assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000486915.2_ASM48691v2	NZ_CP019183	Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958 chromosome, complete genome	1	598892-598992	1	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|448aa|up_9|NZ_CP019183.1_585039_586383_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP019183.1_587010_587463_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP019183.1_587490_588993_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP019183.1_589017_591696_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP019183.1_591847_592249_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP019183.1_592248_593193_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP019183.1_593343_593613_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP019183.1_593854_595990_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP019183.1_596099_596984_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP019183.1_597089_597170_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP019183.1_599206_600451_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|down_1|NZ_CP019183.1_600541_601549_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_2|NZ_CP019183.1_601726_602623_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_3|NZ_CP019183.1_602613_603609_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_4|NZ_CP019183.1_603825_604350_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_5|NZ_CP019183.1_604343_604847_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_6|NZ_CP019183.1_604833_605151_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_7|NZ_CP019183.1_605188_605632_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_8|NZ_CP019183.1_605611_606130_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_9|NZ_CP019183.1_606260_606896_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCF_000486915.2_ASM48691v2	NZ_CP019183	Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958 chromosome, complete genome	2	623839-624124	1	PILER-CR	no		cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Orphan	CTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTCTTCATAAAACCCG	54	0	0	NA	NA	NA	2	2	Orphan	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA|55aa|down_8|NZ_CP019183.1_636333_636498_-	NA|348aa|up_9|NZ_CP019183.1_612570_613614_-	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase	NA|458aa|up_8|NZ_CP019183.1_613657_615031_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|95aa|up_7|NZ_CP019183.1_615034_615319_-	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|155aa|up_6|NZ_CP019183.1_615349_615814_-	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|424aa|up_5|NZ_CP019183.1_615828_617100_-	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|285aa|up_4|NZ_CP019183.1_617219_618074_-	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|524aa|up_3|NZ_CP019183.1_618331_619903_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|NZ_CP019183.1_620433_621204_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP019183.1_621229_622120_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP019183.1_622217_623363_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|NZ_CP019183.1_624823_625762_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|NZ_CP019183.1_625859_626849_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|NZ_CP019183.1_626869_628201_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|NZ_CP019183.1_628267_629476_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_4|NZ_CP019183.1_629509_631804_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_5|NZ_CP019183.1_631873_633238_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|NZ_CP019183.1_633553_634885_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|NZ_CP019183.1_634910_636221_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|NZ_CP019183.1_636333_636498_-	NA	NA|234aa|down_9|NZ_CP019183.1_636521_637223_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCF_000486915.2_ASM48691v2	NZ_CP019183	Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958 chromosome, complete genome	3	1007510-1008524	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	15,16,16	16	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|179aa|up_9|NZ_CP019183.1_996054_996591_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP019183.1_996587_997058_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP019183.1_997072_997579_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP019183.1_997598_998372_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP019183.1_998384_1001084_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP019183.1_1001163_1001751_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP019183.1_1002359_1003160_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP019183.1_1003387_1005025_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP019183.1_1005107_1006406_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP019183.1_1006541_1007213_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP019183.1_1008621_1009419_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP019183.1_1009506_1009869_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP019183.1_1010292_1012092_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP019183.1_1012091_1013804_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP019183.1_1013879_1014614_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP019183.1_1014826_1015780_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP019183.1_1016163_1018863_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP019183.1_1019220_1020756_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP019183.1_1020772_1021375_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP019183.1_1021397_1022456_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_000486915.2_ASM48691v2	NZ_CP019183	Salmonella enterica subsp. enterica serovar Mbandaka str. ATCC 51958 chromosome, complete genome	4	1025193-1032786	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	29,29,28	1	1	1027114-1027145	NZ_CP019183.1_948597-948566	I-E:I-E:I-E	124,124,64	124	TypeI-E	cas3,PD-DExK,DEDDh,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	NA,NA	NA|245aa|up_9|NZ_CP019183.1_1013879_1014614_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP019183.1_1014826_1015780_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP019183.1_1016163_1018863_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP019183.1_1019220_1020756_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP019183.1_1020772_1021375_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP019183.1_1021397_1022456_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP019183.1_1022465_1023191_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP019183.1_1023190_1023895_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP019183.1_1023894_1024812_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP019183.1_1024814_1025108_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP019183.1_1032800_1033847_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP019183.1_1034097_1035006_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP019183.1_1035015_1036455_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP019183.1_1036441_1037047_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP019183.1_1037064_1037421_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP019183.1_1037611_1037923_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP019183.1_1037941_1038652_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP019183.1_1038651_1039131_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP019183.1_1039127_1040177_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP019183.1_1040157_1040919_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
