assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000494895.1_ASM49489v1	NC_022665	Streptococcus suis T15, complete genome	1	16641-16762	1	CRISPRCasFinder	no	cas3	cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	Unclear	GAGTTGTCTCTTGAGGGACTAGTTAACAGAG	31	0	0	NA	NA	NA	1	1	Unclear	cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	NA|38aa|up_5|NC_022665.1_10411_10525_+,NA	NA|190aa|up_9|NC_022665.1_5674_6244_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1165aa|up_8|NC_022665.1_6243_9738_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|91aa|up_7|NC_022665.1_9787_10060_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|123aa|up_6|NC_022665.1_10046_10415_+	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning]	NA|38aa|up_5|NC_022665.1_10411_10525_+	NA	NA|427aa|up_4|NC_022665.1_10537_11818_+	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|423aa|up_3|NC_022665.1_11818_13087_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|181aa|up_2|NC_022665.1_13094_13637_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|658aa|up_1|NC_022665.1_13658_15632_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|157aa|up_0|NC_022665.1_15969_16440_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|279aa|down_0|NC_022665.1_23564_24401_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|172aa|down_1|NC_022665.1_24390_24906_+	pfam04093, MreD, rod shape-determining protein MreD	NA|419aa|down_2|NC_022665.1_24990_26247_+	COG3883, COG3883, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_3|NC_022665.1_26349_27318_+	PRK02269, PRK02269, ribose-phosphate diphosphokinase	NA|393aa|down_4|NC_022665.1_27404_28583_+	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase	NA|261aa|down_5|NC_022665.1_28569_29352_+	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|336aa|down_6|NC_022665.1_29348_30356_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|83aa|down_7|NC_022665.1_30348_30597_+	PRK12449, PRK12449, acyl carrier protein; Provisional	NA|236aa|down_8|NC_022665.1_30714_31422_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|1240aa|down_9|NC_022665.1_31434_35154_+	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II
GCF_000494895.1_ASM49489v1	NC_022665	Streptococcus suis T15, complete genome	2	87003-87122	2	CRISPRCasFinder	no		cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	Orphan	GAGTTGTCTCTTGAGGGACTAGTTAACAGAG	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	NA,NA	NA|437aa|up_9|NC_022665.1_80253_81564_+	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|214aa|up_8|NC_022665.1_81657_82299_+	PRK00279, adk, adenylate kinase; Reviewed	NA|73aa|up_7|NC_022665.1_82420_82639_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|39aa|up_6|NC_022665.1_82663_82780_+	pfam00444, Ribosomal_L36, Ribosomal protein L36	NA|122aa|up_5|NC_022665.1_82799_83165_+	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|128aa|up_4|NC_022665.1_83182_83566_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|313aa|up_3|NC_022665.1_83610_84549_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|129aa|up_2|NC_022665.1_84563_84950_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|303aa|up_1|NC_022665.1_85215_86124_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|157aa|up_0|NC_022665.1_86330_86801_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|92aa|down_0|NC_022665.1_94333_94609_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|148aa|down_1|NC_022665.1_95057_95501_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|235aa|down_2|NC_022665.1_95501_96206_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|271aa|down_3|NC_022665.1_96198_97011_+	pfam00950, ABC-3, ABC 3 transport family	NA|504aa|down_4|NC_022665.1_97020_98532_+	cd01017, AdcA, Metal binding protein AdcA	NA|163aa|down_5|NC_022665.1_98617_99106_+	TIGR02698, Uncharacterized_16	NA|70aa|down_6|NC_022665.1_99273_99483_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|125aa|down_7|NC_022665.1_99727_100102_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|261aa|down_8|NC_022665.1_100155_100938_-	COG3548, COG3548, Predicted integral membrane protein [Function unknown]	NA|419aa|down_9|NC_022665.1_100941_102198_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated
GCF_000494895.1_ASM49489v1	NC_022665	Streptococcus suis T15, complete genome	3	429597-429716	3	CRISPRCasFinder	no		cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	Orphan	GAGTTGTCTCTTGAGGGACTAGTTAACAGAG	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	NA,NA	NA|232aa|up_9|NC_022665.1_421063_421759_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|339aa|up_8|NC_022665.1_421755_422772_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|214aa|up_7|NC_022665.1_422743_423385_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|467aa|up_6|NC_022665.1_423434_424835_+	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|124aa|up_5|NC_022665.1_424836_425208_+	PRK07252, PRK07252, S1 RNA-binding domain-containing protein	NA|309aa|up_4|NC_022665.1_425233_426160_-	TIGR01136, Cysteine_synthase, cysteine synthase	NA|213aa|up_3|NC_022665.1_426249_426888_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|431aa|up_2|NC_022665.1_426938_428231_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|222aa|up_1|NC_022665.1_428223_428889_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|181aa|up_0|NC_022665.1_428965_429508_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|451aa|down_0|NC_022665.1_436361_437714_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|259aa|down_1|NC_022665.1_437751_438528_+	PRK14135, recX, recombination regulator RecX; Provisional	NA|178aa|down_2|NC_022665.1_438603_439137_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|106aa|down_3|NC_022665.1_439194_439512_+	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960)	NA|244aa|down_4|NC_022665.1_439611_440343_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|237aa|down_5|NC_022665.1_440481_441192_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|591aa|down_6|NC_022665.1_441398_443171_+	pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35	NA|162aa|down_7|NC_022665.1_443224_443710_+	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|300aa|down_8|NC_022665.1_443751_444651_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|273aa|down_9|NC_022665.1_444637_445456_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component
GCF_000494895.1_ASM49489v1	NC_022665	Streptococcus suis T15, complete genome	4	1137974-1138057	4	CRISPRCasFinder	no		cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	Orphan	AGCTTGTAGGGCGTGTTCAATTCCTTT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	NA|250aa|up_8|NC_022665.1_1130461_1131211_-,NA|58aa|down_1|NC_022665.1_1138756_1138930_-,NA|58aa|down_7|NC_022665.1_1145052_1145226_-	NA|118aa|up_9|NC_022665.1_1130086_1130440_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|250aa|up_8|NC_022665.1_1130461_1131211_-	NA	NA|253aa|up_7|NC_022665.1_1131227_1131986_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|200aa|up_6|NC_022665.1_1132086_1132686_-	pfam13702, Lysozyme_like, Lysozyme-like	NA|325aa|up_5|NC_022665.1_1132686_1133661_-	pfam04245, NA37, 37-kD nucleoid-associated bacterial protein	NA|420aa|up_4|NC_022665.1_1133660_1134920_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|144aa|up_3|NC_022665.1_1134943_1135375_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|201aa|up_2|NC_022665.1_1135371_1135974_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|278aa|up_1|NC_022665.1_1135966_1136800_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|360aa|up_0|NC_022665.1_1136799_1137879_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|194aa|down_0|NC_022665.1_1138158_1138740_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|58aa|down_1|NC_022665.1_1138756_1138930_-	NA	NA|61aa|down_2|NC_022665.1_1140565_1140748_+	PRK02289, PRK02289, 4-oxalocrotonate tautomerase; Provisional	NA|611aa|down_3|NC_022665.1_1140797_1142630_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|138aa|down_4|NC_022665.1_1142725_1143139_-	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|196aa|down_5|NC_022665.1_1143161_1143749_-	PRK00454, engB, GTP-binding protein YsxC; Reviewed	NA|409aa|down_6|NC_022665.1_1143804_1145031_-	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|58aa|down_7|NC_022665.1_1145052_1145226_-	NA	NA|171aa|down_8|NC_022665.1_1145228_1145741_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|280aa|down_9|NC_022665.1_1146026_1146866_-	PRK01827, thyA, thymidylate synthase; Reviewed
GCF_000494895.1_ASM49489v1	NC_022665	Streptococcus suis T15, complete genome	5	1661066-1661150	5	CRISPRCasFinder	no		cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	Orphan	AACCTCCCAGAGTCACTCCCCTGACTCT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,PD-DExK,DinG,csa3,WYL,DEDDh	NA|76aa|up_0|NC_022665.1_1660181_1660409_+,NA|112aa|down_2|NC_022665.1_1662880_1663216_-,NA|113aa|down_3|NC_022665.1_1663219_1663558_-,NA|71aa|down_4|NC_022665.1_1663563_1663776_-,NA|87aa|down_9|NC_022665.1_1671414_1671675_-	NA|180aa|up_9|NC_022665.1_1650021_1650561_-	pfam10400, Vir_act_alpha_C, Virulence activator alpha C-term	NA|210aa|up_8|NC_022665.1_1650562_1651192_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|329aa|up_7|NC_022665.1_1651274_1652261_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|361aa|up_6|NC_022665.1_1652250_1653333_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|128aa|up_5|NC_022665.1_1655089_1655473_-	cd16358, GlxI_Ni, Glyoxalase I that uses Ni(++) as cofactor	NA|231aa|up_4|NC_022665.1_1655578_1656271_-	PRK14117, gpmA, phosphoglyceromutase; Provisional	NA|395aa|up_3|NC_022665.1_1656496_1657681_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|385aa|up_2|NC_022665.1_1657709_1658864_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|429aa|up_1|NC_022665.1_1658925_1660212_+	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|76aa|up_0|NC_022665.1_1660181_1660409_+	NA	NA|240aa|down_0|NC_022665.1_1661816_1662536_-	pfam08460, SH3_5, Bacterial SH3 domain	NA|117aa|down_1|NC_022665.1_1662519_1662870_-	pfam09682, Phage_holin_6_1, Bacteriophage holin of superfamily 6 (Holin_LLH)	NA|112aa|down_2|NC_022665.1_1662880_1663216_-	NA	NA|113aa|down_3|NC_022665.1_1663219_1663558_-	NA	NA|71aa|down_4|NC_022665.1_1663563_1663776_-	NA	NA|1400aa|down_5|NC_022665.1_1663784_1667984_-	COG4926, PblB, Phage-related protein [Function unknown]	NA|232aa|down_6|NC_022665.1_1667980_1668676_-	COG4722, COG4722, Phage-related protein [Function unknown]	NA|784aa|down_7|NC_022665.1_1668675_1671027_-	COG5412, COG5412, Phage-related protein [Function unknown]	NA|128aa|down_8|NC_022665.1_1671016_1671400_-	pfam17318, DUF5361, Family of unknown function (DUF5361)	NA|87aa|down_9|NC_022665.1_1671414_1671675_-	NA
