assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000473745.2_ASM47374v3	NZ_CP008739	Pseudomonas aeruginosa VRFPA04 chromosome, complete genome	1	59599-59746	1	CRISPRCasFinder	no		csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	Orphan	GGAGGCTCCAGCGCAGACGCCGTAAGGAGGCTCCGCGATGCCTAGGCAAG	50	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	NA,NA|132aa|down_0|NZ_CP008739.1_60109_60505_+,NA|47aa|down_7|NZ_CP008739.1_68369_68510_+,NA|46aa|down_8|NZ_CP008739.1_68571_68709_+	NA|122aa|up_9|NZ_CP008739.1_36420_36786_-	COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms]	NA|208aa|up_8|NZ_CP008739.1_36793_37417_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|269aa|up_7|NZ_CP008739.1_37602_38409_-	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|403aa|up_6|NZ_CP008739.1_38405_39614_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|296aa|up_5|NZ_CP008739.1_39717_40605_+	cd08482, PBP2_TrpI, The C-terminal substrate binding domain of LysR-type transcriptional regulator TrpI, which is involved in control of tryptophan synthesis, contains type 2 periplasmic binding fold	NA|72aa|up_4|NZ_CP008739.1_40705_40921_+	COG3360, COG3360, Uncharacterized conserved protein [Function unknown]	NA|76aa|up_3|NZ_CP008739.1_41104_41332_+	pfam06649, DUF1161, Protein of unknown function (DUF1161)	NA|563aa|up_2|NZ_CP008739.1_41627_43316_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|4332aa|up_1|NZ_CP008739.1_43428_56424_+	sd00046, FHA_bHelix, beta-helical repeat found in filamentous hemagglutinin and related adhesins and CdiA family proteins	NA|548aa|up_0|NZ_CP008739.1_56378_58022_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|132aa|down_0|NZ_CP008739.1_60109_60505_+	NA	NA|470aa|down_1|NZ_CP008739.1_60769_62179_-	COG3174, COG3174, Predicted membrane protein [Function unknown]	NA|458aa|down_2|NZ_CP008739.1_62342_63716_+	COG5585, COG5585, NAD+--asparagine ADP-ribosyltransferase [Signal transduction mechanisms]	NA|229aa|down_3|NZ_CP008739.1_64212_64899_+	COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]	NA|118aa|down_4|NZ_CP008739.1_64929_65283_+	COG4259, COG4259, Uncharacterized protein conserved in bacteria [Function unknown]	NA|222aa|down_5|NZ_CP008739.1_65279_65945_+	pfam05643, DUF799, Putative bacterial lipoprotein (DUF799)	NA|128aa|down_6|NZ_CP008739.1_65959_66343_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|47aa|down_7|NZ_CP008739.1_68369_68510_+	NA	NA|46aa|down_8|NZ_CP008739.1_68571_68709_+	NA	NA|611aa|down_9|NZ_CP008739.1_69338_71171_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)
GCF_000473745.2_ASM47374v3	NZ_CP008739	Pseudomonas aeruginosa VRFPA04 chromosome, complete genome	2	302245-302358	2	CRISPRCasFinder	no		csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	Orphan	TCATACCTTGCCCTCCAGTTCTTTGGCC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	NA|185aa|up_7|NZ_CP008739.1_293339_293894_+,NA|251aa|up_5|NZ_CP008739.1_294662_295415_+,NA|168aa|up_2|NZ_CP008739.1_297168_297672_+,NA	NA|231aa|up_9|NZ_CP008739.1_291882_292575_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|165aa|up_8|NZ_CP008739.1_292579_293074_-	COG1683, COG1683, Uncharacterized conserved protein [Function unknown]	NA|185aa|up_7|NZ_CP008739.1_293339_293894_+	NA	NA|233aa|up_6|NZ_CP008739.1_293915_294614_-	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]	NA|251aa|up_5|NZ_CP008739.1_294662_295415_+	NA	NA|340aa|up_4|NZ_CP008739.1_295434_296454_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|204aa|up_3|NZ_CP008739.1_296452_297064_+	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs	NA|168aa|up_2|NZ_CP008739.1_297168_297672_+	NA	NA|351aa|up_1|NZ_CP008739.1_297650_298703_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|796aa|up_0|NZ_CP008739.1_298813_301201_+	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only]	NA|385aa|down_0|NZ_CP008739.1_303238_304393_-	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|366aa|down_1|NZ_CP008739.1_304447_305545_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|368aa|down_2|NZ_CP008739.1_305963_307067_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|457aa|down_3|NZ_CP008739.1_307182_308553_-	PRK07480, PRK07480, putative aminotransferase; Validated	NA|453aa|down_4|NZ_CP008739.1_308618_309977_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|251aa|down_5|NZ_CP008739.1_310017_310770_-	pfam07722, Peptidase_C26, Peptidase C26	NA|294aa|down_6|NZ_CP008739.1_314081_314963_-	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|459aa|down_7|NZ_CP008739.1_315455_316832_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|354aa|down_8|NZ_CP008739.1_317087_318149_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|222aa|down_9|NZ_CP008739.1_318209_318875_+	COG1309, AcrR, Transcriptional regulator [Transcription]
GCF_000473745.2_ASM47374v3	NZ_CP008739	Pseudomonas aeruginosa VRFPA04 chromosome, complete genome	3	313996-314109	3	CRISPRCasFinder	no		csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	Orphan	TCATACCTTGCCCTCCAGTTCTTTGGCC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	NA,NA	NA|351aa|up_9|NZ_CP008739.1_297650_298703_-	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term	NA|796aa|up_8|NZ_CP008739.1_298813_301201_+	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only]	NA|290aa|up_7|NZ_CP008739.1_301378_302248_-	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|294aa|up_6|NZ_CP008739.1_302330_303212_-	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|385aa|up_5|NZ_CP008739.1_303238_304393_-	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|366aa|up_4|NZ_CP008739.1_304447_305545_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|368aa|up_3|NZ_CP008739.1_305963_307067_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|457aa|up_2|NZ_CP008739.1_307182_308553_-	PRK07480, PRK07480, putative aminotransferase; Validated	NA|453aa|up_1|NZ_CP008739.1_308618_309977_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|251aa|up_0|NZ_CP008739.1_310017_310770_-	pfam07722, Peptidase_C26, Peptidase C26	NA|459aa|down_0|NZ_CP008739.1_315455_316832_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|354aa|down_1|NZ_CP008739.1_317087_318149_+	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|222aa|down_2|NZ_CP008739.1_318209_318875_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|293aa|down_3|NZ_CP008739.1_319037_319916_+	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase	NA|369aa|down_4|NZ_CP008739.1_320001_321108_+	PRK13551, PRK13551, agmatine deiminase; Provisional	NA|461aa|down_5|NZ_CP008739.1_321243_322626_-	pfam03573, OprD, outer membrane porin, OprD family	NA|324aa|down_6|NZ_CP008739.1_323241_324213_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|321aa|down_7|NZ_CP008739.1_324325_325288_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|319aa|down_8|NZ_CP008739.1_325340_326297_-	cd11592, Agmatinase_PAH, Agmatinase-like family includes proclavaminic acid amidinohydrolase	NA|462aa|down_9|NZ_CP008739.1_326352_327738_+	cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain
GCF_000473745.2_ASM47374v3	NZ_CP008739	Pseudomonas aeruginosa VRFPA04 chromosome, complete genome	4	1368824-1368914	4	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	Unclear	CGATCCGTAGGGCGGATAACGCC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	NA|128aa|up_5|NZ_CP008739.1_1363161_1363545_+,NA|128aa|down_3|NZ_CP008739.1_1372374_1372758_+	NA|258aa|up_9|NZ_CP008739.1_1358876_1359650_+	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|484aa|up_8|NZ_CP008739.1_1359728_1361180_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|305aa|up_7|NZ_CP008739.1_1361262_1362177_-	PRK11175, PRK11175, universal stress protein UspE; Provisional	NA|269aa|up_6|NZ_CP008739.1_1362261_1363068_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|128aa|up_5|NZ_CP008739.1_1363161_1363545_+	NA	NA|141aa|up_4|NZ_CP008739.1_1363645_1364068_+	pfam13511, DUF4124, Domain of unknown function (DUF4124)	NA|120aa|up_3|NZ_CP008739.1_1364128_1364488_+	TIGR02266, gmx_TIGR02266, Myxococcus xanthus paralogous domain TIGR02266	NA|444aa|up_2|NZ_CP008739.1_1364492_1365824_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|336aa|up_1|NZ_CP008739.1_1365820_1366828_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|258aa|up_0|NZ_CP008739.1_1368021_1368795_+	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|484aa|down_0|NZ_CP008739.1_1368941_1370393_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|305aa|down_1|NZ_CP008739.1_1370475_1371390_-	PRK11175, PRK11175, universal stress protein UspE; Provisional	NA|269aa|down_2|NZ_CP008739.1_1371474_1372281_-	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|128aa|down_3|NZ_CP008739.1_1372374_1372758_+	NA	NA|141aa|down_4|NZ_CP008739.1_1372858_1373281_+	pfam13511, DUF4124, Domain of unknown function (DUF4124)	NA|120aa|down_5|NZ_CP008739.1_1373341_1373701_+	TIGR02266, gmx_TIGR02266, Myxococcus xanthus paralogous domain TIGR02266	NA|444aa|down_6|NZ_CP008739.1_1373705_1375037_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|517aa|down_7|NZ_CP008739.1_1377178_1378729_+	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|224aa|down_8|NZ_CP008739.1_1379692_1380364_-	COG1714, COG1714, Predicted membrane protein/domain [Function unknown]	NA|327aa|down_9|NZ_CP008739.1_1381164_1382145_-	COG1300, SpoIIM, Uncharacterized membrane protein [Function unknown]
GCF_000473745.2_ASM47374v3	NZ_CP008739	Pseudomonas aeruginosa VRFPA04 chromosome, complete genome	5	3897226-3897467	1	PILER-CR	no		csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	Orphan	GCCGCTTATCCGCGGAATCGGCGGATAACGCCCATGGCGTTATTCGCCCTAC	52	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,PD-DExK,WYL,csx1,DinG,cas3	NA,NA|105aa|down_0|NZ_CP008739.1_3900238_3900553_+,NA|266aa|down_2|NZ_CP008739.1_3902225_3903023_+,NA|82aa|down_8|NZ_CP008739.1_3920674_3920920_+	NA|255aa|up_9|NZ_CP008739.1_3885773_3886538_-	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|73aa|up_8|NZ_CP008739.1_3886538_3886757_-	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown]	NA|470aa|up_7|NZ_CP008739.1_3886834_3888244_-	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional	NA|440aa|up_6|NZ_CP008739.1_3888422_3889742_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|142aa|up_5|NZ_CP008739.1_3889734_3890160_-	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|525aa|up_4|NZ_CP008739.1_3890518_3892093_+	PRK13272, treA, alpha,alpha-trehalase TreA	NA|313aa|up_3|NZ_CP008739.1_3892096_3893035_-	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|287aa|up_2|NZ_CP008739.1_3893135_3893996_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|227aa|up_1|NZ_CP008739.1_3894092_3894773_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|473aa|up_0|NZ_CP008739.1_3894854_3896273_+	pfam03573, OprD, outer membrane porin, OprD family	NA|105aa|down_0|NZ_CP008739.1_3900238_3900553_+	NA	NA|171aa|down_1|NZ_CP008739.1_3901136_3901649_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|266aa|down_2|NZ_CP008739.1_3902225_3903023_+	NA	NA|4343aa|down_3|NZ_CP008739.1_3903155_3916184_+	PRK05691, PRK05691, peptide synthase; Validated	NA|255aa|down_4|NZ_CP008739.1_3916257_3917022_-	COG3208, GrsT, Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|188aa|down_5|NZ_CP008739.1_3917666_3918230_+	PRK07037, PRK07037, extracytoplasmic-function sigma-70 factor; Validated	NA|338aa|down_6|NZ_CP008739.1_3918309_3919323_-	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain	NA|305aa|down_7|NZ_CP008739.1_3919498_3920413_-	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|82aa|down_8|NZ_CP008739.1_3920674_3920920_+	NA	NA|725aa|down_9|NZ_CP008739.1_3921685_3923860_-	pfam04632, FUSC, Fusaric acid resistance protein family
