assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000486165.2_ASM48616v2	NZ_CP017727	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 strain SGSC 2206 chromosome, complete genome	1	89908-90002	1	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	1	1	89934-89976	NZ_CP017727.1_89988-90030	NA	1	1	Unclear	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA|31aa|up_5|NZ_CP017727.1_84984_85077_+,NA|160aa|up_4|NZ_CP017727.1_85277_85757_+,NA|38aa|up_2|NZ_CP017727.1_87284_87398_+,NA|155aa|up_0|NZ_CP017727.1_88318_88783_+,NA|115aa|down_3|NZ_CP017727.1_97216_97561_+	NA|310aa|up_9|NZ_CP017727.1_78938_79868_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP017727.1_79910_80813_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP017727.1_81321_82017_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP017727.1_82236_84963_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP017727.1_84984_85077_+	NA	NA|160aa|up_4|NZ_CP017727.1_85277_85757_+	NA	NA|227aa|up_3|NZ_CP017727.1_85985_86666_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP017727.1_87284_87398_+	NA	NA|286aa|up_1|NZ_CP017727.1_87450_88308_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP017727.1_88318_88783_+	NA	NA|206aa|down_0|NZ_CP017727.1_91819_92437_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|343aa|down_1|NZ_CP017727.1_93961_94990_-	COG3943, COG3943, Virulence protein [General function prediction only]	NA|199aa|down_2|NZ_CP017727.1_96060_96657_-	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein	NA|115aa|down_3|NZ_CP017727.1_97216_97561_+	NA	NA|461aa|down_4|NZ_CP017727.1_98260_99643_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_5|NZ_CP017727.1_99654_101973_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_6|NZ_CP017727.1_102075_103785_-	pfam05170, AsmA, AsmA family	NA|464aa|down_7|NZ_CP017727.1_103905_105297_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_8|NZ_CP017727.1_105524_106730_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	cas3|694aa|down_9|NZ_CP017727.1_106765_108847_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional
GCF_000486165.2_ASM48616v2	NZ_CP017727	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 strain SGSC 2206 chromosome, complete genome	2	588418-588518	2	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA,NA	NA|448aa|up_9|NZ_CP017727.1_574495_575839_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP017727.1_576466_576919_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP017727.1_576946_578449_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP017727.1_578473_581152_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP017727.1_581373_581775_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP017727.1_581774_582719_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP017727.1_582869_583139_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP017727.1_583380_585516_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP017727.1_585625_586510_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP017727.1_586615_586696_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP017727.1_588731_589976_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|329aa|down_1|NZ_CP017727.1_590222_591209_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|336aa|down_2|NZ_CP017727.1_591277_592285_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_3|NZ_CP017727.1_592462_593359_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_4|NZ_CP017727.1_593349_594345_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_5|NZ_CP017727.1_594561_595086_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_6|NZ_CP017727.1_595079_595583_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_7|NZ_CP017727.1_595569_595887_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_8|NZ_CP017727.1_595924_596368_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_9|NZ_CP017727.1_596347_596866_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus
GCF_000486165.2_ASM48616v2	NZ_CP017727	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 strain SGSC 2206 chromosome, complete genome	3	614411-614652	1	PILER-CR	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Orphan	TTTTACAGGGCGACAGGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	53	1	1	614464-614523	NZ_CP017727.1_614872-614931	NA	2	2	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA,NA|55aa|down_8|NZ_CP017727.1_627229_627394_-	NA|348aa|up_9|NZ_CP017727.1_603259_604303_-	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase	NA|458aa|up_8|NZ_CP017727.1_604346_605720_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|95aa|up_7|NZ_CP017727.1_605723_606008_-	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|155aa|up_6|NZ_CP017727.1_606038_606503_-	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|424aa|up_5|NZ_CP017727.1_606517_607789_-	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|285aa|up_4|NZ_CP017727.1_607908_608763_-	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|524aa|up_3|NZ_CP017727.1_609020_610592_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|NZ_CP017727.1_611122_611893_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP017727.1_611918_612809_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP017727.1_612906_614052_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|NZ_CP017727.1_615719_616658_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|NZ_CP017727.1_616755_617745_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|NZ_CP017727.1_617765_619097_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|NZ_CP017727.1_619163_620372_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_4|NZ_CP017727.1_620405_622700_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_5|NZ_CP017727.1_622769_624134_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|NZ_CP017727.1_624449_625781_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|NZ_CP017727.1_625806_627117_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|NZ_CP017727.1_627229_627394_-	NA	NA|234aa|down_9|NZ_CP017727.1_627417_628119_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCF_000486165.2_ASM48616v2	NZ_CP017727	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 strain SGSC 2206 chromosome, complete genome	4	944744-946114	2,3,1,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	20,22,22,20	22	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA,NA	NA|179aa|up_9|NZ_CP017727.1_933291_933828_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP017727.1_933824_934295_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP017727.1_934309_934816_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP017727.1_934835_935609_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP017727.1_935621_938321_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP017727.1_938400_938988_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP017727.1_939593_940394_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP017727.1_940621_942259_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP017727.1_942341_943640_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP017727.1_943775_944447_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP017727.1_946211_947009_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP017727.1_947095_947458_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP017727.1_947881_949681_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP017727.1_949680_951393_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP017727.1_951494_952229_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP017727.1_952441_953395_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP017727.1_953778_956478_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP017727.1_956835_958371_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP017727.1_958387_958990_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP017727.1_959012_960071_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_000486165.2_ASM48616v2	NZ_CP017727	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 strain SGSC 2206 chromosome, complete genome	5	962808-965337	4,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	40,41,41	41	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,c2c9_V-U4,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP017727.1_951494_952229_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP017727.1_952441_953395_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP017727.1_953778_956478_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP017727.1_956835_958371_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP017727.1_958387_958990_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP017727.1_959012_960071_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP017727.1_960080_960806_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP017727.1_960805_961510_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP017727.1_961509_962427_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP017727.1_962429_962723_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP017727.1_965351_966398_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP017727.1_966649_967558_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP017727.1_967567_969007_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP017727.1_968993_969599_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP017727.1_969616_969973_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP017727.1_970163_970475_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP017727.1_970493_971204_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP017727.1_971203_971683_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP017727.1_971679_972729_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP017727.1_972709_973471_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
