The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	210091	217853	2554693	holin	Catovirus(33.33%)	7	NA	NA
WP_012897045.1|210091_210928_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SAS8	Catovirus	31.6	1.3e-06
WP_012897046.1|210917_211919_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.6	6.6e-10
WP_012897047.1|211920_212808_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_012897048.1|212804_214031_+	glycerophosphoryl diester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	37.6	4.0e-33
WP_012897049.1|214041_214479_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A221SAS8	Streptomyces_phage	39.3	4.3e-14
WP_012897050.1|214605_215988_-	family 25 glycosyl hydrolase	NA	Q71JA9	Lactobacillus_phage	31.6	1.6e-09
WP_003129822.1|216371_217853_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	2.1e-97
>prophage 2
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	269038	276092	2554693		Lactococcus_phage(50.0%)	7	NA	NA
WP_012897089.1|269038_271282_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	63.0	2.0e-272
WP_003131196.1|271284_271884_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	55.3	2.1e-51
WP_012897090.1|271992_272499_-	DUF2325 domain-containing protein	NA	NA	NA	NA	NA
WP_038603099.1|272789_274079_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	56.4	9.7e-123
WP_012897092.1|275080_275281_+	hypothetical protein	NA	Q9AZK6	Lactococcus_phage	55.8	3.3e-06
WP_012897093.1|275411_275612_+	cold shock domain-containing protein	NA	Q9AZD3	Lactococcus_phage	50.8	6.3e-13
WP_011835124.1|275891_276092_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	93.9	2.4e-28
>prophage 3
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	439756	451888	2554693	tRNA	Streptococcus_phage(40.0%)	14	NA	NA
WP_003131595.1|439756_440074_+	thioredoxin family protein	NA	A0A0K2FIM3	Achromobacter_phage	30.4	4.5e-05
WP_012897224.1|440159_440786_+|tRNA	DUF4479 and tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
WP_038603144.1|440948_442289_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012897226.1|442379_442769_+	single-stranded DNA-binding protein	NA	A0A0K0MWE1	Streptococcus_phage	45.8	1.1e-24
WP_003131589.1|442888_443173_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	44.1	3.1e-13
WP_012897227.1|443260_444889_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	1.3e-156
WP_012897228.1|444934_445747_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	38.1	4.1e-34
WP_012897229.1|445917_447360_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	33.0	1.4e-32
WP_003131580.1|447352_448054_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.7	1.2e-42
WP_012897230.1|448231_448867_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	65.0	5.4e-74
WP_012897231.1|448999_449860_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	44.8	4.3e-66
WP_038603148.1|449911_450694_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_011675472.1|450686_451013_+	DNA replication initiation control protein YabA	NA	NA	NA	NA	NA
WP_012897233.1|451012_451888_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	65.4	6.6e-99
>prophage 4
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	995916	1036870	2554693	head,integrase,terminase,tail,holin,capsid,protease,portal	Lactococcus_phage(86.96%)	56	989947:989963	1014167:1014183
989947:989963	attL	ATAAAATCAATTGAAAG	NA	NA	NA	NA
WP_038603258.1|995916_997059_-|integrase	site-specific integrase	integrase	A0A059NT56	Lactococcus_phage	91.8	1.8e-189
WP_038603260.1|998109_999165_-	endonuclease	NA	A0A1S5SAB0	Streptococcus_phage	61.1	2.2e-120
WP_038603262.1|999245_999680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038603264.1|999689_1000025_-	helix-turn-helix transcriptional regulator	NA	Q9AZF5	Lactococcus_phage	52.7	2.7e-24
WP_038603266.1|1000317_1000509_+	antirepressor	NA	Q9AZF4	Lactococcus_phage	95.2	1.6e-26
WP_038603268.1|1000525_1000771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038603270.1|1000762_1001092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038603272.1|1001191_1001905_+	antirepressor	NA	A0A059NT90	Lactococcus_phage	97.0	3.6e-127
WP_011834775.1|1001917_1002154_+	helix-turn-helix domain-containing protein	NA	A0A059NT59	Lactococcus_phage	100.0	4.3e-37
WP_144242115.1|1002273_1002492_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012898043.1|1002796_1003033_+	DUF1408 domain-containing protein	NA	Q9MC36	Lactococcus_phage	96.2	8.7e-38
WP_051880121.1|1003138_1004005_+	hypothetical protein	NA	A0A286QQK1	Streptococcus_phage	42.3	1.3e-41
WP_038603838.1|1004033_1005074_+	DUF1351 domain-containing protein	NA	A5GZ46	Lactococcus_phage	96.0	6.6e-162
WP_080716014.1|1005316_1006162_+	DnaD domain protein	NA	A5GZ47	Lactococcus_phage	61.6	1.6e-65
WP_038603278.1|1006154_1006397_+	hypothetical protein	NA	A5GZ49	Lactococcus_phage	92.5	3.1e-38
WP_038603280.1|1006405_1006825_+	RusA family crossover junction endodeoxyribonuclease	NA	A7DYE2	Streptococcus_phage	38.7	4.0e-17
WP_038603286.1|1007071_1007434_+	DUF658 family protein	NA	A0A1P8BLN7	Lactococcus_phage	96.7	3.4e-57
WP_038603288.1|1007444_1007696_+	hypothetical protein	NA	A0A1P8BLV4	Lactococcus_phage	84.3	1.7e-31
WP_038603290.1|1007855_1008065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038603292.1|1008061_1008700_+	DUF1642 domain-containing protein	NA	Q9AYU5	Lactococcus_phage	41.7	1.7e-27
WP_038603294.1|1008696_1008984_+	hypothetical protein	NA	Q9AZU4	Lactococcus_phage	97.9	4.1e-50
WP_038603297.1|1008980_1009400_+	dUTP diphosphatase	NA	Q9AZU3	Lactococcus_phage	95.7	3.1e-70
WP_038603300.1|1009402_1009885_+	hypothetical protein	NA	Q9B000	Lactococcus_phage	78.3	4.8e-67
WP_158423211.1|1009907_1010069_+	hypothetical protein	NA	Q9MCF7	Lactococcus_phage	96.2	2.8e-24
WP_038603305.1|1010423_1011230_+	hypothetical protein	NA	A0A191KBM4	Streptococcus_virus	45.6	8.9e-58
WP_038603307.1|1011276_1011507_+	hypothetical protein	NA	Q94M84	Lactococcus_phage	78.9	3.0e-27
WP_158423212.1|1011503_1011677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038603309.1|1011676_1011913_+	hypothetical protein	NA	A0A1W6JL28	Lactococcus_phage	74.4	6.9e-27
WP_080716003.1|1011909_1012077_+	hypothetical protein	NA	A0A1P8BKX9	Lactococcus_phage	83.6	8.6e-24
WP_029344328.1|1012257_1012443_+	hypothetical protein	NA	Q8LTR8	Lactococcus_phage	68.9	3.6e-15
WP_038603311.1|1012439_1012724_+	hypothetical protein	NA	A0A1P8BL62	Lactococcus_phage	84.8	3.5e-17
WP_158423213.1|1012713_1012851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038603312.1|1013240_1013534_+	DUF1359 domain-containing protein	NA	Q9AZ70	Lactococcus_phage	64.9	4.3e-26
WP_038603315.1|1013535_1013844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002819803.1|1013840_1014026_+	transcriptional regulator	NA	Q8LTL6	Lactococcus_phage	100.0	3.2e-27
WP_010905372.1|1014106_1014529_+	RinA family protein	NA	Q9AZM9	Lactococcus_phage	100.0	8.5e-52
1014167:1014183	attR	ATAAAATCAATTGAAAG	NA	NA	NA	NA
WP_038603319.1|1015023_1015314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038603321.1|1015317_1015833_+	HNH endonuclease	NA	Q9AZT3	Lactococcus_phage	98.2	1.9e-98
WP_038603323.1|1015959_1016415_+|terminase	phage terminase small subunit P27 family	terminase	Q8LTL3	Lactococcus_phage	98.7	1.9e-81
WP_038603326.1|1016404_1018315_+|terminase	terminase large subunit	terminase	Q8LTL2	Lactococcus_phage	96.9	0.0e+00
WP_038603328.1|1018283_1018493_+	DUF1056 family protein	NA	Q94MB1	Lactococcus_phage	98.6	5.0e-29
WP_080716004.1|1018489_1019668_+|portal	phage portal protein	portal	Q77P35	Lactococcus_phage	97.2	2.3e-219
WP_002819795.1|1019713_1020418_+|protease	Clp protease ClpP	protease	Q9AZS8	Lactococcus_phage	100.0	4.2e-120
WP_038603331.1|1020429_1021653_+|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	63.7	4.9e-140
WP_038603334.1|1021668_1021989_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q9AZS6	Lactococcus_phage	98.1	2.0e-53
WP_038603336.1|1021966_1022317_+|head	phage head closure protein	head	Q8LTK7	Lactococcus_phage	96.6	1.8e-55
WP_038603338.1|1022318_1022825_+	hypothetical protein	NA	Q9AZS4	Lactococcus_phage	98.2	5.7e-87
WP_038603340.1|1022821_1023217_+	DUF806 family protein	NA	Q8LTK5	Lactococcus_phage	90.8	8.5e-62
WP_038603342.1|1023247_1023862_+|tail	tail protein	tail	Q9AZS2	Lactococcus_phage	87.0	6.1e-91
WP_038603343.1|1024614_1029537_+|tail	phage tail tape measure protein	tail	Q9AZS0	Lactococcus_phage	94.4	0.0e+00
WP_038603345.1|1029539_1031075_+|tail	phage tail protein	tail	Q9AZR9	Lactococcus_phage	95.7	4.5e-284
WP_051880123.1|1031074_1034536_+|tail	phage tail protein	tail	Q9AZL2	Lactococcus_phage	48.3	8.8e-296
WP_012897681.1|1034555_1034858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038603350.1|1034859_1035321_+|holin	phage holin	holin	Q8LTJ7	Lactococcus_phage	91.5	1.5e-46
WP_038603352.1|1035330_1036245_+	lysozyme	NA	Q8LTJ6	Lactococcus_phage	88.9	8.4e-145
WP_012897990.1|1036465_1036870_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	48.8	2.2e-28
>prophage 5
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	1080073	1103583	2554693		Staphylococcus_phage(21.43%)	22	NA	NA
WP_003130964.1|1080073_1080766_+	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.4	2.7e-31
WP_012897609.1|1080758_1081694_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_012897610.1|1081795_1082773_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.0	1.9e-118
WP_012897611.1|1083180_1085349_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.0	6.6e-257
WP_003130968.1|1085484_1085907_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.3	2.3e-12
WP_012897612.1|1085908_1086127_-	redoxin NrdH	NA	C3U2K9	Lactococcus_phage	47.6	7.6e-12
WP_012897613.1|1086300_1086939_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_012897614.1|1087213_1089148_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	43.5	1.1e-125
WP_003130975.1|1089352_1089892_+	cysteine hydrolase family protein	NA	NA	NA	NA	NA
WP_012897615.1|1089884_1090718_+	3'-5' exonuclease	NA	A0A0K2SUJ2	Clostridium_phage	39.4	3.1e-21
WP_003130977.1|1090714_1091164_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003130980.1|1091438_1093913_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	32.2	4.2e-98
WP_003130981.1|1093938_1094844_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_012897616.1|1095312_1096401_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.8	1.9e-50
WP_012897617.1|1096400_1097051_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.1	9.4e-42
WP_012897618.1|1097059_1098256_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	51.3	3.2e-112
WP_012897619.1|1098283_1098748_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	53.7	1.8e-39
WP_012897620.1|1098850_1099303_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_003130995.1|1099363_1100269_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.2	5.4e-11
WP_012897621.1|1100418_1100862_+	divergent PAP2 family protein	NA	NA	NA	NA	NA
WP_012897622.1|1101001_1102624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012897623.1|1102626_1103583_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	37.5	4.0e-49
>prophage 6
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	1546919	1557364	2554693	holin	Lactococcus_phage(62.5%)	9	NA	NA
WP_038603502.1|1546919_1548050_-	ImmA/IrrE family metallo-endopeptidase	NA	B6SBZ6	Clostridium_virus	34.5	9.9e-47
WP_038603504.1|1548833_1549013_-	hypothetical protein	NA	Q9AZG2	Lactococcus_phage	93.2	6.6e-22
WP_038603874.1|1549097_1550381_-	LysM peptidoglycan-binding domain-containing protein	NA	B5SP49	Lactococcus_phage	92.1	3.1e-222
WP_038603506.1|1550389_1550614_-|holin	holin	holin	Q8LTP5	Lactococcus_phage	94.6	1.8e-32
WP_015968020.1|1550603_1550906_-	hypothetical protein	NA	Q8LTP6	Lactococcus_phage	100.0	2.7e-52
WP_038603509.1|1551888_1553829_-	hypothetical protein	NA	A0A059NT86	Lactococcus_phage	69.4	2.0e-233
WP_003130477.1|1554591_1554927_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_012898054.1|1555110_1555821_+	response regulator transcription factor	NA	A0A1V0SGR9	Hokovirus	29.1	2.0e-05
WP_012898055.1|1555810_1557364_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	39.1	8.6e-33
>prophage 7
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	1664255	1674556	2554693		Synechococcus_phage(33.33%)	8	NA	NA
WP_012898135.1|1664255_1665812_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	45.3	6.8e-70
WP_012898136.1|1665987_1666530_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.3	2.3e-09
WP_012898137.1|1666666_1667704_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_003130052.1|1667834_1668365_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038603550.1|1668415_1670005_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	34.1	1.1e-11
WP_012898139.1|1670170_1670719_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	31.7	7.2e-19
WP_012898140.1|1670747_1671764_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	M4QRQ6	Synechococcus_phage	41.8	6.4e-61
WP_038603552.1|1671952_1674556_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	33.1	8.5e-126
>prophage 8
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	1746507	1821085	2554693	head,tail,terminase,integrase,capsid,protease,tRNA	Lactococcus_phage(77.78%)	78	1758486:1758503	1821163:1821180
WP_012898196.1|1746507_1747545_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003130721.1|1747619_1747931_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SAD3	Streptococcus_phage	40.8	3.3e-08
WP_012898197.1|1748009_1749182_-	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA	NA
WP_038603585.1|1749304_1754254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038603587.1|1754290_1755046_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_012898200.1|1755083_1755842_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_012898201.1|1755879_1756671_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_003130736.1|1756699_1757545_-	WxL domain-containing protein	NA	NA	NA	NA	NA
WP_012898202.1|1757605_1757911_-	hypothetical protein	NA	NA	NA	NA	NA
1758486:1758503	attL	TTACTGACAGAAATTTTT	NA	NA	NA	NA
WP_012898203.1|1758517_1759135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003130743.1|1759346_1760660_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_012898205.1|1760809_1761988_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003130746.1|1761988_1763062_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_003130748.1|1763271_1764624_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_012898206.1|1764954_1765296_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_012898207.1|1765427_1766669_-	ammonium transporter	NA	NA	NA	NA	NA
WP_012898208.1|1766851_1768327_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	33.1	1.9e-26
WP_012898209.1|1768335_1769028_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.1	5.3e-35
WP_012898210.1|1769183_1769714_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003130760.1|1769844_1770090_-	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_012898212.1|1770793_1771156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144242123.1|1772445_1772697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080513135.1|1772800_1773010_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_017864806.1|1774133_1774559_-	universal stress protein	NA	NA	NA	NA	NA
WP_038603592.1|1775120_1775813_-	DUF3800 domain-containing protein	NA	NA	NA	NA	NA
WP_012897990.1|1775918_1776323_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	48.8	2.2e-28
WP_038603595.1|1776543_1777461_-	lysozyme	NA	Q8LTJ6	Lactococcus_phage	86.9	2.1e-140
WP_038603598.1|1778026_1778239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162472392.1|1780019_1781723_-	hypothetical protein	NA	Q9AZR8	Lactococcus_phage	87.3	2.6e-272
WP_144242124.1|1788256_1788835_-	hypothetical protein	NA	Q8LTK3	Lactococcus_phage	93.9	2.0e-59
WP_038603342.1|1788947_1789562_-|tail	tail protein	tail	Q9AZS2	Lactococcus_phage	87.0	6.1e-91
WP_038603606.1|1789993_1790494_-	hypothetical protein	NA	Q9AZS4	Lactococcus_phage	97.6	1.5e-84
WP_038603336.1|1790495_1790846_-|head	phage head closure protein	head	Q8LTK7	Lactococcus_phage	96.6	1.8e-55
WP_038603334.1|1790823_1791144_-|head,tail	phage gp6-like head-tail connector protein	head,tail	Q9AZS6	Lactococcus_phage	98.1	2.0e-53
WP_038603331.1|1791159_1792383_-|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	63.7	4.9e-140
WP_002819795.1|1792394_1793099_-|protease	Clp protease ClpP	protease	Q9AZS8	Lactococcus_phage	100.0	4.2e-120
WP_038603328.1|1794320_1794530_-	DUF1056 family protein	NA	Q94MB1	Lactococcus_phage	98.6	5.0e-29
WP_038603323.1|1796399_1796855_-|terminase	phage terminase small subunit P27 family	terminase	Q8LTL3	Lactococcus_phage	98.7	1.9e-81
WP_038603319.1|1797502_1797793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010905372.1|1798287_1798710_-	RinA family protein	NA	Q9AZM9	Lactococcus_phage	100.0	8.5e-52
WP_038603315.1|1798974_1799283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038603609.1|1799284_1799581_-	DUF1359 domain-containing protein	NA	Q9AZ70	Lactococcus_phage	60.2	3.2e-21
WP_158423215.1|1799973_1800111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029344328.1|1800382_1800568_-	hypothetical protein	NA	Q8LTR8	Lactococcus_phage	68.9	3.6e-15
WP_080716003.1|1800748_1800916_-	hypothetical protein	NA	A0A1P8BKX9	Lactococcus_phage	83.6	8.6e-24
WP_038603309.1|1800912_1801149_-	hypothetical protein	NA	A0A1W6JL28	Lactococcus_phage	74.4	6.9e-27
WP_158423212.1|1801148_1801322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038603307.1|1801318_1801549_-	hypothetical protein	NA	Q94M84	Lactococcus_phage	78.9	3.0e-27
WP_038603614.1|1802544_1802766_-	hypothetical protein	NA	A0A1P8BKY9	Lactococcus_phage	89.1	2.7e-25
WP_158423211.1|1802758_1802920_-	hypothetical protein	NA	Q9MCF7	Lactococcus_phage	96.2	2.8e-24
WP_038603294.1|1803845_1804133_-	hypothetical protein	NA	Q9AZU4	Lactococcus_phage	97.9	4.1e-50
WP_051880139.1|1804151_1804769_-	DUF1642 domain-containing protein	NA	A0A1P8BKG5	Lactococcus_phage	46.4	3.1e-26
WP_038603290.1|1804765_1804975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038603288.1|1805137_1805389_-	hypothetical protein	NA	A0A1P8BLV4	Lactococcus_phage	84.3	1.7e-31
WP_038603286.1|1805399_1805762_-	DUF658 family protein	NA	A0A1P8BLN7	Lactococcus_phage	96.7	3.4e-57
WP_038603616.1|1806009_1806429_-	RusA family crossover junction endodeoxyribonuclease	NA	A7DYE2	Streptococcus_phage	39.4	1.0e-17
WP_038603618.1|1806437_1806680_-	hypothetical protein	NA	A5GZ49	Lactococcus_phage	81.2	1.2e-34
WP_080716017.1|1806672_1807518_-	DnaD domain protein	NA	A5GZ47	Lactococcus_phage	61.4	6.1e-65
WP_038603621.1|1807762_1808563_-	DNA recombination protein RecT	NA	Q9AZQ0	Lactococcus_phage	60.9	1.1e-76
WP_017864659.1|1808555_1809392_-	hypothetical protein	NA	A0A1P8BKZ1	Lactococcus_phage	82.6	4.1e-106
WP_038603623.1|1809494_1809668_-	putative transcriptional regulator	NA	A0A1B1IMG1	Lactococcus_phage	96.5	4.0e-24
WP_038603625.1|1809698_1809935_-	DUF1408 domain-containing protein	NA	Q9MC36	Lactococcus_phage	97.4	3.9e-38
WP_038603627.1|1810038_1810539_+	hypothetical protein	NA	A0A182BQC2	Lactococcus_phage	56.3	2.0e-44
WP_038603630.1|1810516_1810765_-	hypothetical protein	NA	A0A182BQC3	Lactococcus_phage	77.8	6.8e-25
WP_003130869.1|1810917_1811256_-	hypothetical protein	NA	A0A1B1IMQ1	Lactococcus_phage	99.1	9.8e-59
WP_038603632.1|1811269_1812067_-	antirepressor	NA	Q38330	Lactococcus_phage	78.9	2.4e-111
WP_021468383.1|1812079_1812328_-	helix-turn-helix transcriptional regulator	NA	A0A097BYF3	Leuconostoc_phage	56.9	1.9e-11
WP_038603636.1|1812459_1812714_+	DUF2513 domain-containing protein	NA	NA	NA	NA	NA
WP_017865020.1|1812710_1812914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038603638.1|1813096_1813465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038603641.1|1813804_1814329_+	XRE family transcriptional regulator	NA	Q9AZW3	Lactococcus_phage	50.0	3.9e-30
WP_038603644.1|1814339_1814927_+	hypothetical protein	NA	Q9AZW4	Lactococcus_phage	85.0	2.4e-92
WP_038600379.1|1814962_1815244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051880141.1|1815299_1816166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038603918.1|1816295_1817435_+|integrase	site-specific integrase	integrase	A0A1B1IMP1	Lactococcus_phage	97.9	2.3e-208
WP_012898213.1|1817540_1818614_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.1	2.6e-60
WP_012898214.1|1818677_1819610_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	30.5	1.1e-22
WP_010906053.1|1819792_1821085_-	uracil-xanthine permease	NA	Q9KX94	Enterobacteria_phage	35.9	1.6e-61
1821163:1821180	attR	TTACTGACAGAAATTTTT	NA	NA	NA	NA
>prophage 9
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	1955967	1965825	2554693	tRNA	Prochlorococcus_phage(33.33%)	9	NA	NA
WP_003130886.1|1955967_1956729_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.5e-17
WP_003130885.1|1956894_1957704_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.5	7.0e-10
WP_003130884.1|1957737_1958631_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_003130883.1|1958630_1959554_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_012898307.1|1959674_1960526_-	phosphate ABC transporter substrate-binding protein	NA	E3SNT9	Prochlorococcus_phage	27.3	2.4e-05
WP_003130880.1|1960872_1961769_-	phosphate ABC transporter substrate-binding protein	NA	E3SM63	Prochlorococcus_phage	32.4	7.2e-08
WP_003130878.1|1962045_1962513_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	56.6	2.7e-43
WP_161934612.1|1962544_1963111_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_012898309.1|1963206_1965825_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	33.3	5.5e-64
>prophage 10
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	2070960	2085897	2554693	integrase	Lactococcus_phage(86.67%)	19	2068961:2068980	2081594:2081613
2068961:2068980	attL	TTATAATAAATCCAAGGCTT	NA	NA	NA	NA
WP_010906204.1|2070960_2071881_-	DUF4065 domain-containing protein	NA	Q9AZG0	Lactococcus_phage	99.7	1.6e-172
WP_010906205.1|2071892_2072189_-	hypothetical protein	NA	Q9AZG1	Lactococcus_phage	100.0	1.6e-49
WP_010906206.1|2072377_2072557_-	hypothetical protein	NA	Q9AZG2	Lactococcus_phage	100.0	9.2e-24
WP_012898378.1|2072748_2072979_-	hypothetical protein	NA	A0A1P8BME4	Lactococcus_phage	93.4	4.6e-36
WP_012898379.1|2073121_2073628_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	99.4	5.5e-90
WP_021722667.1|2074255_2074504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012898382.1|2074500_2074857_-	phage protein	NA	NA	NA	NA	NA
WP_012898383.1|2075015_2075222_-	hypothetical protein	NA	Q9AZG9	Lactococcus_phage	95.6	2.4e-31
WP_012898385.1|2075782_2077480_-	hypothetical protein	NA	Q9AZH2	Lactococcus_phage	96.4	4.1e-246
WP_012898386.1|2077489_2077759_-	hypothetical protein	NA	Q9AZH3	Lactococcus_phage	97.8	1.1e-39
WP_012898387.1|2077904_2078159_-	hypothetical protein	NA	Q9AZH5	Lactococcus_phage	89.1	2.9e-15
WP_012898388.1|2078160_2078331_-	DUF1655 domain-containing protein	NA	Q9AZH6	Lactococcus_phage	96.4	1.8e-24
WP_012898389.1|2078395_2079088_-	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	97.3	7.5e-114
WP_012898390.1|2079182_2079377_-	hypothetical protein	NA	R9QNG3	Lactococcus_phage	43.5	2.1e-05
WP_012898391.1|2079534_2080221_+	helix-turn-helix transcriptional regulator	NA	O34051	Streptococcus_phage	40.3	1.4e-06
WP_012898392.1|2080295_2081495_+|integrase	site-specific integrase	integrase	Q9AZI0	Lactococcus_phage	77.7	2.2e-177
WP_012898393.1|2081641_2082085_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
2081594:2081613	attR	TTATAATAAATCCAAGGCTT	NA	NA	NA	NA
WP_012898394.1|2082162_2082744_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_012898395.1|2083074_2085897_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.9	1.4e-304
>prophage 11
NZ_CP009054	Lactococcus lactis subsp. lactis NCDO 2118 chromosome, complete genome	2554693	2465377	2474844	2554693		Lactococcus_phage(90.0%)	14	NA	NA
WP_012898673.1|2465377_2465572_-	hypothetical protein	NA	Q9AZK1	Lactococcus_phage	93.8	4.3e-27
WP_012898674.1|2465919_2466246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012898676.1|2467130_2467499_-	phage protein	NA	NA	NA	NA	NA
WP_012898677.1|2467739_2468351_-	helix-turn-helix transcriptional regulator	NA	J9QD19	Clostridium_phage	42.4	4.6e-06
WP_012898678.1|2468482_2468662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012898679.1|2468831_2469524_+	Bro-N domain-containing protein	NA	NA	NA	NA	NA
WP_012898680.1|2469598_2469793_+	DUF1655 domain-containing protein	NA	Q9AZJ4	Lactococcus_phage	93.8	1.6e-26
WP_012898681.1|2469796_2470321_+	hypothetical protein	NA	Q9AZJ3	Lactococcus_phage	75.9	6.8e-67
WP_012898682.1|2470317_2470599_+	hypothetical protein	NA	Q9AZJ1	Lactococcus_phage	94.6	1.1e-44
WP_012898683.1|2470641_2470881_+	hypothetical protein	NA	Q9AZJ0	Lactococcus_phage	93.7	2.0e-37
WP_012898685.1|2471130_2471325_+	hypothetical protein	NA	Q9AZE8	Lactococcus_phage	98.4	3.9e-28
WP_012898686.1|2471311_2471641_+	hypothetical protein	NA	Q9AZI7	Lactococcus_phage	91.7	3.5e-53
WP_012898688.1|2472450_2474079_+	DNA primase	NA	Q9AZI5	Lactococcus_phage	94.1	7.8e-303
WP_012898689.1|2474304_2474844_+	hypothetical protein	NA	Q9AZI4	Lactococcus_phage	62.5	4.6e-50
