bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	156491	156467	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	156467-156491	CAACACAGAGAATTTCGAAAAGAAA	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	360111	360087	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	360087-360111	CAACATAGAGAATTTCGAAAAGAAA	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	360166	360142	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	360142-360166	CAACATAGAGAATTTCGAAAAGAAA	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	627110	627086	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	627086-627110	CAACACAGAGAATTTCGAAAAGAAA	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	797514	797538	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	797514-797538	TTTCTTTTCGAAATTCTCTGTGTTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	797572	797596	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	797572-797596	TTTCTTTTCGAAATTCTCTGTGTTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	797630	797654	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	797630-797654	TTTCTTTTCGAAATTCTCTGTGTTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	797688	797712	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	797688-797712	TTTCTTTTCGAAATTCTCTGTGTTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	1009912	1009936	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	1009912-1009936	TTTCTTTTCGAAATTCTCTGTGTTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	1320082	1320058	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	1320058-1320082	CAACACAGAGAATTTCGAAAAGAAA	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	1408647	1408671	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	1408647-1408671	TTTCTTTTCGAAATTCTCTGTGTTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	1585528	1585552	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	1585528-1585552	TTTCTTTTCGAAATTCTCTGTGTTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	1761591	1761567	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	1761567-1761591	CAACACAGAGAATTTCGAAAAGAAA	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	1911413	1911437	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	1911413-1911437	TTTCTTTTCGAAATTCTCTGTGTTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	2258745	2258769	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	2258745-2258769	TTTCTTTTCGAAATTCTCTGTGTTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.00	25	1	0	1	25	2597889	2597865	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-05	38.0	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	2597865-2597889	CAACACAGAGAATTTCGAAAAGAAA	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	92.00	25	2	0	1	25	804828	804852	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-04	34.9	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	804828-804852	TTTCATTTCGAAATTCTCTGTGTTG	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	92.00	25	2	0	1	25	1324548	1324572	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-04	34.9	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	1324548-1324572	TTTCTTATCGAAATTCTCTGTGTTG	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	1.1|260141|25|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	92.00	25	2	0	1	25	2269665	2269689	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	4e-04	34.9	1.0	TTTCTTTTCGAAATTCTCTTTGTTG	2269665-2269689	TTTCTTTTTGAAATTCTCTATGTTG	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.88	32	1	0	1	32	360130	360099	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	3e-08	49.1	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	360099-360130	TTTCGAAAAGAAATTCTACAAGCAATGCAAGT	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.88	32	1	0	1	32	360185	360154	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	3e-08	49.1	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	360154-360185	TTTCGAAAAGAAATTCTACAAGCAATGCAAGT	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.88	32	1	0	1	32	1761610	1761579	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	3e-08	49.1	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	1761579-1761610	TTTCGAAAAGAAATTCTACAGACAATGCAAGT	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.75	32	2	0	1	32	156510	156479	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	2e-07	46.0	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	156479-156510	TTTCGAAAAGAAATTCTACAGGCAATGCAAGT	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.75	32	2	0	1	32	627129	627098	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	2e-07	46.0	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	627098-627129	TTTCGAAAAGAAATTCTACAGGCAATGCAAGT	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.75	32	2	0	1	32	797553	797584	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	2e-07	46.0	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	797553-797584	ACTTGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.75	32	2	0	1	32	797611	797642	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	2e-07	46.0	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	797611-797642	ACTTGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.75	32	2	0	1	32	797669	797700	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	2e-07	46.0	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	797669-797700	ACTTGCATTGCCTGTAGAATTTCTTTTCGAAA	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.75	32	2	0	1	32	1920743	1920774	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	2e-07	46.0	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	1920743-1920774	ACTTGCATTGTCTGTAGAATTTCCTTTCGAAA	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.75	32	2	0	1	32	2269646	2269677	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	2e-07	46.0	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	2269646-2269677	ACTTGCATTGTCTGTAGAATTTCTTTTTGAAA	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	3.1|792002|32|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.75	32	2	0	1	32	2597908	2597877	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	2e-07	46.0	1.0	ACTTGCATTGTTTGTAGAATTTCTTTTCGAAA	2597877-2597908	TTTCGAAAAGAAATTCTACAGGCAATGCAAGT	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.77	31	1	0	1	31	360012	359982	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	8e-08	47.5	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	359982-360012	AGCTGACGAAAAGTCAGCTTACAATAATGTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.77	31	1	0	1	31	627183	627153	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	8e-08	47.5	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	627153-627183	AGCTGACGAAAAGTCAGCTTACAATAATGTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.77	31	1	0	1	31	1009839	1009869	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	8e-08	47.5	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	1009839-1009869	CACATTATTGTAAGCTGACTTTTCGTCAGCT	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.77	31	1	0	1	31	1110329	1110299	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	8e-08	47.5	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	1110299-1110329	AGCTGACGAAAAGTCAGCTTACAATAATGTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.77	31	1	0	1	31	1320155	1320125	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	8e-08	47.5	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	1320125-1320155	AGCTGACGAAAAGTCAGCTTACAATAATGTG	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.77	31	1	0	1	31	1585455	1585485	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	8e-08	47.5	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	1585455-1585485	CACATTATTGTAAGCTGACTTTTCGTCAGCT	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.77	31	1	0	1	31	2258789	2258819	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	8e-08	47.5	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	2258789-2258819	CACATTATTGTAAGCTGACTTTTCGTCAGCT	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	96.77	31	1	0	1	31	2547446	2547476	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	8e-08	47.5	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	2547446-2547476	CACATTATTGTAAGCTGACTTTTCGTCAGCT	1
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.55	31	2	0	1	31	797441	797471	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	7e-07	44.4	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	797441-797471	CACATTATTGTAAGCTGACTTTTCGTAAGCT	2
NC_022226	Staphylococcus aureus subsp. aureus CN1, complete sequence	6.1|1910000|31|NC_022226|CRISPRCasFinder	NC_022226.1	Staphylococcus aureus subsp. aureus CN1, complete sequence	93.55	31	2	0	1	31	2269706	2269736	260108-260198|400026-400127|791979-792056|1087469-1087561|1868470-1868551|1909975-1910055|2153694-2153774|2419689-2419786	7e-07	44.4	1.0	CACATTATCGTAAGCTGACTTTTCGTCAGCT	2269706-2269736	CACATTATTGTATGCTGACTTTTCGTCAGCT	2
