The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NC_022653	Bacillus amyloliquefaciens CC178, complete sequence	3916828	658093	667983	3916828		Synechococcus_phage(50.0%)	9	NA	NA
WP_007408896.1|658093_659386_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	27.3	4.5e-19
WP_012116996.1|659461_660181_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3G7P8	Synechococcus_phage	44.7	5.7e-48
WP_003155758.1|660180_660435_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	M4QPE7	Synechococcus_phage	33.3	4.7e-05
WP_007408898.1|660431_661115_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_012116997.1|661098_663327_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.7	2.5e-158
WP_007408900.1|663302_664733_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.7	6.2e-54
WP_012116998.1|664823_665864_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	41.4	4.8e-64
WP_012116999.1|665860_666448_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.8	1.0e-26
WP_012117000.1|666444_667983_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	50.8	8.7e-78
>prophage 2
NC_022653	Bacillus amyloliquefaciens CC178, complete sequence	3916828	1211259	1223354	3916828	holin	uncultured_Caudovirales_phage(42.86%)	19	NA	NA
WP_087920760.1|1211259_1212396_+	tetratricopeptide repeat protein	NA	A0A1P8CWN8	Bacillus_phage	47.9	1.3e-94
WP_012117358.1|1212385_1212520_+	PhrA family phosphatase inhibitor	NA	NA	NA	NA	NA
WP_003154880.1|1212662_1213616_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A218KC88	Bacillus_phage	69.3	1.1e-62
WP_007610770.1|1213653_1214031_-	PH domain-containing protein	NA	A5GYQ0	Lactococcus_phage	41.4	1.5e-15
WP_012117359.1|1214141_1214747_+	poly-gamma-glutamate hydrolase family protein	NA	A0A0Y0AJU6	Bacillus_phage	47.3	8.8e-42
WP_007610775.1|1214865_1215456_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	51.7	3.0e-39
WP_003154871.1|1215604_1215943_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J6F9	uncultured_Caudovirales_phage	45.8	8.4e-18
WP_007407285.1|1216133_1216313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012117361.1|1217030_1217831_+	ATP-binding protein	NA	A6XMI1	Bacillus_virus	45.5	1.0e-58
WP_007407281.1|1218095_1218437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007407280.1|1218426_1218630_+	hypothetical protein	NA	A0A2H4J4M6	uncultured_Caudovirales_phage	50.0	1.9e-12
WP_012117362.1|1218743_1219256_+	sigma-70 family RNA polymerase sigma factor	NA	A0A0K2CNQ1	Brevibacillus_phage	44.6	2.9e-22
WP_077411063.1|1219998_1220466_+	hypothetical protein	NA	A0A1P8CWR7	Bacillus_phage	47.1	2.6e-33
WP_012117365.1|1220478_1220850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012117366.1|1220854_1221052_+	XkdX family protein	NA	A0A2H4JAA1	uncultured_Caudovirales_phage	63.6	2.5e-14
WP_012117367.1|1221108_1221870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003154815.1|1221921_1222185_+	protein xhlA	NA	A0A2H4JD40	uncultured_Caudovirales_phage	63.1	8.8e-23
WP_003154813.1|1222198_1222462_+|holin	phage holin	holin	A0A2H4J6M0	uncultured_Caudovirales_phage	65.5	2.3e-23
WP_007407257.1|1222475_1223354_+	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXD7	Bacillus_phage	60.5	3.7e-81
>prophage 3
NC_022653	Bacillus amyloliquefaciens CC178, complete sequence	3916828	1777374	1783588	3916828		Bacillus_phage(50.0%)	7	NA	NA
WP_003154061.1|1777374_1777767_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	G3MBF1	Bacillus_virus	59.1	3.8e-30
WP_007611605.1|1777726_1779829_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	U5PY35	Bacillus_phage	85.7	0.0e+00
WP_012117608.1|1779846_1780836_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	F8WQ21	Bacillus_phage	83.0	1.1e-155
WP_012117609.1|1780884_1781505_+	hypothetical protein	NA	A0A127AYS1	Bacillus_phage	47.9	2.1e-46
WP_012117610.1|1781554_1782313_-	N-acetylmuramoyl-L-alanine amidase	NA	E5DV68	Deep-sea_thermophilic_phage	50.4	4.8e-53
WP_007410369.1|1782346_1782571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015417523.1|1782619_1783588_+	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	40.9	8.0e-53
>prophage 4
NC_022653	Bacillus amyloliquefaciens CC178, complete sequence	3916828	2226869	2233123	3916828		Staphylococcus_phage(66.67%)	9	NA	NA
WP_007409428.1|2226869_2227463_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	36.6	2.6e-14
WP_007409427.1|2227452_2228208_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.7	2.9e-10
WP_003153376.1|2228415_2228505_+	YjcZ family sporulation protein	NA	NA	NA	NA	NA
WP_012117889.1|2228593_2229115_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_003153373.1|2229180_2229555_-	GNAT family N-acetyltransferase RibT	NA	NA	NA	NA	NA
WP_003153372.1|2229671_2230136_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	59.3	1.2e-43
WP_003153371.1|2230168_2231365_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	54.9	2.1e-116
WP_012117890.1|2231379_2232027_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	43.8	7.4e-39
WP_012117891.1|2232007_2233123_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	36.6	2.6e-55
>prophage 5
NC_022653	Bacillus amyloliquefaciens CC178, complete sequence	3916828	3607339	3658680	3916828	transposase,coat,holin	Bacillus_phage(36.36%)	56	NA	NA
WP_012118714.1|3607339_3608275_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	28.5	8.3e-23
WP_012118715.1|3608276_3608975_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.4	9.2e-35
WP_012118718.1|3610053_3610758_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_025285446.1|3610822_3611749_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	45.9	1.1e-43
WP_015240798.1|3612097_3612553_-	protein SpsL	NA	NA	NA	NA	NA
WP_012118721.1|3612549_3613398_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	37.3	3.1e-37
WP_007407684.1|3613418_3614366_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	42.9	5.9e-69
WP_012118722.1|3614368_3615106_-	NTP transferase domain-containing protein	NA	G3MA50	Bacillus_virus	42.3	6.5e-47
WP_012118723.1|3615133_3616138_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_012118724.1|3616139_3616883_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_012118725.1|3616872_3617994_-|coat	spore coat protein	coat	NA	NA	NA	NA
WP_012118726.1|3617993_3618857_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012118727.1|3618857_3620027_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_012118728.1|3620049_3621474_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_003150972.1|3621478_3622249_-	glycosyltransferase family 2 protein	NA	A0A0F7L2F7	uncultured_marine_virus	26.3	4.4e-06
WP_007407693.1|3622529_3623081_+|coat	spore coat protein GerQ	coat	NA	NA	NA	NA
WP_012118729.1|3623127_3623499_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_012118730.1|3623562_3624882_-	purine permease	NA	NA	NA	NA	NA
WP_015387535.1|3624900_3625323_-	YwdI family protein	NA	NA	NA	NA	NA
WP_012118732.1|3625382_3626066_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	44.7	3.2e-48
WP_012118733.1|3626080_3626887_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_012118734.1|3626971_3627499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023357186.1|3627543_3628179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003150960.1|3628171_3628510_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003150959.1|3628659_3629472_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_007407702.1|3629503_3629743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012118736.1|3629842_3631282_-	sucrose-6-phosphate hydrolase	NA	F8WPR5	Bacillus_phage	25.3	7.0e-21
WP_007614557.1|3631278_3632661_-	PTS sucrose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_012118737.1|3632881_3633712_-	transcription antiterminator	NA	NA	NA	NA	NA
WP_012118738.1|3633735_3634050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012118739.1|3634575_3636987_+	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	36.8	3.8e-19
WP_012118740.1|3637028_3638030_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_123912818.1|3638269_3639419_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	61.2	2.3e-38
WP_007407708.1|3639481_3640231_-	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA	NA
WP_007614568.1|3640333_3641521_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_012118742.1|3641722_3642181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003150937.1|3642473_3642734_+	spore morphogenesis/germination protein YwcE	NA	NA	NA	NA	NA
WP_007407711.1|3642777_3643146_-	cytochrome aa3 quinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003150930.1|3643147_3643762_-	cytochrome aa3 quinol oxidase subunit III	NA	NA	NA	NA	NA
WP_012118743.1|3643776_3645726_-	cytochrome aa3 quinol oxidase subunit I	NA	NA	NA	NA	NA
WP_012118744.1|3645753_3646719_-	cytochrome aa3 quinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003150926.1|3647221_3647467_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_012118745.1|3647483_3649025_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_007407714.1|3649014_3650199_-	galactokinase	NA	NA	NA	NA	NA
WP_041482275.1|3650250_3650637_-	GtrA family protein	NA	NA	NA	NA	NA
WP_007614590.1|3650716_3651340_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003150917.1|3651675_3651837_+	DNA-binding anti-repressor SinI	NA	NA	NA	NA	NA
WP_007407718.1|3652053_3652734_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012118747.1|3652733_3653408_+	streptomycin biosynthesis protein StrF	NA	NA	NA	NA	NA
WP_012118748.1|3653428_3654031_-	DsbA family oxidoreductase	NA	NA	NA	NA	NA
WP_012118749.1|3654116_3655373_-	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA	NA
WP_012118750.1|3655391_3655586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012118751.1|3655786_3656461_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_012118752.1|3656457_3657276_-	hydroxyethylthiazole kinase	NA	NA	NA	NA	NA
WP_003150908.1|3657278_3658187_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007407725.1|3658293_3658680_+|holin	CidA/LrgA family holin-like protein	holin	NA	NA	NA	NA
