assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000468515.1_ASM46851v1	NC_022364	Escherichia coli LY180, complete sequence	1	339344-339437	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CGATGTAACAACGCGCACAGATCAGTCCCC	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|310aa|up_9|NC_022364.1_332222_333152_-,NA|326aa|down_5|NC_022364.1_344138_345116_+	NA|310aa|up_9|NC_022364.1_332222_333152_-	NA	NA|143aa|up_8|NC_022364.1_333278_333707_-	pfam05130, FlgN, FlgN protein	NA|93aa|up_7|NC_022364.1_333719_333998_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|246aa|up_6|NC_022364.1_334078_334816_-	PRK06804, flgA, flagellar basal body P-ring formation protein FlgA	NA|112aa|up_5|NC_022364.1_334897_335233_+	PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|144aa|up_4|NC_022364.1_335235_335667_+	PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|238aa|up_3|NC_022364.1_335666_336380_+	PRK09619, flgD, flagellar hook assembly protein FlgD	NA|401aa|up_2|NC_022364.1_336464_337667_+	PRK06803, flgE, flagellar basal body protein FlaE	NA|246aa|up_1|NC_022364.1_337666_338404_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|262aa|up_0|NC_022364.1_338482_339268_+	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional	NA|222aa|down_0|NC_022364.1_339539_340205_+	PRK12407, flgH, flagellar basal body L-ring protein FlgH	NA|367aa|down_1|NC_022364.1_340219_341320_+	PRK05303, flgI, flagellar basal body P-ring protein FlgI	NA|100aa|down_2|NC_022364.1_341319_341619_+	PRK12708, flgJ, peptidoglycan hydrolase; Reviewed	NA|459aa|down_3|NC_022364.1_341801_343178_+	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated	NA|310aa|down_4|NC_022364.1_343192_344122_+	PRK07192, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|326aa|down_5|NC_022364.1_344138_345116_+	NA	NA|281aa|down_6|NC_022364.1_345174_346017_-	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|403aa|down_7|NC_022364.1_346174_347383_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|305aa|down_8|NC_022364.1_347840_348755_+	NF033376, flg_lateral_LafA, lateral flagellin LafA	NA|439aa|down_9|NC_022364.1_348961_350278_+	PRK08032, fliD, flagellar capping protein; Reviewed
GCF_000468515.1_ASM46851v1	NC_022364	Escherichia coli LY180, complete sequence	2	2935798-2936680	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|254aa|up_9|NC_022364.1_2927610_2928372_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NC_022364.1_2928352_2929402_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NC_022364.1_2929398_2929878_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NC_022364.1_2929877_2930588_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NC_022364.1_2930606_2930918_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NC_022364.1_2931111_2931435_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NC_022364.1_2931484_2932090_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NC_022364.1_2932089_2933517_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NC_022364.1_2933518_2934427_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NC_022364.1_2934678_2935716_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NC_022364.1_2936776_2937070_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NC_022364.1_2937069_2937990_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NC_022364.1_2937986_2938637_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NC_022364.1_2938618_2939365_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NC_022364.1_2939375_2940431_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NC_022364.1_2940442_2940982_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NC_022364.1_2940978_2942541_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NC_022364.1_2942638_2945338_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NC_022364.1_2945532_2945685_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NC_022364.1_2945949_2946684_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000468515.1_ASM46851v1	NC_022364	Escherichia coli LY180, complete sequence	3	2962384-2963023	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA|47aa|down_1|NC_022364.1_2964172_2964313_+	NA|424aa|up_9|NC_022364.1_2951027_2952299_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NC_022364.1_2952289_2952550_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NC_022364.1_2952566_2953142_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NC_022364.1_2953289_2954150_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NC_022364.1_2954146_2954926_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NC_022364.1_2954903_2956313_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NC_022364.1_2956334_2957789_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NC_022364.1_2957858_2958644_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NC_022364.1_2958962_2960240_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NC_022364.1_2960266_2961745_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NC_022364.1_2963362_2964034_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NC_022364.1_2964172_2964313_+	NA	NA|291aa|down_2|NC_022364.1_2964326_2965199_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NC_022364.1_2965258_2966557_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NC_022364.1_2966644_2968282_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NC_022364.1_2968509_2969301_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NC_022364.1_2969371_2969707_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NC_022364.1_2969706_2969955_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NC_022364.1_2970032_2972267_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NC_022364.1_2972314_2973616_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
