assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	1	701028-701122	1	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	CCCCTAATTAATAAATTAAAAGGGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|39aa|up_2|NC_022222.1_699048_699165_+,NA|230aa|down_2|NC_022222.1_702943_703633_-,NA|126aa|down_4|NC_022222.1_704269_704647_+,NA|100aa|down_5|NC_022222.1_704784_705084_+	NA|336aa|up_9|NC_022222.1_690829_691837_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NC_022222.1_692422_693220_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NC_022222.1_693580_694225_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NC_022222.1_694922_697073_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NC_022222.1_697218_697578_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NC_022222.1_697767_698484_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NC_022222.1_698483_698957_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NC_022222.1_699048_699165_+	NA	NA|215aa|up_1|NC_022222.1_699309_699954_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NC_022222.1_700069_700936_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NC_022222.1_701139_702360_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NC_022222.1_702356_702845_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NC_022222.1_702943_703633_-	NA	NA|148aa|down_3|NC_022222.1_703759_704203_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|126aa|down_4|NC_022222.1_704269_704647_+	NA	NA|100aa|down_5|NC_022222.1_704784_705084_+	NA	NA|181aa|down_6|NC_022222.1_705163_705706_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NC_022222.1_705801_706368_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NC_022222.1_706369_706828_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NC_022222.1_706830_707514_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	2	1116523-1116653	1	PILER-CR	no		cas3,DEDDh,csa3,WYL	Orphan	CAATGAAAGTTGGGGGGGGCCCCAACACAGAGAAA	35	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,csa3,WYL	NA|56aa|up_5|NC_022222.1_1112312_1112480_+,NA|169aa|up_2|NC_022222.1_1114431_1114938_+,NA|62aa|down_0|NC_022222.1_1116857_1117043_-,NA|78aa|down_1|NC_022222.1_1117664_1117898_-,NA|49aa|down_3|NC_022222.1_1120006_1120153_+,NA|75aa|down_4|NC_022222.1_1120109_1120334_+	NA|272aa|up_9|NC_022222.1_1109232_1110048_+	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|267aa|up_8|NC_022222.1_1110288_1111089_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_7|NC_022222.1_1111100_1111688_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_6|NC_022222.1_1111680_1112184_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_5|NC_022222.1_1112312_1112480_+	NA	NA|106aa|up_4|NC_022222.1_1112672_1112990_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_3|NC_022222.1_1113359_1113761_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NC_022222.1_1114431_1114938_+	NA	NA|166aa|up_1|NC_022222.1_1115196_1115694_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NC_022222.1_1115847_1116198_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NC_022222.1_1116857_1117043_-	NA	NA|78aa|down_1|NC_022222.1_1117664_1117898_-	NA	NA|320aa|down_2|NC_022222.1_1118374_1119334_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_3|NC_022222.1_1120006_1120153_+	NA	NA|75aa|down_4|NC_022222.1_1120109_1120334_+	NA	NA|239aa|down_5|NC_022222.1_1120779_1121496_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_6|NC_022222.1_1121603_1122329_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_7|NC_022222.1_1122423_1123149_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_8|NC_022222.1_1123586_1124588_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_9|NC_022222.1_1124610_1125543_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	3	1194339-1194431	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,csa3,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,csa3,WYL	NA,NA	NA|215aa|up_9|NC_022222.1_1184148_1184793_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NC_022222.1_1184799_1185441_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NC_022222.1_1185822_1186011_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NC_022222.1_1186453_1186828_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NC_022222.1_1186842_1188489_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NC_022222.1_1188678_1190739_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NC_022222.1_1190941_1191514_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NC_022222.1_1191518_1192505_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NC_022222.1_1192497_1193424_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NC_022222.1_1193416_1194151_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NC_022222.1_1194520_1194754_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NC_022222.1_1194869_1195601_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NC_022222.1_1195747_1199314_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NC_022222.1_1199313_1200564_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NC_022222.1_1200550_1200883_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NC_022222.1_1200908_1202276_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NC_022222.1_1202710_1202986_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NC_022222.1_1203173_1203677_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NC_022222.1_1203676_1204414_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NC_022222.1_1204516_1204867_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	4	1402254-1402333	3	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|68aa|up_5|NC_022222.1_1393734_1393938_-,NA	NA|379aa|up_9|NC_022222.1_1388085_1389222_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_8|NC_022222.1_1389294_1390638_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_7|NC_022222.1_1390862_1392749_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_6|NC_022222.1_1392762_1393554_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_5|NC_022222.1_1393734_1393938_-	NA	NA|270aa|up_4|NC_022222.1_1393966_1394776_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|423aa|up_3|NC_022222.1_1395355_1396624_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_2|NC_022222.1_1396637_1399436_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|452aa|up_1|NC_022222.1_1399724_1401080_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|up_0|NC_022222.1_1401076_1401736_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_0|NC_022222.1_1402877_1403492_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_1|NC_022222.1_1403508_1404579_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_2|NC_022222.1_1404590_1405100_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_3|NC_022222.1_1405499_1406990_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_4|NC_022222.1_1407181_1407403_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_5|NC_022222.1_1407402_1407903_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_6|NC_022222.1_1407914_1408343_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_7|NC_022222.1_1408335_1408869_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_8|NC_022222.1_1408958_1409798_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|160aa|down_9|NC_022222.1_1409812_1410292_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	5	1602128-1602211	4	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	TGTTGGGGCCCCGTCCCCAACTTGCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA,NA|49aa|down_3|NC_022222.1_1606272_1606419_-,NA|43aa|down_8|NC_022222.1_1609455_1609584_-	NA|208aa|up_9|NC_022222.1_1590863_1591487_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NC_022222.1_1591486_1592755_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NC_022222.1_1592766_1593690_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NC_022222.1_1593692_1594331_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NC_022222.1_1594615_1594924_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NC_022222.1_1594938_1595367_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NC_022222.1_1595370_1595631_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NC_022222.1_1595693_1598324_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NC_022222.1_1598665_1601143_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NC_022222.1_1601144_1601813_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NC_022222.1_1602449_1603568_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NC_022222.1_1603568_1604711_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NC_022222.1_1605022_1606036_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NC_022222.1_1606272_1606419_-	NA	NA|61aa|down_4|NC_022222.1_1606458_1606641_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NC_022222.1_1606740_1607163_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NC_022222.1_1607247_1608522_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NC_022222.1_1608682_1609456_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NC_022222.1_1609455_1609584_-	NA	NA|589aa|down_9|NC_022222.1_1609916_1611683_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	6	1987071-1987159	5	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|115aa|up_9|NC_022222.1_1980791_1981136_-,NA|127aa|up_7|NC_022222.1_1982484_1982865_-,NA|70aa|up_3|NC_022222.1_1986167_1986377_-,NA|49aa|up_2|NC_022222.1_1986369_1986516_-,NA	NA|115aa|up_9|NC_022222.1_1980791_1981136_-	NA	NA|214aa|up_8|NC_022222.1_1981846_1982488_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|NC_022222.1_1982484_1982865_-	NA	NA|567aa|up_6|NC_022222.1_1983194_1984895_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|NC_022222.1_1984908_1985778_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|107aa|up_4|NC_022222.1_1985844_1986165_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|70aa|up_3|NC_022222.1_1986167_1986377_-	NA	NA|49aa|up_2|NC_022222.1_1986369_1986516_-	NA	NA|106aa|up_1|NC_022222.1_1986512_1986830_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NC_022222.1_1986834_1987053_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NC_022222.1_1987225_1987900_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NC_022222.1_1987913_1989086_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NC_022222.1_1989154_1990771_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NC_022222.1_1990846_1991131_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NC_022222.1_1991305_1992049_+	pfam02517, Abi, CAAX protease self-immunity	NA|403aa|down_5|NC_022222.1_1992073_1993282_-	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|209aa|down_6|NC_022222.1_1993478_1994105_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NC_022222.1_1994465_1995251_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NC_022222.1_1995849_1995984_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NC_022222.1_1996219_1996783_+	smart00793, AgrB, Accessory gene regulator B
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	7	2116428-2116514	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTTATGCA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|77aa|up_5|NC_022222.1_2111302_2111533_-,NA|364aa|up_0|NC_022222.1_2115319_2116411_+,NA|35aa|down_0|NC_022222.1_2116917_2117022_-,NA|26aa|down_3|NC_022222.1_2121346_2121424_+	NA|237aa|up_9|NC_022222.1_2106910_2107621_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NC_022222.1_2107741_2108185_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NC_022222.1_2108384_2108798_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NC_022222.1_2109255_2110629_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NC_022222.1_2111302_2111533_-	NA	NA|313aa|up_4|NC_022222.1_2111563_2112502_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NC_022222.1_2112937_2113603_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NC_022222.1_2113754_2114075_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NC_022222.1_2114076_2115054_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NC_022222.1_2115319_2116411_+	NA	NA|35aa|down_0|NC_022222.1_2116917_2117022_-	NA	NA|431aa|down_1|NC_022222.1_2117733_2119026_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|254aa|down_2|NC_022222.1_2119018_2119780_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|26aa|down_3|NC_022222.1_2121346_2121424_+	NA	NA|286aa|down_4|NC_022222.1_2122106_2122964_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NC_022222.1_2123031_2123814_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NC_022222.1_2124045_2125851_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|517aa|down_7|NC_022222.1_2126531_2128082_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NC_022222.1_2128116_2130249_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NC_022222.1_2130260_2130695_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	8	2393848-2393940	7	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	TTCTTCAAATTTATTTGTTAGAAAG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|35aa|up_2|NC_022222.1_2391499_2391604_+,NA|32aa|down_0|NC_022222.1_2394144_2394240_-	NA|200aa|up_9|NC_022222.1_2384976_2385576_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NC_022222.1_2385594_2385957_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NC_022222.1_2386211_2387462_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NC_022222.1_2387558_2388290_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NC_022222.1_2388286_2389006_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NC_022222.1_2388986_2389766_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NC_022222.1_2389886_2391326_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NC_022222.1_2391499_2391604_+	NA	NA|229aa|up_1|NC_022222.1_2391757_2392444_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NC_022222.1_2392771_2393638_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|32aa|down_0|NC_022222.1_2394144_2394240_-	NA	NA|437aa|down_1|NC_022222.1_2394334_2395645_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NC_022222.1_2396136_2397066_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NC_022222.1_2397632_2398580_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NC_022222.1_2398581_2399559_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NC_022222.1_2399610_2400078_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NC_022222.1_2400088_2400781_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NC_022222.1_2400791_2401907_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NC_022222.1_2401884_2402892_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NC_022222.1_2402893_2404252_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	9	2667921-2668142	1	CRT	no		cas3,DEDDh,csa3,WYL	Orphan	TGAGTCAGATACNCTNGTTGAACC	24	1	1	2667999-2668016	NC_022222.1_996970-996953	NA	4	4	Orphan	cas3,DEDDh,csa3,WYL	NA|636aa|up_7|NC_022222.1_2654627_2656535_-,NA|318aa|down_1|NC_022222.1_2675760_2676714_+,NA|315aa|down_2|NC_022222.1_2676785_2677730_+,NA|217aa|down_3|NC_022222.1_2677716_2678367_+,NA|95aa|down_4|NC_022222.1_2679524_2679809_+,NA|120aa|down_5|NC_022222.1_2679958_2680318_+	NA|620aa|up_9|NC_022222.1_2651772_2653632_+	PRK08581, PRK08581, amidase domain-containing protein	NA|187aa|up_8|NC_022222.1_2653898_2654459_-	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|636aa|up_7|NC_022222.1_2654627_2656535_-	NA	NA|453aa|up_6|NC_022222.1_2656775_2658134_-	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|503aa|up_5|NC_022222.1_2658126_2659635_-	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|797aa|up_4|NC_022222.1_2659652_2662043_-	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2	NA|320aa|up_3|NC_022222.1_2662032_2662992_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|523aa|up_2|NC_022222.1_2662969_2664538_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|518aa|up_1|NC_022222.1_2664527_2666081_-	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1	NA|404aa|up_0|NC_022222.1_2666091_2667303_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|231aa|down_0|NC_022222.1_2674754_2675447_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|318aa|down_1|NC_022222.1_2675760_2676714_+	NA	NA|315aa|down_2|NC_022222.1_2676785_2677730_+	NA	NA|217aa|down_3|NC_022222.1_2677716_2678367_+	NA	NA|95aa|down_4|NC_022222.1_2679524_2679809_+	NA	NA|120aa|down_5|NC_022222.1_2679958_2680318_+	NA	NA|204aa|down_6|NC_022222.1_2680402_2681014_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|167aa|down_7|NC_022222.1_2681555_2682056_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|down_8|NC_022222.1_2682290_2683058_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|down_9|NC_022222.1_2683054_2683747_-	cd05387, BY-kinase, bacterial tyrosine-kinase
GCF_000462955.1_ASM46295v1	NC_022222	Staphylococcus aureus subsp. aureus 6850, complete sequence	10	2729866-2729951	8	CRISPRCasFinder	no		cas3,DEDDh,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	2729896-2729921|2729896-2729921|2729896-2729921|2729896-2729921|2729896-2729921|2729896-2729921	NC_022222.1_1257068-1257093|NC_022222.1_2273210-2273185|NC_022222.1_1960641-1960666|NC_022222.1_2380303-2380278|NC_022222.1_796715-796740|NC_022222.1_1602232-1602257	NA	1	1	Orphan	cas3,DEDDh,csa3,WYL	NA|64aa|up_6|NC_022222.1_2725304_2725496_+,NA|166aa|up_5|NC_022222.1_2726102_2726600_-,NA|64aa|up_4|NC_022222.1_2727056_2727248_+,NA	NA|171aa|up_9|NC_022222.1_2721782_2722295_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_8|NC_022222.1_2722584_2723343_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_7|NC_022222.1_2723332_2725213_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NC_022222.1_2725304_2725496_+	NA	NA|166aa|up_5|NC_022222.1_2726102_2726600_-	NA	NA|64aa|up_4|NC_022222.1_2727056_2727248_+	NA	NA|67aa|up_3|NC_022222.1_2727639_2727840_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NC_022222.1_2727966_2728536_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|145aa|up_1|NC_022222.1_2728786_2729221_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NC_022222.1_2729288_2729642_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NC_022222.1_2730251_2731091_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NC_022222.1_2731133_2731853_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NC_022222.1_2731852_2733730_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NC_022222.1_2733796_2735176_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NC_022222.1_2735319_2735673_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NC_022222.1_2735792_2735930_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
