assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000444405.1_ASM44440v1	NC_021994	Enterococcus faecium Aus0085, complete sequence	1	2522825-2522934	1	CRISPRCasFinder	no		cas3,RT,DEDDh,cas14j,cas2,DinG,csa3	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas14j,cas2,DinG,csa3	NA,NA	NA|720aa|up_9|NC_021994.1_2511412_2513572_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NC_021994.1_2513621_2514587_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NC_021994.1_2514675_2515815_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NC_021994.1_2516123_2516837_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NC_021994.1_2517090_2517792_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NC_021994.1_2518025_2519558_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NC_021994.1_2519748_2520951_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NC_021994.1_2521032_2521722_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NC_021994.1_2521827_2522196_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NC_021994.1_2522248_2522752_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NC_021994.1_2523161_2523851_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NC_021994.1_2523954_2524377_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NC_021994.1_2524719_2525388_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NC_021994.1_2525400_2526273_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NC_021994.1_2526363_2527383_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NC_021994.1_2527555_2528443_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NC_021994.1_2528519_2529065_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NC_021994.1_2529165_2529336_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NC_021994.1_2529359_2529512_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NC_021994.1_2529673_2530318_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_000444405.1_ASM44440v1	NC_021987	Enterococcus faecium Aus0085 plasmid p1, complete sequence	1	107175-107302	1	CRISPRCasFinder	no	cas14j	cas14j	Unclear	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	TypeV	cas3,RT,DEDDh,cas14j,cas2,DinG,csa3	NA|65aa|up_0|NC_021987.1_105199_105394_-,NA|111aa|down_0|NC_021987.1_108607_108940_+,NA|791aa|down_3|NC_021987.1_111794_114167_+,NA|72aa|down_9|NC_021987.1_120261_120477_-	NA|117aa|up_9|NC_021987.1_95661_96012_-	PRK10514, PRK10514, putative acetyltransferase; Provisional	NA|66aa|up_8|NC_021987.1_97236_97434_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|95aa|up_7|NC_021987.1_98555_98840_-	pfam09639, YjcQ, YjcQ protein	NA|457aa|up_6|NC_021987.1_98860_100231_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|303aa|up_5|NC_021987.1_100449_101359_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|106aa|up_4|NC_021987.1_101992_102310_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|85aa|up_3|NC_021987.1_102310_102565_-	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|135aa|up_2|NC_021987.1_102923_103328_+	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|383aa|up_1|NC_021987.1_103344_104493_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|65aa|up_0|NC_021987.1_105199_105394_-	NA	NA|111aa|down_0|NC_021987.1_108607_108940_+	NA	NA|114aa|down_1|NC_021987.1_109557_109899_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|417aa|down_2|NC_021987.1_110135_111386_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|791aa|down_3|NC_021987.1_111794_114167_+	NA	NA|487aa|down_4|NC_021987.1_114227_115688_+	pfam13155, Toprim_2, Toprim-like	NA|327aa|down_5|NC_021987.1_116919_117900_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|198aa|down_6|NC_021987.1_118140_118734_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|300aa|down_7|NC_021987.1_118746_119646_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|162aa|down_8|NC_021987.1_119648_120134_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|72aa|down_9|NC_021987.1_120261_120477_-	NA
GCF_000444405.1_ASM44440v1	NC_021989	Enterococcus faecium Aus0085 plasmid p4, complete sequence	1	9164-9267	1	CRISPRCasFinder	no			Orphan	TGGGGGATAAATTGTCACACTATGGGGGATAAATTGT	37	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas14j,cas2,DinG,csa3	NA,NA	NA|246aa|up_9|NC_021989.1_0_738_+	pfam01051, Rep_3, Initiator Replication protein	NA|180aa|up_8|NC_021989.1_765_1305_+	pfam04394, DUF536, Protein of unknown function, DUF536	NA|154aa|up_7|NC_021989.1_1803_2265_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|125aa|up_6|NC_021989.1_2397_2772_+	pfam09683, Lactococcin_972, Bacteriocin (Lactococcin_972)	NA|709aa|up_5|NC_021989.1_2825_4952_+	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein	NA|207aa|up_4|NC_021989.1_4948_5569_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|127aa|up_3|NC_021989.1_6261_6642_+	pfam05713, MobC, Bacterial mobilisation protein (MobC)	NA|305aa|up_2|NC_021989.1_6623_7538_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|230aa|up_1|NC_021989.1_7777_8467_+	PRK12887, ubiA, tocopherol phytyltransferase; Reviewed	NA|29aa|up_0|NC_021989.1_8587_8674_-	pfam13955, Fst_toxin, Toxin Fst, type I toxin-antitoxin system	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
