The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_022525	Salmonella enterica subsp. enterica serovar Thompson str. RM6836, complete sequence	4707648	1039450	1141329	4707648	protease,holin,head,terminase,tRNA,capsid,lysis,tail,portal	Salmonella_phage(44.64%)	102	NA	NA
WP_001154028.1|1039450_1040254_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|1040246_1041569_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|1041549_1042254_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_017465607.1|1042253_1046720_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_017465608.1|1047064_1048912_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|1049169_1049718_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|1049745_1050393_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|1050454_1051645_-	aspartate transaminase	NA	NA	NA	NA	NA
WP_000977709.1|1051829_1052921_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	1.7e-99
WP_000117867.1|1053526_1054927_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
WP_000762342.1|1055127_1055589_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_021294193.1|1055905_1057120_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_017465610.1|1057365_1058799_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_017465611.1|1058879_1060082_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001262307.1|1060276_1061569_-	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	100.0	3.4e-253
WP_000065276.1|1061613_1061862_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|1061902_1062142_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_010835407.1|1062184_1063342_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.7	7.9e-217
WP_001750117.1|1063304_1066232_-	PD-(D/E)XK nuclease-like domain-containing protein	NA	S4TNL0	Salmonella_phage	99.8	0.0e+00
WP_001750116.1|1066358_1066709_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	96.6	3.2e-60
WP_000551857.1|1066730_1066901_-	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	49.0	9.7e-07
WP_001750115.1|1067297_1067504_+	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	69.1	4.3e-17
WP_001750114.1|1067530_1068472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001230956.1|1068577_1068973_-	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	72.5	3.5e-47
WP_000992434.1|1069077_1069314_+	helix-turn-helix domain-containing protein	NA	A0A0M4QX15	Salmonella_phage	73.1	9.0e-27
WP_010835408.1|1069279_1069654_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	1.9e-63
WP_001540689.1|1069738_1070722_+	replication protein	NA	H6WRX7	Salmonella_phage	100.0	1.9e-163
WP_001750113.1|1070724_1071474_+	ATP-binding protein	NA	H6WRX8	Salmonella_phage	99.2	7.3e-139
WP_000113626.1|1071484_1071832_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	100.0	4.5e-59
WP_000065089.1|1071828_1072149_+	hypothetical protein	NA	H6WRY0	Salmonella_phage	65.5	6.7e-25
WP_000974174.1|1072148_1072394_+	hypothetical protein	NA	Q5G8U9	Enterobacteria_phage	88.9	3.0e-33
WP_000132543.1|1072704_1073922_+	hypothetical protein	NA	J9Q803	Salmonella_phage	53.3	3.1e-118
WP_107251218.1|1073902_1073971_+	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_000802853.1|1074064_1074391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217669.1|1074638_1074872_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_014343878.1|1074988_1075237_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_001750112.1|1075271_1075874_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
WP_001096547.1|1076082_1076694_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	99.5	4.2e-92
WP_001617856.1|1076690_1076837_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_001047630.1|1076826_1077624_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	4.0e-151
WP_001534733.1|1078022_1078148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798705.1|1078283_1078733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001574216.1|1080055_1080385_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984583.1|1080368_1080821_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.7	4.6e-80
WP_031607240.1|1080838_1081288_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	90.4	6.1e-64
WP_001252721.1|1081616_1082120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001750111.1|1082376_1082778_-	PPC domain-containing protein	NA	NA	NA	NA	NA
WP_001102153.1|1083063_1083609_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000623092.1|1083580_1085512_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.9	1.3e-259
WP_000201415.1|1085495_1085699_+	gpW family protein	NA	K7PM10	Enterobacteria_phage	73.8	1.9e-17
WP_000831821.1|1085695_1087276_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	9.6e-189
WP_001189498.1|1087265_1088762_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.2	1.1e-96
WP_000011260.1|1088774_1089122_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_000522566.1|1089176_1090205_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000201485.1|1090262_1090628_+	DNA-packaging protein FI	NA	NA	NA	NA	NA
WP_000083293.1|1090638_1091016_+|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.5e-28
WP_000677089.1|1091002_1091581_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000033885.1|1091577_1091979_+|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000971953.1|1091986_1092733_+	Ig-like domain-containing protein	NA	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000479607.1|1092783_1093179_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_010989052.1|1093175_1093514_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000372075.1|1093485_1096581_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.7	4.8e-277
WP_000447370.1|1096583_1096913_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	71.3	7.3e-43
WP_001152686.1|1096922_1097621_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	1.6e-103
WP_000662738.1|1097627_1098365_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	84.2	9.8e-128
WP_001750110.1|1098262_1098910_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	78.1	1.6e-89
WP_000514902.1|1098971_1102334_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.5	0.0e+00
WP_000178849.1|1102372_1102615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023193196.1|1102668_1105164_+|tail	prophage tail fiber N-terminal domain-containing protein	tail	E5G6P0	Salmonella_phage	76.1	7.3e-159
WP_000143168.1|1105163_1105745_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.3e-94
WP_010835411.1|1106574_1108065_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	98.6	1.6e-254
WP_001536069.1|1108632_1109433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497440.1|1109908_1110115_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
WP_000193775.1|1110541_1113154_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	3.7e-20
WP_000291723.1|1113361_1114372_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|1114537_1115080_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224072.1|1115076_1116186_-	YcbX family protein	NA	NA	NA	NA	NA
WP_001086485.1|1116284_1118393_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000053044.1|1118405_1120313_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_017465789.1|1120327_1121581_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_017465790.1|1121585_1123226_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|1123222_1123786_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|1124041_1124209_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|1124308_1124827_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_017465791.1|1124895_1126656_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_017465792.1|1126841_1127294_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_001674965.1|1127365_1128418_-	porin OmpA	NA	NA	NA	NA	NA
WP_017465793.1|1128775_1129285_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|1129501_1130107_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950861.1|1130093_1132247_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|1132265_1132712_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_017465794.1|1132835_1134890_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
WP_000424187.1|1134925_1135384_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|1135478_1136141_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_001537782.1|1136314_1136728_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|1136772_1137090_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|1137147_1138359_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859416.1|1138573_1139122_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_017465795.1|1139147_1139927_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000072884.1|1139975_1140257_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|1140253_1140583_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374046.1|1140669_1141329_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
>prophage 2
NC_022525	Salmonella enterica subsp. enterica serovar Thompson str. RM6836, complete sequence	4707648	2038579	2045847	4707648		Morganella_phage(33.33%)	8	NA	NA
WP_001157305.1|2038579_2040010_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377042.1|2040083_2040779_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_017465543.1|2040858_2041170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017465542.1|2041819_2043031_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	56.2	4.4e-109
WP_024131163.1|2043290_2043479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2043489_2043702_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_017465541.1|2044156_2045425_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.7	3.5e-226
WP_000394197.1|2045427_2045847_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 3
NC_022525	Salmonella enterica subsp. enterica serovar Thompson str. RM6836, complete sequence	4707648	2219653	2228824	4707648	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195330.1|2219653_2221687_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703143.1|2221927_2222386_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	71.9	2.4e-52
WP_017465874.1|2222557_2223088_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2223144_2223612_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2223658_2224378_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|2224374_2226060_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240418.1|2226282_2227014_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2227073_2227181_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|2227161_2227893_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569168.1|2227876_2228824_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
>prophage 4
NC_022525	Salmonella enterica subsp. enterica serovar Thompson str. RM6836, complete sequence	4707648	4269902	4316975	4707648	tail,holin,tRNA,plate	Burkholderia_phage(36.36%)	49	NA	NA
WP_022544687.1|4269902_4270631_-	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	7.3e-35
WP_017465885.1|4271369_4271825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017465886.1|4271821_4272427_-	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_017465887.1|4272431_4274201_-|tail	tail fiber protein	tail	A0A0M3ULH6	Salmonella_phage	40.5	3.2e-52
WP_000359504.1|4274203_4274836_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_000951730.1|4274828_4275944_-|plate	baseplate J/gp47 family protein	plate	Q6QI99	Burkholderia_phage	52.2	3.1e-101
WP_001093501.1|4275934_4276294_-	GPW/gp25 family protein	NA	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_001095011.1|4276457_4278005_-	membrane protein	NA	B9UDL6	Salmonella_phage	29.9	1.9e-48
WP_000703628.1|4278004_4278934_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.1	7.9e-151
WP_000593184.1|4278930_4279293_-	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_017465888.1|4279620_4280343_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_017465889.1|4280352_4281396_-	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.9	6.5e-77
WP_017465890.1|4281383_4281593_-|tail	tail protein X	tail	A4JWL2	Burkholderia_virus	58.8	2.8e-16
WP_017465891.1|4281592_4282546_-|tail	phage tail protein	tail	A4JWL1	Burkholderia_virus	50.8	2.3e-36
WP_001262486.1|4282545_4284900_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.9	4.0e-66
WP_001185654.1|4284996_4285125_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003639.1|4285084_4285402_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907494.1|4285453_4285978_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729852.1|4285977_4287405_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.1e-194
WP_000875314.1|4287394_4287592_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449433.1|4287588_4288044_-	Gp37 family protein	NA	NA	NA	NA	NA
WP_017465892.1|4288204_4288519_-	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	48.2	1.1e-19
WP_017465893.1|4288531_4289137_-	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.9	4.2e-60
WP_001226439.1|4289139_4289427_-|holin	putative holin	holin	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_000615248.1|4290003_4290351_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_000136394.1|4290481_4291831_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000790028.1|4292175_4293825_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_001541297.1|4294268_4294511_+	outer membrane protein	NA	NA	NA	NA	NA
WP_126489750.1|4294544_4295213_+	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_000977968.1|4295209_4295947_+	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_000750810.1|4295946_4298043_+	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_000982749.1|4298185_4298596_+	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_001252081.1|4298761_4299652_-	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000382570.1|4299666_4301211_-	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_000695415.1|4301342_4302533_-	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000179176.1|4302894_4304004_+	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_017465895.1|4304092_4305451_+	maltoporin	NA	NA	NA	NA	NA
WP_017465896.1|4305614_4306532_+	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000019230.1|4306713_4307211_+	chorismate lyase	NA	NA	NA	NA	NA
WP_000455249.1|4307224_4308097_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000017360.1|4308195_4310616_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000002900.1|4310786_4311155_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000646079.1|4311263_4311872_+	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_001128112.1|4312050_4313376_+	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_001575282.1|4313372_4313486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001030592.1|4313507_4313717_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000416271.1|4313816_4314332_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001039337.1|4314578_4315889_+	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_017465897.1|4315976_4316975_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
