assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000464435.1_ASM46443v1	NC_022270	Vibrio campbellii ATCC BAA-1116 chromosome II, complete sequence	1	474031-474113	1	CRISPRCasFinder	no	RT	RT,csa3,cas6f,cas7f,cas5f,cas3	Unclear	AAGGTAACGACACGTTAACGGTCAGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,WYL,DinG,csx1,cas3,PrimPol,csa3,cas6f,cas7f,cas5f	NA|66aa|up_5|NC_022270.1_461414_461612_+,NA|154aa|up_0|NC_022270.1_470802_471264_+,NA|237aa|down_0|NC_022270.1_474855_475566_+,NA|104aa|down_2|NC_022270.1_479087_479399_+	NA|265aa|up_9|NC_022270.1_456430_457225_+	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|449aa|up_8|NC_022270.1_457349_458696_-	pfam07394, DUF1501, Protein of unknown function (DUF1501)	NA|495aa|up_7|NC_022270.1_458701_460186_-	pfam08811, DUF1800, Protein of unknown function (DUF1800)	NA|240aa|up_6|NC_022270.1_460624_461344_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|66aa|up_5|NC_022270.1_461414_461612_+	NA	NA|398aa|up_4|NC_022270.1_462467_463661_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	RT|189aa|up_3|NC_022270.1_463773_464340_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|684aa|up_2|NC_022270.1_465325_467377_+	TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family	NA|458aa|up_1|NC_022270.1_467361_468735_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|154aa|up_0|NC_022270.1_470802_471264_+	NA	NA|237aa|down_0|NC_022270.1_474855_475566_+	NA	NA|1056aa|down_1|NC_022270.1_475579_478747_+	COG2931, COG2931, RTX toxins and related Ca2+-binding proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|104aa|down_2|NC_022270.1_479087_479399_+	NA	NA|118aa|down_3|NC_022270.1_479395_479749_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|511aa|down_4|NC_022270.1_479808_481341_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|402aa|down_5|NC_022270.1_482416_483622_-	pfam11301, DUF3103, Protein of unknown function (DUF3103)	NA|215aa|down_6|NC_022270.1_483878_484523_-	cd07527, HAD_ScGPP-like, subfamily of beta-phosphoglucomutase-like family, similar to Saccharomyces cerevisiae DL-glycerol-3-phosphate phosphatase (GPP1p/ Rhr2p and GPP2p/HOR2p) and 2-deoxyglucose-6-phosphate phosphatase (DOG1p and DOG2p)	NA|136aa|down_7|NC_022270.1_484587_484995_-	pfam09413, DUF2007, Putative prokaryotic signal transducing protein	NA|176aa|down_8|NC_022270.1_485234_485762_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|287aa|down_9|NC_022270.1_486309_487170_+	PRK11752, PRK11752, putative S-transferase; Provisional
GCF_000464435.1_ASM46443v1	NC_022270	Vibrio campbellii ATCC BAA-1116 chromosome II, complete sequence	2	677185-677393	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f	RT,csa3,cas6f,cas7f,cas5f,cas3	Unclear	ATTATCAGCTACCTACTCGGCAGTTTAC,ATTATCAGCTACCTACTCGGCAGTTTACT,ATTATCAGCTACCTACTCGGCAGTTTACT	28,29,29	0	0	NA	NA	NA:NA:NA	3,3,2	3	Unclear	RT,DEDDh,WYL,DinG,csx1,cas3,PrimPol,csa3,cas6f,cas7f,cas5f	NA|301aa|up_6|NC_022270.1_670484_671387_+,NA|183aa|up_1|NC_022270.1_676179_676728_-,NA	NA|513aa|up_9|NC_022270.1_666687_668226_+	PRK10565, PRK10565, putative carbohydrate kinase; Provisional	NA|348aa|up_8|NC_022270.1_668673_669717_+	PRK05096, PRK05096, guanosine 5'-monophosphate oxidoreductase; Provisional	NA|207aa|up_7|NC_022270.1_669861_670482_+	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal	NA|301aa|up_6|NC_022270.1_670484_671387_+	NA	NA|398aa|up_5|NC_022270.1_671404_672598_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|334aa|up_4|NC_022270.1_672697_673699_+	pfam00665, rve, Integrase core domain	NA|327aa|up_3|NC_022270.1_673720_674701_+	pfam05621, TniB, Bacterial TniB protein	NA|465aa|up_2|NC_022270.1_674791_676186_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|183aa|up_1|NC_022270.1_676179_676728_-	NA	NA|69aa|up_0|NC_022270.1_676819_677026_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas6f|200aa|down_0|NC_022270.1_677520_678120_-	cd09674, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|353aa|down_1|NC_022270.1_678122_679181_-	TIGR02566, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy3	cas5f|641aa|down_2|NC_022270.1_679152_681075_-	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	NA|395aa|down_3|NC_022270.1_681075_682260_-	pfam06527, TniQ, TniQ	NA|1586aa|down_4|NC_022270.1_682465_687223_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|361aa|down_5|NC_022270.1_687222_688305_-	COG0823, TolB, Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]	NA|398aa|down_6|NC_022270.1_688950_690144_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|670aa|down_7|NC_022270.1_692095_694105_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|164aa|down_8|NC_022270.1_694110_694602_+	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD	NA|398aa|down_9|NC_022270.1_694697_695891_+	pfam01609, DDE_Tnp_1, Transposase DDE domain
GCF_000464435.1_ASM46443v1	NC_022269	Vibrio campbellii ATCC BAA-1116 chromosome I, complete sequence	1	1322510-1322662	1	CRISPRCasFinder	no	DinG	RT,DEDDh,WYL,DinG,csx1,cas3,PrimPol,csa3	Type IV-A	TTTTGGTTCGCTGACTTGTTCAAATACCGAAACTAGATTTAGTTCGGAGCA	51	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,WYL,DinG,csx1,cas3,PrimPol,csa3,cas6f,cas7f,cas5f	NA|314aa|up_9|NC_022269.1_1307040_1307982_-,NA|366aa|up_4|NC_022269.1_1316038_1317136_-,NA|139aa|up_1|NC_022269.1_1318902_1319319_-,NA	NA|314aa|up_9|NC_022269.1_1307040_1307982_-	NA	NA|1316aa|up_8|NC_022269.1_1307974_1311922_-	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|297aa|up_7|NC_022269.1_1311955_1312846_-	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems	NA|540aa|up_6|NC_022269.1_1312910_1314530_-	COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|407aa|up_5|NC_022269.1_1314526_1315747_-	PRK06923, PRK06923, isochorismate synthase DhbC; Validated	NA|366aa|up_4|NC_022269.1_1316038_1317136_-	NA	NA|264aa|up_3|NC_022269.1_1317237_1318029_+	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|241aa|up_2|NC_022269.1_1318048_1318771_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|139aa|up_1|NC_022269.1_1318902_1319319_-	NA	NA|287aa|up_0|NC_022269.1_1321545_1322406_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|400aa|down_0|NC_022269.1_1322830_1324030_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|315aa|down_1|NC_022269.1_1324266_1325211_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|324aa|down_2|NC_022269.1_1325282_1326254_-	pfam13406, SLT_2, Transglycosylase SLT domain	NA|94aa|down_3|NC_022269.1_1326302_1326584_-	COG3100, COG3100, Uncharacterized protein conserved in bacteria [Function unknown]	NA|221aa|down_4|NC_022269.1_1326781_1327444_+	PRK04804, minC, septum site-determining protein MinC	NA|271aa|down_5|NC_022269.1_1327461_1328274_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|88aa|down_6|NC_022269.1_1328276_1328540_+	PRK00296, minE, cell division topological specificity factor MinE; Reviewed	NA|373aa|down_7|NC_022269.1_1330308_1331427_-	PRK10829, PRK10829, ribonuclease D; Provisional	NA|564aa|down_8|NC_022269.1_1331514_1333206_-	PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase FadD	NA|285aa|down_9|NC_022269.1_1333312_1334167_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_000464435.1_ASM46443v1	NC_022269	Vibrio campbellii ATCC BAA-1116 chromosome I, complete sequence	2	2477448-2477580	2	CRISPRCasFinder	no		RT,DEDDh,WYL,DinG,csx1,cas3,PrimPol,csa3	Orphan	GGGGTTTTGATGGACTCAAAGCAAGAACAGAATTGAATGTGTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,WYL,DinG,csx1,cas3,PrimPol,csa3,cas6f,cas7f,cas5f	NA|62aa|up_2|NC_022269.1_2469853_2470039_+,NA	NA|265aa|up_9|NC_022269.1_2460913_2461708_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|448aa|up_8|NC_022269.1_2461763_2463107_+	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|477aa|up_7|NC_022269.1_2463175_2464606_-	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase	NA|214aa|up_6|NC_022269.1_2464867_2465509_+	PRK11202, PRK11202, HTH-type transcriptional repressor FabR	NA|122aa|up_5|NC_022269.1_2465508_2465874_+	PRK11056, PRK11056, YijD family membrane protein	NA|370aa|up_4|NC_022269.1_2465938_2467048_-	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated	NA|618aa|up_3|NC_022269.1_2467491_2469345_+	PRK10641, btuB, TonB-dependent vitamin B12 receptor BtuB	NA|62aa|up_2|NC_022269.1_2469853_2470039_+	NA	NA|269aa|up_1|NC_022269.1_2470548_2471355_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|152aa|up_0|NC_022269.1_2471317_2471773_-	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|398aa|down_0|NC_022269.1_2478575_2479769_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|447aa|down_1|NC_022269.1_2479946_2481287_-	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase	NA|348aa|down_2|NC_022269.1_2481892_2482936_+	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase	NA|322aa|down_3|NC_022269.1_2482932_2483898_+	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|308aa|down_4|NC_022269.1_2483914_2484838_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|127aa|down_5|NC_022269.1_2487012_2487393_+	PRK05740, secE, preprotein translocase subunit SecE; Reviewed	NA|183aa|down_6|NC_022269.1_2487406_2487955_+	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|143aa|down_7|NC_022269.1_2488096_2488525_+	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|234aa|down_8|NC_022269.1_2488529_2489231_+	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|165aa|down_9|NC_022269.1_2489524_2490019_+	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed
GCF_000464435.1_ASM46443v1	NC_022271	Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence	1	28092-28166	1	CRISPRCasFinder	no	csa3	csa3,RT	Type I-A	TGTGGTACTTCTTGTGGTGACTCT	24	1	2	28116-28142|28116-28142	NC_022269.1_131672-131698|NC_022269.1_1223434-1223408	NA	1	1	Orphan	RT,DEDDh,WYL,DinG,csx1,cas3,PrimPol,csa3,cas6f,cas7f,cas5f	NA|144aa|up_9|NC_022271.1_18832_19264_+,NA|400aa|up_3|NC_022271.1_23466_24666_-,NA|66aa|up_0|NC_022271.1_27279_27477_-,NA|179aa|down_1|NC_022271.1_31336_31873_-,NA|51aa|down_7|NC_022271.1_37734_37887_-	NA|144aa|up_9|NC_022271.1_18832_19264_+	NA	NA|220aa|up_8|NC_022271.1_19317_19977_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|95aa|up_7|NC_022271.1_20136_20421_+	PRK06771, PRK06771, hypothetical protein; Provisional	NA|348aa|up_6|NC_022271.1_20879_21923_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|44aa|up_5|NC_022271.1_22003_22135_+	pfam11665, DUF3265, Protein of unknown function (DUF3265)	NA|339aa|up_4|NC_022271.1_22339_23356_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|400aa|up_3|NC_022271.1_23466_24666_-	NA	NA|275aa|up_2|NC_022271.1_25446_26271_+	pfam11185, DUF2971, Protein of unknown function (DUF2971)	csa3|99aa|up_1|NC_022271.1_26996_27293_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|66aa|up_0|NC_022271.1_27279_27477_-	NA	NA|735aa|down_0|NC_022271.1_29123_31328_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|179aa|down_1|NC_022271.1_31336_31873_-	NA	NA|580aa|down_2|NC_022271.1_31883_33623_-	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion]	NA|339aa|down_3|NC_022271.1_33665_34682_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|398aa|down_4|NC_022271.1_35032_36226_-	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS)	NA|256aa|down_5|NC_022271.1_36218_36986_-	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9	NA|252aa|down_6|NC_022271.1_36982_37738_-	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]	NA|51aa|down_7|NC_022271.1_37734_37887_-	NA	NA|317aa|down_8|NC_022271.1_37961_38912_-	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|78aa|down_9|NC_022271.1_38921_39155_-	cd16341, FdhE, formate dehydrogenase accessory protein FdhE and similar proteins
GCF_000464435.1_ASM46443v1	NC_022271	Vibrio campbellii ATCC BAA-1116 plasmid unnamed, complete sequence	2	52213-52312	2	CRISPRCasFinder	no	RT	csa3,RT	Unclear	TTTTCAATTGTGCAATTTAGTTA	23	0	0	NA	NA	NA	1	1	Orphan	RT,DEDDh,WYL,DinG,csx1,cas3,PrimPol,csa3,cas6f,cas7f,cas5f	NA|142aa|up_8|NC_022271.1_45392_45818_-,NA|160aa|up_6|NC_022271.1_46474_46954_-,NA|267aa|up_5|NC_022271.1_47657_48458_+,NA|99aa|up_2|NC_022271.1_50456_50753_+,NA|113aa|up_1|NC_022271.1_51105_51444_-,NA|82aa|up_0|NC_022271.1_51454_51700_-,NA|151aa|down_0|NC_022271.1_52572_53025_-,NA|104aa|down_5|NC_022271.1_56856_57168_-,NA|255aa|down_7|NC_022271.1_58621_59386_+,NA|74aa|down_8|NC_022271.1_59905_60127_-,NA|401aa|down_9|NC_022271.1_60134_61337_-	NA|197aa|up_9|NC_022271.1_44780_45371_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|142aa|up_8|NC_022271.1_45392_45818_-	NA	NA|216aa|up_7|NC_022271.1_45830_46478_-	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB	NA|160aa|up_6|NC_022271.1_46474_46954_-	NA	NA|267aa|up_5|NC_022271.1_47657_48458_+	NA	NA|133aa|up_4|NC_022271.1_49157_49556_+	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1	NA|256aa|up_3|NC_022271.1_49668_50436_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|99aa|up_2|NC_022271.1_50456_50753_+	NA	NA|113aa|up_1|NC_022271.1_51105_51444_-	NA	NA|82aa|up_0|NC_022271.1_51454_51700_-	NA	NA|151aa|down_0|NC_022271.1_52572_53025_-	NA	NA|329aa|down_1|NC_022271.1_53221_54208_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|132aa|down_2|NC_022271.1_54295_54691_+	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|518aa|down_3|NC_022271.1_54893_56447_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|118aa|down_4|NC_022271.1_56506_56860_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|104aa|down_5|NC_022271.1_56856_57168_-	NA	NA|158aa|down_6|NC_022271.1_57408_57882_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|255aa|down_7|NC_022271.1_58621_59386_+	NA	NA|74aa|down_8|NC_022271.1_59905_60127_-	NA	NA|401aa|down_9|NC_022271.1_60134_61337_-	NA
