assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000486725.2_ASM48672v2	NZ_CP019185	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 11511 chromosome, complete genome	1	572086-572186	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|448aa|up_9|NZ_CP019185.1_558164_559508_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP019185.1_560135_560588_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP019185.1_560615_562118_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP019185.1_562142_564821_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP019185.1_565041_565443_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP019185.1_565442_566387_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP019185.1_566537_566807_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP019185.1_567048_569184_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP019185.1_569293_570178_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP019185.1_570283_570364_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP019185.1_572399_573644_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|299aa|down_1|NZ_CP019185.1_574918_575815_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_2|NZ_CP019185.1_575805_576801_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_3|NZ_CP019185.1_577017_577542_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_4|NZ_CP019185.1_577535_578039_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_5|NZ_CP019185.1_578025_578343_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_6|NZ_CP019185.1_578380_578824_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_7|NZ_CP019185.1_578803_579322_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_8|NZ_CP019185.1_579452_580088_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|192aa|down_9|NZ_CP019185.1_580154_580730_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP
GCF_000486725.2_ASM48672v2	NZ_CP019185	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 11511 chromosome, complete genome	2	920042-920253	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCGG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	2,3,3	3	TypeI-E	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|179aa|up_9|NZ_CP019185.1_908586_909123_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP019185.1_909119_909590_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP019185.1_909604_910111_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP019185.1_910130_910904_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP019185.1_910916_913616_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP019185.1_913695_914283_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP019185.1_914891_915692_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP019185.1_915919_917557_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP019185.1_917639_918938_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP019185.1_919073_919745_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|121aa|down_0|NZ_CP019185.1_921234_921597_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_1|NZ_CP019185.1_922032_923832_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_2|NZ_CP019185.1_923831_925544_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_3|NZ_CP019185.1_925619_926354_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_4|NZ_CP019185.1_926441_927395_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_5|NZ_CP019185.1_927774_930474_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|201aa|down_6|NZ_CP019185.1_932383_932986_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_7|NZ_CP019185.1_933008_934067_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|down_8|NZ_CP019185.1_934076_934802_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|down_9|NZ_CP019185.1_934801_935506_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e
GCF_000486725.2_ASM48672v2	NZ_CP019185	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 11511 chromosome, complete genome	3	936804-937259	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	TypeI-E	cas3,PD-DExK,WYL,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP019185.1_923831_925544_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP019185.1_925619_926354_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_7|NZ_CP019185.1_926441_927395_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_6|NZ_CP019185.1_927774_930474_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cse2gr11|201aa|up_5|NZ_CP019185.1_932383_932986_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP019185.1_933008_934067_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP019185.1_934076_934802_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP019185.1_934801_935506_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|297aa|up_1|NZ_CP019185.1_935505_936396_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP019185.1_936425_936719_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|303aa|down_0|NZ_CP019185.1_938570_939479_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_1|NZ_CP019185.1_939488_940928_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_2|NZ_CP019185.1_940914_941520_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_3|NZ_CP019185.1_941537_941894_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_4|NZ_CP019185.1_942084_942396_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|NZ_CP019185.1_942414_943125_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|NZ_CP019185.1_943124_943604_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|NZ_CP019185.1_943600_944650_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|NZ_CP019185.1_944630_945392_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|NZ_CP019185.1_945385_946012_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
