+|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.4	2.7e-100
WP_020944853.1|807131_808007_+	hypothetical protein	NA	D2IYX3	Enterococcus_phage	73.2	4.7e-129
WP_020944854.1|808003_808315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020944855.1|808304_808658_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_020944856.1|808647_809049_+	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	34.1	3.9e-14
WP_002286516.1|809041_809446_+	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
WP_002286512.1|809457_810066_+	hypothetical protein	NA	Q8W5Z9	Listeria_phage	41.1	3.0e-34
WP_002286510.1|810085_810448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305377.1|810450_810633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305374.1|810649_814069_+|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	41.5	8.7e-78
WP_002305373.1|814119_814857_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002305372.1|814866_817158_+	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	30.2	1.7e-90
WP_002305370.1|817181_819272_+	hypothetical protein	NA	A0A249XZH9	Enterococcus_phage	49.6	9.6e-88
WP_020944857.1|819434_819884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296594.1|819885_820023_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002286683.1|820351_820576_+|holin	holin	holin	NA	NA	NA	NA
WP_002286484.1|820572_821598_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	2.1e-64
WP_002286473.1|825437_825809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020944861.1|825844_826147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305361.1|826242_827037_-	DUF4428 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	32.9	4.3e-12
WP_002289453.1|827655_830490_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002289455.1|830680_831172_+	PTS transporter subunit IIB	NA	NA	NA	NA	NA
WP_002289456.1|831274_832264_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
WP_002294546.1|832296_833100_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002286668.1|834116_834491_+	DUF956 family protein	NA	NA	NA	NA	NA
WP_002286666.1|834628_834874_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002286665.1|835045_836110_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_002286664.1|836355_836781_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002286662.1|836773_837223_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_002286660.1|837319_838174_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.7	6.8e-40
WP_002286658.1|838174_839512_+	exodeoxyribonuclease VII large subunit	NA	L7RDW5	Acanthamoeba_polyphaga_moumouvirus	29.5	6.7e-26
WP_002286657.1|839516_839741_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_002286656.1|839742_840633_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_002286655.1|840641_841460_+	TlyA family RNA methyltransferase	NA	NA	NA	NA	NA
WP_002286653.1|841566_842016_+	arginine repressor	NA	NA	NA	NA	NA
WP_002286651.1|842033_843716_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_002291876.1|843770_843887_-	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
WP_002286649.1|843959_844916_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002286647.1|845086_845455_+	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
WP_002286645.1|845624_846056_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_002286642.1|846076_847036_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_002303009.1|847441_849634_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_002286639.1|849659_850622_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_002286638.1|850635_851997_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_002286637.1|852022_853111_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_002286633.1|853125_854346_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_002286631.1|854501_855827_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_002286629.1|855849_857091_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002286628.1|857107_857785_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_073120020.1|858411_858699_+	YggT family protein	NA	NA	NA	NA	NA
WP_002286624.1|858747_859530_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_002286622.1|859550_860258_+	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_002286621.1|860519_863318_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	1.6e-74
>prophage 5
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	877175	910779	2994661	portal,holin,terminase,head,integrase,protease,capsid,plate,tail	Bacillus_phage(18.52%)	51	871977:871991	879042:879056
871977:871991	attL	AAATTCCAGAAGATG	NA	NA	NA	NA
WP_002286587.1|877175_878315_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.6e-95
WP_002303012.1|878613_879249_-	hypothetical protein	NA	NA	NA	NA	NA
879042:879056	attR	CATCTTCTGGAATTT	NA	NA	NA	NA
WP_002296616.1|879361_879997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303013.1|880030_880492_-	DUF4429 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	34.8	4.5e-06
WP_020944866.1|880600_881050_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002296612.1|881067_881388_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	40.2	2.0e-13
WP_002290310.1|881686_882463_+	phage antirepressor protein	NA	A0A1Q1PVU2	Staphylococcus_phage	53.8	1.1e-73
WP_002296611.1|882477_882681_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002286573.1|882696_883035_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_002296610.1|883021_883201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286568.1|883243_883714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286562.1|883800_884499_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.7e-25
WP_002286559.1|884676_885018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286557.1|885010_885682_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_002286553.1|885687_886374_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
WP_002286552.1|886376_887126_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_002304429.1|887137_887407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303016.1|887569_887869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303017.1|887868_888171_+	hypothetical protein	NA	D2IZY1	Enterococcus_phage	70.7	2.8e-33
WP_002303018.1|888210_888576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303020.1|889202_889391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002347162.1|889398_889593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303022.1|889625_889838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303023.1|889962_890166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303024.1|890162_890435_+	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	61.6	5.5e-20
WP_002303025.1|890435_890621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123838300.1|890607_890955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303026.1|890914_891391_+	DUF1492 domain-containing protein	NA	A0A2H4JFW6	uncultured_Caudovirales_phage	50.8	2.2e-27
WP_002349221.1|891536_892265_-	DUF4145 domain-containing protein	NA	A0A1X9I5M7	Streptococcus_phage	52.4	1.2e-58
WP_002303029.1|892312_892591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303030.1|892592_892979_+	hypothetical protein	NA	A0A1B1P7N8	Bacillus_phage	36.7	1.9e-10
WP_002304435.1|892975_893356_+	HNH endonuclease	NA	A0A1B1P7N1	Bacillus_phage	64.0	4.7e-41
WP_002303032.1|893467_893920_+	hypothetical protein	NA	A0A2H4JFK0	uncultured_Caudovirales_phage	66.2	6.8e-47
WP_002303033.1|893916_895644_+|terminase	terminase large subunit	terminase	A0A2H4JDG5	uncultured_Caudovirales_phage	73.3	6.9e-265
WP_002304437.1|895707_896895_+|portal	phage portal protein	portal	A0A1B2APW5	Phage_Wrath	65.5	1.3e-142
WP_002349220.1|896860_897436_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1B2APW1	Phage_Wrath	71.7	3.6e-69
WP_002303037.1|897448_898813_+|capsid	phage major capsid protein	capsid	A0A1B2APY9	Phage_Wrath	69.1	2.2e-125
WP_002303039.1|898814_899096_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1C8E967	Bacillus_phage	62.7	4.7e-22
WP_002303041.1|899073_899400_+|head	phage head closure protein	head	A0A0N7IRA3	Lactobacillus_phage	53.4	2.9e-23
WP_002303043.1|899389_899728_+	hypothetical protein	NA	A0A1B1P7P2	Bacillus_phage	45.9	9.6e-22
WP_002303045.1|899717_900083_+	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_002303047.1|900089_900716_+|tail	tail protein	tail	A0A2H4JGN2	uncultured_Caudovirales_phage	34.5	5.7e-28
WP_002303049.1|900715_901180_+	hypothetical protein	NA	A0A2H4J956	uncultured_Caudovirales_phage	38.9	1.4e-15
WP_002303051.1|901374_903684_+|tail	phage tail tape measure protein	tail	Q8W5Z7	Listeria_phage	50.1	5.5e-84
WP_002349218.1|903695_904400_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002347164.1|904396_907156_+	CHAP domain-containing protein	NA	D7RWE0	Brochothrix_phage	55.7	1.6e-50
WP_002332773.1|907168_908077_+|plate	phage baseplate upper protein	plate	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
WP_002347165.1|909657_910089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303475.1|910090_910228_+	XkdX family protein	NA	NA	NA	NA	NA
WP_020944870.1|910264_910558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286683.1|910554_910779_+|holin	holin	holin	NA	NA	NA	NA
>prophage 6
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	1239613	1248759	2994661	transposase	Lysinibacillus_phage(16.67%)	9	NA	NA
WP_002297218.1|1239613_1240909_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002297115.1|1241173_1241551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|1241806_1242535_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|1242534_1242789_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288017.1|1242790_1243462_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002288015.1|1243462_1245685_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
WP_002288013.1|1245669_1247109_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002321731.1|1247140_1248184_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002288010.1|1248180_1248759_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 7
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	1819342	1870111	2994661	tRNA,transposase,integrase	Streptococcus_phage(30.0%)	49	1856818:1856833	1867552:1867567
WP_020944941.1|1819342_1820302_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.8e-10
WP_002288573.1|1823023_1823410_+	YxeA family protein	NA	NA	NA	NA	NA
WP_002288574.1|1823717_1825064_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002288575.1|1825175_1826525_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002288576.1|1826641_1827895_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	7.7e-24
WP_002288577.1|1827965_1828451_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002305727.1|1828473_1829232_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.4	1.9e-25
WP_002288581.1|1829247_1830426_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	3.9e-102
WP_002303943.1|1830655_1832776_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.0	8.2e-220
WP_002296838.1|1834540_1835266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288586.1|1835255_1835765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288588.1|1835834_1837283_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
WP_002288590.1|1837282_1837999_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_002288595.1|1837979_1838330_-	SdpI family protein	NA	NA	NA	NA	NA
WP_002288592.1|1838473_1839247_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002297218.1|1839911_1841207_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002302293.1|1841525_1841828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002323892.1|1842971_1843286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|1843402_1844581_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002321266.1|1844917_1845157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289617.1|1845518_1845779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289618.1|1845963_1846461_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002289619.1|1846590_1847301_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002289620.1|1847313_1848978_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002300930.1|1849182_1849845_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002303949.1|1849854_1850670_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002288989.1|1850928_1851372_-	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA	NA
WP_002321036.1|1851505_1851844_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288986.1|1851831_1852209_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288985.1|1852432_1853626_+	MFS transporter	NA	NA	NA	NA	NA
WP_002288984.1|1853791_1854214_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002321037.1|1854607_1854802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288983.1|1854798_1855293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288982.1|1855454_1856627_-	class C sortase	NA	NA	NA	NA	NA
1856818:1856833	attL	TTTGTTTCCAATAGTT	NA	NA	NA	NA
WP_002288981.1|1856832_1857648_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002288979.1|1857797_1858244_-	cell wall anchor	NA	NA	NA	NA	NA
WP_158003446.1|1858240_1859245_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_002352916.1|1859284_1859614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305732.1|1859739_1862067_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002288970.1|1862908_1863202_-	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002288969.1|1863604_1864783_-|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	31.1	1.4e-30
WP_002300928.1|1864886_1865201_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002288966.1|1865307_1865523_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288964.1|1865822_1866065_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002288962.1|1866051_1866480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303202.1|1866631_1868179_-|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
1867552:1867567	attR	TTTGTTTCCAATAGTT	NA	NA	NA	NA
WP_002287659.1|1868280_1868634_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_002285758.1|1868623_1868818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094932120.1|1868948_1870111_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	2.7e-79
>prophage 8
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	1904766	1911040	2994661		Streptococcus_phage(100.0%)	9	NA	NA
WP_002288934.1|1904766_1905267_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.6	7.0e-53
WP_002298822.1|1905279_1905501_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	4.5e-28
WP_002297187.1|1905505_1905625_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002286934.1|1905639_1906824_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	60.8	1.9e-141
WP_002286932.1|1907359_1908502_-	DNA cytosine methyltransferase	NA	A0A1S5SEK0	Streptococcus_phage	62.1	1.7e-126
WP_002349191.1|1908561_1909914_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	64.4	3.8e-162
WP_002286928.1|1909984_1910329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286926.1|1910338_1910713_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	62.9	1.1e-34
WP_002286925.1|1910725_1911040_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.7e-25
>prophage 9
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	2165149	2227989	2994661	holin,tRNA,transposase,tail	Enterococcus_phage(25.0%)	60	NA	NA
WP_002303350.1|2165149_2166109_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002295061.1|2166329_2167433_-	L-lactate oxidase	NA	NA	NA	NA	NA
WP_002295059.1|2167654_2168125_-	DUF4809 family protein	NA	NA	NA	NA	NA
WP_000202380.1|2168381_2169701_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002302982.1|2170141_2171782_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002302984.1|2171935_2173258_+	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_002295053.1|2173319_2173751_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002302985.1|2173814_2174651_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_002295049.1|2174840_2175143_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_002290886.1|2175168_2175600_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002290885.1|2175596_2175863_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_002290883.1|2176116_2176842_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_002289867.1|2177394_2178147_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_002289868.1|2178162_2178642_+	threonine/serine exporter	NA	NA	NA	NA	NA
WP_002296509.1|2178892_2180473_-	ABC transporter	NA	NA	NA	NA	NA
WP_020944966.1|2180465_2181209_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.9	3.6e-29
WP_002287742.1|2181384_2182161_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002287743.1|2182408_2183245_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_002287744.1|2183255_2184185_-	permease	NA	NA	NA	NA	NA
WP_002287745.1|2184376_2184730_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002287746.1|2184803_2185460_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002287747.1|2185685_2187620_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.9	1.1e-58
WP_002321414.1|2187705_2188929_-	glucuronyl hydrolase	NA	NA	NA	NA	NA
WP_002321415.1|2188922_2190821_-	DUF2264 domain-containing protein	NA	NA	NA	NA	NA
WP_002287753.1|2190814_2191933_-	glycosyl hydrolase family 88	NA	NA	NA	NA	NA
WP_002302991.1|2192015_2192849_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002287755.1|2192841_2193759_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002287756.1|2193781_2193961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287757.1|2193985_2195110_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002296511.1|2195292_2196201_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002287759.1|2196341_2197955_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_020944967.1|2198605_2199559_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002289406.1|2199592_2200822_-	GTPase HflX	NA	NA	NA	NA	NA
WP_002289405.1|2200823_2201741_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002289404.1|2201744_2202482_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	40.0	2.3e-12
WP_002289403.1|2202572_2203100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289402.1|2203279_2203873_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.6	8.9e-55
WP_002289401.1|2203976_2204462_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_002289400.1|2204904_2206665_-	multidrug efflux ABC transporter subunit EfrB	NA	W8CYL7	Bacillus_phage	28.6	2.5e-52
WP_002296290.1|2206661_2208392_-	multidrug efflux ABC transporter subunit EfrA	NA	W8CYL7	Bacillus_phage	27.6	2.1e-43
WP_002287947.1|2208784_2208997_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_020944968.1|2208998_2210678_+	ribonuclease J	NA	NA	NA	NA	NA
WP_002294067.1|2210931_2211132_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	71.2	3.7e-21
WP_002347086.1|2212206_2212605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305550.1|2212597_2213050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020944969.1|2213036_2213444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042959743.1|2213422_2213725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020944970.1|2214529_2214736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302755.1|2214719_2215928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302753.1|2216042_2217053_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.8e-61
WP_002349260.1|2217049_2217439_-|holin	phage holin family protein	holin	F0PIJ6	Enterococcus_phage	69.7	9.0e-40
WP_002302750.1|2217538_2217679_-	XkdX family protein	NA	A0A2H4JD72	uncultured_Caudovirales_phage	54.8	1.1e-08
WP_002332774.1|2217671_2218019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305897.1|2218032_2218527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002319918.1|2218526_2218976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303306.1|2218979_2219600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347081.1|2220520_2223283_-	CHAP domain-containing protein	NA	Q9AZX5	Lactococcus_phage	39.1	6.0e-138
WP_002303299.1|2223279_2224020_-|tail	tail protein	tail	NA	NA	NA	NA
WP_002303297.1|2227039_2227381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303295.1|2227380_2227989_-|tail	tail protein	tail	NA	NA	NA	NA
>prophage 10
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	2232659	2251254	2994661	portal,terminase	Enterococcus_phage(44.44%)	25	NA	NA
WP_002303292.1|2232659_2234189_-|portal	phage portal protein	portal	A0A0S2MVB2	Bacillus_phage	25.0	1.3e-28
WP_002298064.1|2234200_2235616_-	hypothetical protein	NA	C9E2I7	Enterococcus_phage	79.7	1.0e-218
WP_002303291.1|2235608_2236442_-|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	68.8	1.5e-79
WP_002303289.1|2237046_2237307_-	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	51.1	7.9e-16
WP_002303288.1|2238256_2238643_-	hypothetical protein	NA	O34053	Streptococcus_phage	53.5	1.6e-28
WP_002303286.1|2238655_2239069_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	5.6e-56
WP_002303285.1|2239145_2239442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303283.1|2239438_2239642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303282.1|2239648_2239879_-	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	52.1	1.6e-12
WP_002303281.1|2239875_2240259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303280.1|2240255_2240798_-	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	40.7	3.9e-17
WP_002303279.1|2240794_2241265_-	hypothetical protein	NA	A0A0A7RWK2	Clostridium_phage	33.8	9.6e-12
WP_002305847.1|2241266_2241449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002317474.1|2241441_2241759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002299339.1|2241755_2242607_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.2	2.3e-27
WP_002303278.1|2242621_2243422_-	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	54.5	8.9e-58
WP_002303277.1|2243464_2244355_-	hypothetical protein	NA	D2IYT9	Enterococcus_phage	84.5	6.2e-137
WP_002303275.1|2244356_2245298_-	endonuclease	NA	D2IZK1	Enterococcus_phage	78.9	2.7e-146
WP_002303273.1|2245530_2245866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002299325.1|2246132_2246357_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	81.1	2.2e-27
WP_002299038.1|2246665_2246821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304464.1|2246892_2247123_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	49.3	4.4e-10
WP_002303266.1|2247290_2247557_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JP54	Staphylococcus_phage	52.7	5.4e-12
WP_002303264.1|2248546_2249836_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	74.0	5.6e-46
WP_002303263.1|2249901_2251254_+	recombinase family protein	NA	D2IZV7	Enterococcus_phage	55.3	1.7e-133
>prophage 11
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	2339125	2347384	2994661	tRNA,transposase	Bacillus_virus(33.33%)	7	NA	NA
WP_002297185.1|2339125_2340421_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002289325.1|2340590_2342600_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.3	1.4e-96
WP_002289337.1|2342867_2343146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289327.1|2343242_2344064_+	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	32.8	2.7e-25
WP_002289328.1|2344348_2345359_-	helix-turn-helix domain-containing protein	NA	A0A288TXV8	Enterococcus_phage	40.8	2.8e-56
WP_002289330.1|2345370_2346324_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	33.7	2.2e-18
WP_002289332.1|2346313_2347384_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.5e-20
>prophage 12
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	2435922	2503463	2994661	portal,holin,terminase,head,integrase,bacteriocin,transposase,protease,capsid,plate,tail	Enterococcus_phage(31.71%)	73	2447984:2448043	2491648:2491708
WP_002288860.1|2435922_2436585_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002303458.1|2436660_2437953_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002303461.1|2438122_2438752_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_002288854.1|2438854_2439664_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	3.1e-34
WP_002305460.1|2439718_2440588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288852.1|2440588_2441905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294131.1|2441901_2443737_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	5.2e-37
WP_002288850.1|2443741_2444446_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
WP_002294132.1|2444635_2445496_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.4	4.6e-12
WP_002322652.1|2445482_2446052_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
2447984:2448043	attL	ACTCTTAATCAGCGGGTCGCGGGTTCGAGCCCCTCACGGCCCATTGGGTGCCAAACCCAC	NA	NA	NA	NA
WP_002347076.1|2448551_2448857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286473.1|2448892_2449264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296902.1|2449265_2449667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286474.1|2449680_2450088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087046766.1|2451010_2452173_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002302755.1|2453331_2454540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020944989.1|2454654_2455671_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.7	9.8e-62
WP_002302122.1|2455681_2455879_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	85.9	7.8e-24
WP_002332427.1|2455894_2456137_-|holin	holin	holin	D2J075	Enterococcus_phage	63.3	1.2e-21
WP_002332428.1|2456171_2456309_-	XkdX family protein	NA	NA	NA	NA	NA
WP_002332429.1|2456310_2456757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010729422.1|2456919_2458980_-|plate	BppU family phage baseplate upper protein	plate	A0A249XZH9	Enterococcus_phage	44.9	1.7e-65
WP_002290629.1|2458997_2459822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002332431.1|2459825_2460875_-	hypothetical protein	NA	Q5K5I4	Oenococcus_phage	27.9	1.9e-31
WP_002350711.1|2460871_2461744_-|plate	phage baseplate protein	plate	NA	NA	NA	NA
WP_002350712.1|2461744_2465593_-	tape measure protein	NA	A0A0M5M3L4	Enterococcus_phage	76.0	0.0e+00
WP_002290636.1|2465592_2465784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002329391.1|2465807_2466119_-	hypothetical protein	NA	A0A0S2MY76	Enterococcus_phage	44.8	4.0e-14
WP_002332434.1|2466243_2466804_-|tail	phi13 family phage major tail protein	tail	V5UQL2	Enterococcus_phage	46.2	3.4e-40
WP_002329393.1|2466819_2467191_-	hypothetical protein	NA	A0A060ANH4	Enterococcus_phage	46.2	2.5e-23
WP_002350714.1|2467187_2467583_-	hypothetical protein	NA	C0LZZ2	Enterococcus_phage	44.5	4.3e-21
WP_002342516.1|2467579_2467915_-|head	phage head closure protein	head	A0A249XUC8	Enterococcus_phage	44.1	2.2e-18
WP_002350715.1|2467918_2468245_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_020944990.1|2468259_2469453_-|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	55.4	1.5e-114
WP_002350717.1|2469449_2470127_-|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	51.0	4.9e-49
WP_002350718.1|2470161_2471382_-|portal	phage portal protein	portal	A0A0U3SQF0	Bacillus_phage	38.5	1.2e-61
WP_010729418.1|2472936_2473698_-	GIY-YIG nuclease family protein	NA	A0A220BXN1	Staphylococcus_phage	45.9	7.9e-40
WP_010729417.1|2473790_2473949_+	ribbon-helix-helix domain-containing protein	NA	A0A0A7RUX5	Clostridium_phage	65.9	5.3e-07
WP_002290653.1|2474415_2474937_-|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	34.2	1.1e-16
WP_002350721.1|2475038_2475203_+	YjzC family protein	NA	A0A0A7RTS6	Clostridium_phage	69.8	3.6e-14
WP_016922443.1|2475359_2475677_-	HNH endonuclease	NA	A0A1B1P8D2	Bacillus_phage	39.8	2.0e-13
WP_002304479.1|2477419_2477833_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.1e-56
WP_012197617.1|2478319_2478607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020944994.1|2478736_2479006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012197625.1|2479002_2479533_-	DUF1642 domain-containing protein	NA	A0A059T7S4	Listeria_phage	37.2	1.8e-11
WP_020944995.1|2479525_2479840_-	MazG nucleotide pyrophosphohydrolase	NA	D2IZY1	Enterococcus_phage	73.7	1.6e-34
WP_002304472.1|2479978_2480794_-	prohibitin family protein	NA	A0A288TXV9	Enterococcus_phage	69.4	1.8e-82
WP_042959744.1|2480790_2481117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323911.1|2481113_2481275_-	antitoxin	NA	NA	NA	NA	NA
WP_002329414.1|2481271_2481589_-	VRR-NUC domain-containing protein	NA	A0A1P8VVL5	Streptococcus_phage	61.0	7.6e-29
WP_002347054.1|2481903_2484240_-	phage/plasmid primase P4 family domain-containing protein	NA	Q9T0Y1	Lactobacillus_phage	50.7	4.2e-225
WP_002347055.1|2484239_2484746_-	DUF669 domain-containing protein	NA	A8ATF2	Listeria_phage	46.4	6.0e-36
WP_010729410.1|2484763_2486287_-	DEAD/DEAH box helicase	NA	Q9T0Y3	Lactobacillus_phage	48.1	6.1e-108
WP_002347057.1|2486258_2486999_-	AAA family ATPase	NA	A0A1X9I651	Streptococcus_phage	54.8	6.9e-65
WP_002347058.1|2487019_2487499_-	siphovirus Gp157 family protein	NA	E5DV79	Deep-sea_thermophilic_phage	49.0	3.1e-34
WP_002350675.1|2487431_2487749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347060.1|2487960_2488212_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002323901.1|2488225_2488417_-	hypothetical protein	NA	Q9T1I7	Lactobacillus_phage	35.5	1.4e-06
WP_002347061.1|2488709_2489030_+	helix-turn-helix transcriptional regulator	NA	A0A182BQC8	Lactococcus_phage	49.1	1.2e-18
WP_134771589.1|2489038_2489530_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002329429.1|2489551_2490187_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	52.6	5.1e-32
WP_002347064.1|2490304_2491516_+|integrase	site-specific integrase	integrase	A0A0B5CTW8	Listeria_phage	30.6	1.4e-35
WP_002294609.1|2492185_2492572_-	DUF4064 domain-containing protein	NA	NA	NA	NA	NA
2491648:2491708	attR	ACTCTTAATCAGCGGGTCGCGGGTTCGAGCCCCTCACGGCCCATTGGGTGCCAAACCCACG	NA	NA	NA	NA
WP_002294608.1|2492568_2493090_-	RDD family protein	NA	NA	NA	NA	NA
WP_002294607.1|2493091_2494126_-	signal peptide peptidase SppA	NA	A0A1C9LW82	Vibrio_phage	29.2	6.6e-13
WP_002348772.1|2494158_2495574_-	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_002303464.1|2495542_2497696_-	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	27.8	7.0e-41
WP_002303465.1|2497953_2498190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294603.1|2498208_2498424_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000202380.1|2499940_2501260_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002348775.1|2501578_2502826_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_002294600.1|2502901_2503048_-|bacteriocin	EntF family bacteriocin induction factor	bacteriocin	NA	NA	NA	NA
WP_002305452.1|2503151_2503463_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
>prophage 13
NC_021994	Enterococcus faecium Aus0085, complete sequence	2994661	2812492	2921023	2994661	tRNA,transposase,integrase	Streptococcus_phage(56.67%)	93	2827141:2827156	2923011:2923025
WP_002302711.1|2812492_2813476_-|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
WP_002287492.1|2813890_2814661_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002303703.1|2814653_2815589_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.1	8.0e-26
WP_002303701.1|2815904_2817554_-	DNA mismatch repair protein MutS	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	28.1	2.4e-17
WP_002302520.1|2817670_2820274_-	glycosyl hydrolase family 38	NA	NA	NA	NA	NA
WP_002305530.1|2820285_2821335_-	PTS fructose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002302516.1|2821360_2821675_-	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
WP_002302514.1|2821690_2822137_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_002305529.1|2822137_2824114_-	transcription antiterminator	NA	NA	NA	NA	NA
WP_002303699.1|2824271_2825168_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002303698.1|2825160_2825841_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	1.4e-24
WP_002303697.1|2825841_2826624_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002287502.1|2826616_2827534_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.8	4.6e-42
2827141:2827156	attL	TCTTTGCTTTCTTTTT	NA	NA	NA	NA
WP_002305527.1|2827697_2828021_-	hypothetical protein	NA	NA	NA	NA	NA
2827141:2827156	attL	TCTTTGCTTTCTTTTT	NA	NA	NA	NA
WP_002305526.1|2828808_2832036_+	fibrinogen-binding MSCRAMM adhesin Fss3	NA	NA	NA	NA	NA
WP_002303694.1|2832147_2832462_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	1.9e-24
WP_002302502.1|2832474_2832849_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	63.9	6.4e-35
WP_002302500.1|2832858_2833203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002346767.1|2833271_2834288_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	56.6	5.7e-102
WP_020945017.1|2836091_2837411_-|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.5	5.3e-209
WP_134771590.1|2837840_2838440_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_096929203.1|2838565_2838922_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	84.6	1.3e-45
WP_002302494.1|2838966_2840109_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SEK0	Streptococcus_phage	62.4	1.6e-129
WP_002305523.1|2840643_2841828_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	63.2	8.3e-145
WP_002330678.1|2841842_2841938_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002286940.1|2842707_2844618_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.1e-37
WP_033657400.1|2844721_2844946_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.8	8.8e-24
WP_002302474.1|2844958_2845462_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.4	2.0e-52
WP_002302472.1|2845587_2846625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303688.1|2846639_2848337_+	ThiF family protein	NA	NA	NA	NA	NA
WP_002302466.1|2848329_2848791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002349055.1|2848803_2849046_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000202380.1|2849197_2850517_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002302462.1|2851385_2851775_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	67.5	5.1e-43
WP_002302460.1|2851761_2854209_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.4	0.0e+00
WP_002302459.1|2854213_2856322_+	FUSC family protein	NA	A0A1S5SF30	Streptococcus_phage	60.9	4.5e-178
WP_002302457.1|2856318_2857323_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	64.8	5.6e-118
WP_002302456.1|2857341_2858253_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	41.1	3.0e-62
WP_002297343.1|2858914_2859130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094029191.1|2859388_2859556_-|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	75.0	4.4e-12
WP_002303678.1|2861887_2862559_-	hypothetical protein	NA	A0A0C5K996	Enterococcus_phage	33.9	4.1e-08
WP_010727027.1|2862907_2864359_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A075BS18	Microcystis_phage	46.1	1.9e-18
WP_002303673.1|2864470_2865814_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_020945019.1|2865947_2871146_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_002303670.1|2871762_2872068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303669.1|2872212_2873418_-	YSIRK-targeted surface antigen transcriptional regulator	NA	NA	NA	NA	NA
WP_002302419.1|2874111_2874498_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002302418.1|2874595_2874787_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002305515.1|2875300_2875633_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002303668.1|2875542_2875746_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_002348988.1|2875929_2876085_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_002303667.1|2876360_2877701_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.0	5.1e-66
WP_033612055.1|2877941_2878349_-	NusG domain II-containing protein	NA	NA	NA	NA	NA
2877958:2877973	attR	TCTTTGCTTTCTTTTT	NA	NA	NA	NA
WP_002303665.1|2878537_2879365_-	cobalamin biosynthesis protein	NA	NA	NA	NA	NA
2877958:2877973	attR	TCTTTGCTTTCTTTTT	NA	NA	NA	NA
WP_002330794.1|2879673_2879892_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_106914383.1|2879912_2880548_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	1.2e-17
WP_002303663.1|2880740_2880980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303662.1|2881003_2882527_-	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
WP_002302412.1|2882544_2882667_-	putative metal homeostasis protein	NA	NA	NA	NA	NA
WP_002303661.1|2882696_2883680_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_002297320.1|2883703_2883853_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002297319.1|2883873_2884251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297318.1|2884282_2884462_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002297316.1|2884476_2884746_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_033612042.1|2885268_2887041_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.1	4.6e-30
WP_002302405.1|2888857_2889427_-	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_020945021.1|2890882_2891536_-	Cobalt transport protein	NA	NA	NA	NA	NA
WP_071875988.1|2891666_2892251_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002297295.1|2892827_2893778_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002297294.1|2893774_2894617_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002305510.1|2894749_2895475_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.2	5.6e-19
WP_002302388.1|2895935_2896250_-	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002302387.1|2896265_2897861_-	solute:sodium symporter family transporter	NA	NA	NA	NA	NA
WP_002302386.1|2897883_2898774_-	myo-inosose-2 dehydratase	NA	NA	NA	NA	NA
WP_002302385.1|2898790_2899816_-	inositol 2-dehydrogenase	NA	NA	NA	NA	NA
WP_002302384.1|2899839_2900847_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002330790.1|2900959_2902120_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002305508.1|2902195_2903650_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002297404.1|2904058_2905309_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002305507.1|2905496_2906321_-	5-deoxy-glucuronate isomerase	NA	NA	NA	NA	NA
WP_002305506.1|2906359_2908276_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	24.4	6.2e-25
WP_002305505.1|2908286_2909321_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA	NA
WP_002305504.1|2909477_2910494_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002346694.1|2910595_2910793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305503.1|2911094_2912084_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_002303714.1|2912824_2913805_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_002302368.1|2913817_2914696_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_042959745.1|2914711_2915467_-	TrmB family transcriptional regulator	NA	NA	NA	NA	NA
WP_002303711.1|2916902_2917229_+|transposase	transposase	transposase	Q9JMN8	Wolbachia_phage	34.6	8.1e-10
WP_002303710.1|2917236_2918145_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_071875986.1|2918773_2919025_+	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_002302358.1|2919566_2919725_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002303709.1|2919796_2921023_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
2923011:2923025	attR	CAACAAAATCATTTA	NA	NA	NA	NA
>prophage 1
NC_021987	Enterococcus faecium Aus0085 plasmid p1, complete sequence	130716	14292	76320	130716	transposase	Paenibacillus_phage(25.0%)	49	NA	NA
WP_087043335.1|14292_15455_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.2e-79
WP_002301811.1|17440_18733_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	41.0	6.1e-32
WP_002313174.1|19006_19267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_073120200.1|21045_21342_+|transposase	IS3 family transposase	transposase	A0A0C5AEB1	Paenibacillus_phage	59.2	6.7e-19
WP_002319817.1|22641_23322_+|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_002304893.1|23349_23913_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	34.9	2.2e-18
WP_000824191.1|23957_24125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000366408.1|24158_24458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001224538.1|24498_25116_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
WP_002304891.1|25438_25834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000344083.1|25913_28265_-	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_000718009.1|28389_29079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751236.1|29092_29545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015311.1|29675_30356_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_002285815.1|31769_32423_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	4.0e-24
WP_002348630.1|33132_33849_-	aminotransferase class V-fold PLP-dependent enzyme	NA	Q2XUY6	environmental_halophage	50.0	4.5e-45
WP_002302256.1|33898_34108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302261.1|35761_36793_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.6	1.8e-26
WP_002313180.1|36799_37630_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002302265.1|37626_38433_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002302267.1|38438_39263_-	type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA	NA
WP_002347701.1|39252_40353_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002302270.1|40530_41316_+	histidinol phosphate phosphatase	NA	NA	NA	NA	NA
WP_002330694.1|41348_41732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077828694.1|41807_41939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322470.1|41907_42144_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_002302275.1|42221_43193_-	radical SAM protein	NA	NA	NA	NA	NA
WP_002340465.1|43843_45466_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-122
WP_002301195.1|45751_47128_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002298083.1|47127_47784_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-22
WP_087121905.1|49320_50482_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002330699.1|50512_50962_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_010706480.1|51117_51468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002316137.1|59519_60692_+|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	98.4	1.1e-133
WP_002303163.1|61968_62832_-	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA	NA
WP_002303161.1|63377_64937_-	citrate lyase subunit alpha	NA	NA	NA	NA	NA
WP_002303160.1|64929_65835_-	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA	NA
WP_002303159.1|65839_66133_-	citrate lyase acyl carrier protein	NA	NA	NA	NA	NA
WP_002303157.1|67174_68479_-	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_002303156.1|68459_69647_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002303155.1|69833_70781_+	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_002292681.1|71077_71626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292680.1|71626_72484_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
WP_002300557.1|72769_73057_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002292678.1|73046_73376_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_002305108.1|73452_73725_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_002303154.1|73724_73988_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_002303153.1|74093_74510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_134771592.1|75158_76320_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	5.0e-78
>prophage 1
NC_021988	Enterococcus faecium Aus0085 plasmid p3, complete sequence	31004	1879	13565	31004	transposase	Streptococcus_phage(90.0%)	15	NA	NA
WP_002287225.1|1879_2839_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	3.4e-32
WP_002287227.1|3021_3873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002324171.1|3893_4106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002328852.1|4538_5219_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	7.6e-127
WP_001835296.1|5507_5723_+	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	4.2e-31
WP_000301765.1|5739_6012_+	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
WP_001284311.1|6013_6877_+	toxin zeta	NA	NA	NA	NA	NA
WP_001038796.1|7139_7877_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	2.4e-134
WP_031929417.1|8001_8085_-	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
WP_001096887.1|8626_9421_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_002324522.1|9883_10792_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002347175.1|10794_11043_-	hypothetical protein	NA	A0A1B0RXL7	Streptococcus_phage	96.1	9.5e-27
WP_001255866.1|11039_11948_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000662263.1|11980_12715_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_002303392.1|12695_13565_-	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	90.3	5.7e-151
>prophage 2
NC_021988	Enterococcus faecium Aus0085 plasmid p3, complete sequence	31004	19684	30324	31004	transposase	Bacillus_phage(30.0%)	15	NA	NA
WP_002287525.1|19684_20833_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|20849_21254_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002349227.1|21490_21703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000357244.1|21864_22383_+	YfbU family protein	NA	NA	NA	NA	NA
WP_000774078.1|22389_22902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288897.1|23172_23796_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	30.1	1.8e-13
WP_001015311.1|23891_24572_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_000599739.1|24769_25375_+	cell filamentation protein	NA	NA	NA	NA	NA
WP_002303206.1|25390_25963_+	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	46.0	6.8e-36
WP_073120187.1|26435_27008_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.1	5.0e-55
WP_086956687.1|27108_28271_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002322130.1|28311_28566_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	50.0	4.1e-09
WP_000199136.1|28676_28931_-|transposase	transposase	transposase	A0A1P8CWP5	Bacillus_phage	47.6	2.1e-13
WP_001196543.1|29123_29399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429439.1|29370_30324_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	26.1	7.7e-16
