The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007533	Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080 chromosome, complete genome	4603849	586412	631897	4603849	integrase,lysis,tRNA,head,tail	Salmonella_phage(50.0%)	64	574496:574511	640153:640168
574496:574511	attL	TTATTTCCGGCGCTGG	NA	NA	NA	NA
WP_000117867.1|586412_587813_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
WP_001528805.1|587981_589184_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023222253.1|589378_590671_-|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.8	2.2e-252
WP_000065276.1|590715_590964_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|591004_591244_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_077915474.1|591286_592444_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	99.7	6.1e-217
WP_023257607.1|592406_595334_-	gifsy-1 prophage RecE	NA	H6WRX1	Salmonella_phage	97.1	0.0e+00
WP_023195475.1|595460_595811_-	hypothetical protein	NA	S4TSN6	Salmonella_phage	94.8	2.0e-59
WP_000917562.1|595832_595991_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
WP_000373338.1|596388_596595_+	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	67.6	1.6e-16
WP_000091280.1|596621_597056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000439725.1|597057_597483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001230956.1|597525_597921_-	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	72.5	3.5e-47
WP_000992434.1|598025_598262_+	Rha family transcriptional regulator	NA	A0A0M4QX15	Salmonella_phage	73.1	9.0e-27
WP_001574095.1|598227_598602_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	99.2	3.9e-64
WP_023257585.1|598686_599670_+	hypothetical protein	NA	H6WRX7	Salmonella_phage	96.1	1.1e-155
WP_000790508.1|599672_600422_+	ATP-binding protein	NA	H6WRX8	Salmonella_phage	92.8	2.3e-132
WP_023257586.1|600432_600780_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	99.1	2.2e-58
WP_000065089.1|600776_601097_+	hypothetical protein	NA	H6WRY0	Salmonella_phage	65.5	6.7e-25
WP_000974174.1|601096_601342_+	hypothetical protein	NA	Q5G8U9	Enterobacteria_phage	88.9	3.0e-33
WP_023257587.1|601652_602867_+	hypothetical protein	NA	J9Q803	Salmonella_phage	53.3	3.0e-118
WP_071825187.1|602850_602919_+	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_023257588.1|603012_603339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217669.1|603586_603820_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_031607489.1|603936_604185_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	98.8	1.0e-41
WP_000929790.1|604219_604822_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.5	7.5e-110
WP_001241022.1|604821_605028_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	98.5	4.6e-35
WP_023257589.1|605030_605672_+	NinG-like phage protein	NA	S4TSR3	Salmonella_phage	98.1	7.0e-114
WP_000801757.1|605668_605809_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_038389866.1|605805_606483_+	antiterminator	NA	I6PDF8	Cronobacter_phage	53.6	2.9e-62
WP_000211410.1|606755_607319_+	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
WP_020898615.1|607825_608014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001526513.1|608216_608519_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_020898616.1|608496_608985_+	lysozyme	NA	M9P0E5	Enterobacteria_phage	67.5	2.3e-56
WP_133308164.1|609005_609446_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	77.3	1.0e-52
WP_001113128.1|609671_609854_+	DUF826 domain-containing protein	NA	NA	NA	NA	NA
WP_001668530.1|609883_610126_+	DUF2514 family protein	NA	NA	NA	NA	NA
WP_000877749.1|610151_610712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023257591.1|610799_611429_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	98.6	2.5e-108
WP_023257592.1|611431_613051_+	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	81.6	1.7e-262
WP_023257593.1|613050_614571_+	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	43.7	4.8e-105
WP_023257594.1|614611_615301_+|head	phage head morphogenesis protein	head	A0A077KGU5	Edwardsiella_phage	46.7	2.0e-50
WP_023257595.1|615297_616644_+	DUF2213 domain-containing protein	NA	A0A219YCD3	Aeromonas_phage	36.5	5.5e-68
WP_023257596.1|616645_617128_+	hypothetical protein	NA	K4HYQ5	Acinetobacter_phage	48.8	8.3e-27
WP_001031913.1|617127_618156_+	hypothetical protein	NA	A0A219YBB0	Aeromonas_phage	48.7	2.3e-82
WP_023209779.1|618159_618507_+	hypothetical protein	NA	H9C0V9	Aeromonas_phage	38.1	1.5e-09
WP_001748492.1|618513_618969_+	DUF4054 domain-containing protein	NA	A0A068CGG9	Acinetobacter_phage	40.8	2.4e-15
WP_023257597.1|618962_619547_+	hypothetical protein	NA	H9C0W2	Aeromonas_phage	30.1	2.1e-16
WP_001048637.1|619543_619909_+	hypothetical protein	NA	A0A077KAW7	Edwardsiella_phage	40.5	3.0e-21
WP_023257598.1|619893_620439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023257599.1|620419_621904_+	DUF3383 domain-containing protein	NA	A0A077KGV4	Edwardsiella_phage	41.2	1.8e-96
WP_000016414.1|621904_622351_+	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	40.4	4.8e-21
WP_023257600.1|622350_622755_+	hypothetical protein	NA	H9C0W7	Aeromonas_phage	44.8	1.8e-19
WP_000228831.1|622796_622979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023257601.1|622962_625134_+	transglycosylase SLT domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	67.1	1.4e-49
WP_023257602.1|625130_625841_+	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	34.4	1.4e-27
WP_000890115.1|625840_626143_+	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	49.5	7.0e-24
WP_000122818.1|626139_627009_+	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	32.7	9.1e-32
WP_023257603.1|626989_627667_+	hypothetical protein	NA	A0A077KAY0	Edwardsiella_phage	36.4	5.4e-32
WP_023257604.1|627679_628036_+	hypothetical protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	9.5e-20
WP_023257605.1|628032_629274_+	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	49.9	1.2e-101
WP_001181748.1|629275_629878_+	DUF2612 domain-containing protein	NA	A0A2R3UAM9	Myoviridae_environmental_samples	38.9	4.3e-33
WP_038389870.1|629867_631322_+|tail	tail fiber protein	tail	E5G6P0	Salmonella_phage	68.2	2.0e-39
WP_038389872.1|631321_631897_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	84.3	5.0e-87
640153:640168	attR	TTATTTCCGGCGCTGG	NA	NA	NA	NA
>prophage 2
NZ_CP007533	Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080 chromosome, complete genome	4603849	821345	829625	4603849		Escherichia_phage(42.86%)	9	NA	NA
WP_000444506.1|821345_822596_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	2.0e-19
WP_000917280.1|823041_824166_+	type III secretion system effector SopF	NA	NA	NA	NA	NA
WP_000275700.1|825212_825626_+	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	4.2e-19
WP_000733630.1|825642_826371_+	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.5	1.6e-61
WP_000158843.1|826563_827106_+	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001277616.1|827253_827631_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_001529135.1|827703_828513_-	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001036548.1|829010_829175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000497451.1|829385_829625_-	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
>prophage 3
NZ_CP007533	Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080 chromosome, complete genome	4603849	1298190	1304852	4603849		Salmonella_phage(33.33%)	9	NA	NA
WP_077905325.1|1298190_1298505_-	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	86.1	4.3e-40
WP_000727928.1|1298883_1299309_-	peptidase	NA	NA	NA	NA	NA
WP_001605118.1|1299235_1299535_-	putative pertussis-like toxin subunit	NA	A0A0U2KD26	Escherichia_phage	54.3	3.2e-13
WP_071825182.1|1299573_1299714_-	pertussis toxin subunit	NA	A0A0U2KD26	Escherichia_phage	74.3	3.2e-08
WP_001096568.1|1299963_1300146_-	hypothetical protein	NA	S4TSR3	Salmonella_phage	77.6	1.0e-22
WP_023212458.1|1300616_1301339_+	hypothetical protein	NA	A0A0P0ZCT1	Stx2-converting_phage	39.3	1.1e-35
WP_001146150.1|1302161_1303052_+	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
WP_001128869.1|1303051_1304044_+	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA	NA
WP_000230462.1|1304045_1304852_+	peptide ABC transporter ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	27.4	4.6e-14
>prophage 4
NZ_CP007533	Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080 chromosome, complete genome	4603849	1478889	1484817	4603849	tail	Salmonella_phage(66.67%)	7	NA	NA
WP_023258059.1|1478889_1479474_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	83.2	3.6e-85
WP_001529204.1|1479463_1479784_-	hypothetical protein	NA	A0A0M4QWS3	Salmonella_phage	79.2	2.9e-44
WP_023258060.1|1479755_1481093_-|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	52.1	9.9e-78
WP_038389902.1|1482438_1482588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001529209.1|1482862_1483396_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
WP_001014089.1|1483392_1483680_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	95.1	1.9e-39
WP_001530910.1|1483710_1484817_+	exodeoxyribonuclease 8 (exodeoxyribonuclease viii)	NA	Q9QF34	Lambdoid_phage	66.7	3.3e-55
>prophage 5
NZ_CP007533	Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080 chromosome, complete genome	4603849	1590941	1598195	4603849		Morganella_phage(33.33%)	8	NA	NA
WP_001157312.1|1590941_1592372_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.5	3.5e-105
WP_000377042.1|1592445_1593141_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107430.1|1593232_1593532_-	membrane protein	NA	NA	NA	NA	NA
WP_023231006.1|1594181_1595378_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.6	3.3e-109
WP_024131109.1|1595638_1595827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|1595837_1596050_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457657.1|1596504_1597773_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.9	2.4e-227
WP_000394197.1|1597775_1598195_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 6
NZ_CP007533	Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080 chromosome, complete genome	4603849	1692369	1702876	4603849		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|1692369_1693683_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565904.1|1693709_1694789_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	2.3e-16
WP_000648783.1|1694793_1695567_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018225.1|1695582_1696557_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973712.1|1696562_1697114_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.9e-52
WP_024132299.1|1697114_1697993_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.2	3.5e-108
WP_001023663.1|1698040_1698940_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_000697850.1|1698939_1700025_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	9.4e-103
WP_000981469.1|1700401_1701295_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111835.1|1701472_1702876_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
>prophage 7
NZ_CP007533	Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080 chromosome, complete genome	4603849	1770105	1779277	4603849	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195345.1|1770105_1772139_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703136.1|1772380_1772839_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
WP_001221798.1|1773010_1773541_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|1773597_1774065_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|1774111_1774831_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|1774827_1776513_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240418.1|1776735_1777467_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|1777526_1777634_+	protein YohO	NA	NA	NA	NA	NA
WP_000824858.1|1777614_1778346_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|1778329_1779277_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 8
NZ_CP007533	Salmonella enterica subsp. enterica serovar Bredeney str. CFSAN001080 chromosome, complete genome	4603849	2309657	2316412	4603849	capsid	Enterobacteria_phage(83.33%)	10	NA	NA
WP_023251664.1|2309657_2310224_-	Polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	64.3	1.1e-59
WP_000468229.1|2310239_2310479_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	61.7	1.7e-20
WP_162149664.1|2310482_2311292_-|capsid	capsid protein	capsid	NA	NA	NA	NA
WP_162149667.1|2311533_2311662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000546674.1|2311766_2312033_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	71.6	2.6e-30
WP_023251666.1|2312029_2312581_+	ash family protein	NA	Q7M2A7	Enterobacteria_phage	73.1	1.9e-35
WP_001216599.1|2312577_2312805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023251667.1|2312801_2313122_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_023251668.1|2313136_2315470_+	P4-specific DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.9	0.0e+00
WP_001592532.1|2315911_2316412_+	hypothetical protein	NA	A0A2H4J2P5	uncultured_Caudovirales_phage	61.3	8.9e-40
