assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000477435.1_ASM47743v1	NC_022576	Candidatus Symbiobacter mobilis CR, complete sequence	1	882539-883700	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1	RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	Type III-B,Type III-C,Type III-A,Type III-D	GTCTAAAGACATGCCCTGATCTCAAAGGGATTAAGAC,GTCTAAAGACATGCCCTGATCTCAAAGGGATTAAGAC,GTCTAAAGACATGCCCTGATCTCAAAGGGATTAAGAC	37,37,37	1	1	883210-883243	NC_022576.1_793894-793861	NA:NA:NA	16,16,16	16	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	NA|491aa|up_0|NC_022576.1_880856_882329_+,NA|112aa|down_3|NC_022576.1_888866_889202_+,NA|85aa|down_4|NC_022576.1_889441_889696_+,NA|361aa|down_5|NC_022576.1_890049_891132_+,NA|221aa|down_6|NC_022576.1_891186_891849_+,NA|49aa|down_8|NC_022576.1_893243_893390_+	cmr3gr5|413aa|up_9|NC_022576.1_873737_874976_+	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cmr4gr7|326aa|up_8|NC_022576.1_875012_875990_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|188aa|up_7|NC_022576.1_876001_876565_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|418aa|up_6|NC_022576.1_876644_877898_+	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|92aa|up_5|NC_022576.1_878040_878316_+	pfam08681, DUF1778, Protein of unknown function (DUF1778)	NA|168aa|up_4|NC_022576.1_878316_878820_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	cas2|95aa|up_3|NC_022576.1_878947_879232_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|324aa|up_2|NC_022576.1_879298_880270_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|112aa|up_1|NC_022576.1_880344_880680_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|491aa|up_0|NC_022576.1_880856_882329_+	NA	NA|278aa|down_0|NC_022576.1_883718_884552_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	csx1|381aa|down_1|NC_022576.1_885784_886927_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|576aa|down_2|NC_022576.1_887120_888848_+	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|112aa|down_3|NC_022576.1_888866_889202_+	NA	NA|85aa|down_4|NC_022576.1_889441_889696_+	NA	NA|361aa|down_5|NC_022576.1_890049_891132_+	NA	NA|221aa|down_6|NC_022576.1_891186_891849_+	NA	csx1|403aa|down_7|NC_022576.1_892042_893251_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	NA|49aa|down_8|NC_022576.1_893243_893390_+	NA	NA|51aa|down_9|NC_022576.1_893575_893728_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family
GCF_000477435.1_ASM47743v1	NC_022576	Candidatus Symbiobacter mobilis CR, complete sequence	2	884646-885590	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	csm5gr7,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1	RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	Type III-B,Type III-C,Type III-A,Type III-D	GTCTAAAGACATGCCCTGATCTCAAAGGGATTAAGAC,GTCTAAAGACATGCCCTGATCTCAAAGGGATTAAGAC,GTCTAAAGACATGCCCTGATCTCAAAGGGATTAAGAC	37,37,37	0	0	NA	NA	NA:NA:NA	13,13,13	13	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D	RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	NA|491aa|up_1|NC_022576.1_880856_882329_+,NA|112aa|down_2|NC_022576.1_888866_889202_+,NA|85aa|down_3|NC_022576.1_889441_889696_+,NA|361aa|down_4|NC_022576.1_890049_891132_+,NA|221aa|down_5|NC_022576.1_891186_891849_+,NA|49aa|down_7|NC_022576.1_893243_893390_+	cmr4gr7|326aa|up_9|NC_022576.1_875012_875990_+	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr5gr11|188aa|up_8|NC_022576.1_876001_876565_+	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr6gr7|418aa|up_7|NC_022576.1_876644_877898_+	COG1604, COG1604, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|92aa|up_6|NC_022576.1_878040_878316_+	pfam08681, DUF1778, Protein of unknown function (DUF1778)	NA|168aa|up_5|NC_022576.1_878316_878820_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	cas2|95aa|up_4|NC_022576.1_878947_879232_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|324aa|up_3|NC_022576.1_879298_880270_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|112aa|up_2|NC_022576.1_880344_880680_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|491aa|up_1|NC_022576.1_880856_882329_+	NA	NA|278aa|up_0|NC_022576.1_883718_884552_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	csx1|381aa|down_0|NC_022576.1_885784_886927_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|576aa|down_1|NC_022576.1_887120_888848_+	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|112aa|down_2|NC_022576.1_888866_889202_+	NA	NA|85aa|down_3|NC_022576.1_889441_889696_+	NA	NA|361aa|down_4|NC_022576.1_890049_891132_+	NA	NA|221aa|down_5|NC_022576.1_891186_891849_+	NA	csx1|403aa|down_6|NC_022576.1_892042_893251_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	NA|49aa|down_7|NC_022576.1_893243_893390_+	NA	NA|51aa|down_8|NC_022576.1_893575_893728_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|89aa|down_9|NC_022576.1_894105_894372_+	pfam13711, DUF4160, Domain of unknown function (DUF4160)
GCF_000477435.1_ASM47743v1	NC_022576	Candidatus Symbiobacter mobilis CR, complete sequence	3	1988160-1988321	3	CRISPRCasFinder	no		RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	Orphan	CAGTACGGCAAGTGGGTACAACAACGCTGGGGCGGTTTTGCGTAAGTCTAG	51	0	0	NA	NA	NA	1	1	Orphan	RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	NA,NA|123aa|down_2|NC_022576.1_1990796_1991165_+,NA|184aa|down_5|NC_022576.1_1994423_1994975_+,NA|262aa|down_6|NC_022576.1_1994986_1995772_+,NA|424aa|down_7|NC_022576.1_1995797_1997069_+	NA|450aa|up_9|NC_022576.1_1976010_1977360_+	cd13708, PBP2_BvgS_like_1, Putative sensor domain similar to BvgS; the type 2 periplasmic binding protein domain	NA|363aa|up_8|NC_022576.1_1977455_1978544_-	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|258aa|up_7|NC_022576.1_1978864_1979638_+	TIGR02623, Glucose-1-phosphate_cytidylyltransferase, glucose-1-phosphate cytidylyltransferase	NA|400aa|up_6|NC_022576.1_1979598_1980798_+	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs	NA|452aa|up_5|NC_022576.1_1980772_1982128_+	PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional	NA|721aa|up_4|NC_022576.1_1982597_1984760_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|371aa|up_3|NC_022576.1_1984798_1985911_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|85aa|up_2|NC_022576.1_1985959_1986214_-	pfam07769, PsiF_repeat, psiF repeat	NA|338aa|up_1|NC_022576.1_1986305_1987319_-	pfam01384, PHO4, Phosphate transporter family	NA|216aa|up_0|NC_022576.1_1987330_1987978_-	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|344aa|down_0|NC_022576.1_1988455_1989487_-	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad	NA|325aa|down_1|NC_022576.1_1989533_1990508_-	PRK11025, PRK11025, 23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA|123aa|down_2|NC_022576.1_1990796_1991165_+	NA	NA|924aa|down_3|NC_022576.1_1991175_1993947_+	PRK10811, rne, ribonuclease E; Reviewed	NA|104aa|down_4|NC_022576.1_1993999_1994311_+	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ	NA|184aa|down_5|NC_022576.1_1994423_1994975_+	NA	NA|262aa|down_6|NC_022576.1_1994986_1995772_+	NA	NA|424aa|down_7|NC_022576.1_1995797_1997069_+	NA	NA|624aa|down_8|NC_022576.1_1997192_1999064_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|645aa|down_9|NC_022576.1_1999121_2001056_+	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
GCF_000477435.1_ASM47743v1	NC_022576	Candidatus Symbiobacter mobilis CR, complete sequence	4	2435422-2435510	4	CRISPRCasFinder	no	DinG,cas3f,cas6f,cas7f,cas5f,cas8f	RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	Type I-F	TTTCTAAGCTGCCTATTCGGCAGTGAAG	28	0	0	NA	NA	I-F	1	1	TypeI-F	RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	NA|210aa|up_7|NC_022576.1_2425258_2425888_+,NA|63aa|down_8|NC_022576.1_2444672_2444861_+,NA|95aa|down_9|NC_022576.1_2444908_2445193_-	NA|138aa|up_9|NC_022576.1_2422277_2422691_-	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR	DinG|703aa|up_8|NC_022576.1_2422917_2425026_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|210aa|up_7|NC_022576.1_2425258_2425888_+	NA	NA|420aa|up_6|NC_022576.1_2425913_2427173_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|217aa|up_5|NC_022576.1_2427235_2427886_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|332aa|up_4|NC_022576.1_2428070_2429066_+	smart00870, Asparaginase, Asparaginase, found in various plant, animal and bacterial cells	NA|219aa|up_3|NC_022576.1_2429249_2429906_-	PRK00279, adk, adenylate kinase; Reviewed	cas3f|1133aa|up_2|NC_022576.1_2430248_2433647_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	NA|191aa|up_1|NC_022576.1_2433777_2434350_-	pfam13470, PIN_3, PIN domain	NA|155aa|up_0|NC_022576.1_2434350_2434815_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|278aa|down_0|NC_022576.1_2435552_2436386_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	cas6f|186aa|down_1|NC_022576.1_2437933_2438491_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|346aa|down_2|NC_022576.1_2438504_2439542_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|352aa|down_3|NC_022576.1_2439568_2440624_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|432aa|down_4|NC_022576.1_2440613_2441909_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	NA|148aa|down_5|NC_022576.1_2443298_2443742_+	PRK02268, PRK02268, hypothetical protein; Provisional	NA|86aa|down_6|NC_022576.1_2443792_2444050_+	cd08862, SRPBCC_Smu440-like, Ligand-binding SRPBCC domain of Streptococcus mutans Smu	NA|161aa|down_7|NC_022576.1_2444200_2444683_+	cd18687, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|63aa|down_8|NC_022576.1_2444672_2444861_+	NA	NA|95aa|down_9|NC_022576.1_2444908_2445193_-	NA
GCF_000477435.1_ASM47743v1	NC_022576	Candidatus Symbiobacter mobilis CR, complete sequence	5	2436455-2437804	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DinG,cas3f,cas6f,cas7f,cas5f,cas8f	RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	Type I-F	TTTCTAAGCTGCCTATTCGGCAGTGAAG,TTTCTAAGCTGCCTATTCGGCAGTGAAG,TTTCTAAGCTGCCTATTCGGCAGTGAAG	28,28,28	0	0	NA	NA	I-F:I-F:I-F	22,22,22	22	TypeI-F	RT,cas6,cas10,csm3gr7,csm4gr5,csm5gr7,csx1,cmr1gr7,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas2,cas1,DEDDh,WYL,c2c9_V-U4,DinG,cas3f,cas6f,cas7f,cas5f,cas8f,PD-DExK	NA|210aa|up_8|NC_022576.1_2425258_2425888_+,NA|63aa|down_7|NC_022576.1_2444672_2444861_+,NA|95aa|down_8|NC_022576.1_2444908_2445193_-	DinG|703aa|up_9|NC_022576.1_2422917_2425026_-	PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional	NA|210aa|up_8|NC_022576.1_2425258_2425888_+	NA	NA|420aa|up_7|NC_022576.1_2425913_2427173_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|217aa|up_6|NC_022576.1_2427235_2427886_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|332aa|up_5|NC_022576.1_2428070_2429066_+	smart00870, Asparaginase, Asparaginase, found in various plant, animal and bacterial cells	NA|219aa|up_4|NC_022576.1_2429249_2429906_-	PRK00279, adk, adenylate kinase; Reviewed	cas3f|1133aa|up_3|NC_022576.1_2430248_2433647_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	NA|191aa|up_2|NC_022576.1_2433777_2434350_-	pfam13470, PIN_3, PIN domain	NA|155aa|up_1|NC_022576.1_2434350_2434815_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|278aa|up_0|NC_022576.1_2435552_2436386_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	cas6f|186aa|down_0|NC_022576.1_2437933_2438491_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|346aa|down_1|NC_022576.1_2438504_2439542_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|352aa|down_2|NC_022576.1_2439568_2440624_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|432aa|down_3|NC_022576.1_2440613_2441909_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	NA|148aa|down_4|NC_022576.1_2443298_2443742_+	PRK02268, PRK02268, hypothetical protein; Provisional	NA|86aa|down_5|NC_022576.1_2443792_2444050_+	cd08862, SRPBCC_Smu440-like, Ligand-binding SRPBCC domain of Streptococcus mutans Smu	NA|161aa|down_6|NC_022576.1_2444200_2444683_+	cd18687, PIN_VapC-like, uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|63aa|down_7|NC_022576.1_2444672_2444861_+	NA	NA|95aa|down_8|NC_022576.1_2444908_2445193_-	NA	NA|91aa|down_9|NC_022576.1_2445853_2446126_+	pfam10387, DUF2442, Protein of unknown function (DUF2442)
