assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000504105.1_ASM50410v1	NC_022795	Pseudothermotoga hypogea DSM 11164 = NBRC 106472, complete genome	1	263259-264346	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,DEDDh,cas3,cas5,cas7,cas8b1,cas4,csa3,Cas14b_CAS-V-F,cas14k	Type III-B,Type III-A,Type III-D,Type III-C	GTTTCCATCCCTCATAGGAGCCTTCTAAAC,GTTTCCATCCCTCATAGGAGCCTTCTAAAC,GTTTCCATCCCTCATAGGAGCCTTCTAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	15,14,14	15	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,DEDDh,cas3,cas5,cas7,cas8b1,cas4,csa3,Cas14b_CAS-V-F,cas14k	NA|82aa|up_4|NC_022795.1_256002_256248_+,NA|266aa|down_1|NC_022795.1_266045_266843_-,NA|140aa|down_3|NC_022795.1_267534_267954_-,cas6|144aa|down_7|NC_022795.1_269360_269792_-	NA|593aa|up_9|NC_022795.1_247624_249403_+	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism]	NA|610aa|up_8|NC_022795.1_249419_251249_+	pfam14871, GHL6, Hypothetical glycosyl hydrolase 6	NA|684aa|up_7|NC_022795.1_251302_253354_-	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|641aa|up_6|NC_022795.1_253378_255301_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|181aa|up_5|NC_022795.1_255282_255825_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|82aa|up_4|NC_022795.1_256002_256248_+	NA	NA|113aa|up_3|NC_022795.1_256244_256583_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|782aa|up_2|NC_022795.1_258313_260659_+	PRK05261, PRK05261, phosphoketolase	NA|468aa|up_1|NC_022795.1_260705_262109_-	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|305aa|up_0|NC_022795.1_262138_263053_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	csx1|476aa|down_0|NC_022795.1_264621_266049_-	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|266aa|down_1|NC_022795.1_266045_266843_-	NA	NA|229aa|down_2|NC_022795.1_266870_267557_-	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|140aa|down_3|NC_022795.1_267534_267954_-	NA	cas2|88aa|down_4|NC_022795.1_268065_268329_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas2|91aa|down_5|NC_022795.1_268325_268598_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|251aa|down_6|NC_022795.1_268611_269364_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas6|144aa|down_7|NC_022795.1_269360_269792_-	NA	csm5gr7|387aa|down_8|NC_022795.1_269986_271147_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|320aa|down_9|NC_022795.1_271136_272096_-	TIGR01903, Hypothetical_protein
GCF_000504105.1_ASM50410v1	NC_022795	Pseudothermotoga hypogea DSM 11164 = NBRC 106472, complete genome	2	278670-279551	2,2,2	CRT,PILER-CR,CRISPRCasFinder	no	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,DEDDh	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,DEDDh,cas3,cas5,cas7,cas8b1,cas4,csa3,Cas14b_CAS-V-F,cas14k	Type III-B,Type III-C,Type III-A,Type III-D, Type III-B?	GTTTCCATCCCTCATAGGACCTCTCTAAAC,GTTTCCATCCCTCATAGGACCTCTCTAAAC,GTTTCCATCCCTCATAGGACCTCTCTAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	12,11,11	12	TypeIII-B,TypeIII-C,TypeIII-A,TypeIII-D,TypeIII-B?	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,DEDDh,cas3,cas5,cas7,cas8b1,cas4,csa3,Cas14b_CAS-V-F,cas14k	cas6|144aa|up_7|NC_022795.1_269360_269792_-,NA|53aa|down_0|NC_022795.1_280546_280705_+,NA|104aa|down_8|NC_022795.1_289336_289648_-,NA|132aa|down_9|NC_022795.1_289663_290059_-	cas2|91aa|up_9|NC_022795.1_268325_268598_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas6|251aa|up_8|NC_022795.1_268611_269364_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas6|144aa|up_7|NC_022795.1_269360_269792_-	NA	csm5gr7|387aa|up_6|NC_022795.1_269986_271147_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|320aa|up_5|NC_022795.1_271136_272096_-	TIGR01903, Hypothetical_protein	csm3gr7|264aa|up_4|NC_022795.1_272111_272903_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|162aa|up_3|NC_022795.1_272899_273385_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|815aa|up_2|NC_022795.1_273399_275844_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas1|330aa|up_1|NC_022795.1_275857_276847_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	NA|468aa|up_0|NC_022795.1_276887_278291_-	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain	NA|53aa|down_0|NC_022795.1_280546_280705_+	NA	cmr6gr7|254aa|down_1|NC_022795.1_280830_281592_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|113aa|down_2|NC_022795.1_281598_281937_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|290aa|down_3|NC_022795.1_281917_282787_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|345aa|down_4|NC_022795.1_282793_283828_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|797aa|down_5|NC_022795.1_283824_286215_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|462aa|down_6|NC_022795.1_286211_287597_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csx1|467aa|down_7|NC_022795.1_287653_289054_-	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|104aa|down_8|NC_022795.1_289336_289648_-	NA	NA|132aa|down_9|NC_022795.1_289663_290059_-	NA
GCF_000504105.1_ASM50410v1	NC_022795	Pseudothermotoga hypogea DSM 11164 = NBRC 106472, complete genome	3	340779-345855	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,DEDDh,cas3,cas5,cas7,cas8b1,cas4,csa3,Cas14b_CAS-V-F,cas14k	Type I-B	GTTTCCATTCCTCATAGATTCGATTGAAC,GTTTCCATTCCTCATAGATTCGATTGAAC,GTTTCCATTCCTCATAGATTCGATTGAAC	29,29,29	0	0	NA	NA	NA:NA:NA	77,77,77	77	TypeI-B	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,DEDDh,cas3,cas5,cas7,cas8b1,cas4,csa3,Cas14b_CAS-V-F,cas14k	NA,NA	NA|92aa|up_9|NC_022795.1_331533_331809_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|134aa|up_8|NC_022795.1_331816_332218_+	pfam01894, UPF0047, Uncharacterized protein family UPF0047	NA|380aa|up_7|NC_022795.1_332193_333333_-	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase	NA|319aa|up_6|NC_022795.1_333329_334286_-	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|139aa|up_5|NC_022795.1_334282_334699_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|572aa|up_4|NC_022795.1_334704_336420_-	cd14486, 3D_domain, 3D domain, named for 3 conserved aspartate residues, is found in mltA-like lytic transglycosylases and numerous other contexts	NA|219aa|up_3|NC_022795.1_336416_337073_-	pfam09986, DUF2225, Uncharacterized protein conserved in bacteria (DUF2225)	NA|294aa|up_2|NC_022795.1_337116_337998_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|575aa|up_1|NC_022795.1_338001_339726_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|180aa|up_0|NC_022795.1_340044_340584_+	pfam03961, FapA, Flagellar Assembly Protein A	cas3|746aa|down_0|NC_022795.1_346289_348527_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|233aa|down_1|NC_022795.1_348511_349210_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|295aa|down_2|NC_022795.1_349206_350091_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|578aa|down_3|NC_022795.1_350080_351814_-	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas2|88aa|down_4|NC_022795.1_351829_352093_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|328aa|down_5|NC_022795.1_352166_353150_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|163aa|down_6|NC_022795.1_353159_353648_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas6|261aa|down_7|NC_022795.1_353656_354439_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|353aa|down_8|NC_022795.1_354797_355856_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|340aa|down_9|NC_022795.1_355857_356877_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region
GCF_000504105.1_ASM50410v1	NC_022795	Pseudothermotoga hypogea DSM 11164 = NBRC 106472, complete genome	4	439364-441308	4,4,4	PILER-CR,CRISPRCasFinder,CRT	no	Cas14b_CAS-V-F,cas6,cas7,cas5,cas3,cas4,cas1,cas2,cas14k	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,DEDDh,cas3,cas5,cas7,cas8b1,cas4,csa3,Cas14b_CAS-V-F,cas14k	Unclear	GTTTGATCTGAACTATGTGGGATGTGAAC,GTTTGATCTGAACTATGTGGGATGTGAAC,GTTTGATCTGAACTATGTGGGATGTGAAC	29,29,29	0	0	NA	NA	NA:NA:NA	28,29,29	29	TypeV	csx1,cas2,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cmr1gr7,DEDDh,cas3,cas5,cas7,cas8b1,cas4,csa3,Cas14b_CAS-V-F,cas14k	NA|185aa|up_6|NC_022795.1_432342_432897_+,NA|86aa|down_0|NC_022795.1_441908_442166_+,NA|93aa|down_8|NC_022795.1_451547_451826_-,NA|50aa|down_9|NC_022795.1_451941_452091_+	NA|191aa|up_9|NC_022795.1_429408_429981_-	cd17517, RMtype1_S_EcoKI_StySPI-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR),similar to Escherichia coli str	cas6|273aa|up_8|NC_022795.1_430374_431193_+	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|384aa|up_7|NC_022795.1_431194_432346_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	NA|185aa|up_6|NC_022795.1_432342_432897_+	NA	cas7|385aa|up_5|NC_022795.1_432880_434035_+	pfam01905, DevR, CRISPR-associated negative auto-regulator DevR/Csa2	cas5|268aa|up_4|NC_022795.1_434052_434856_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|835aa|up_3|NC_022795.1_434857_437362_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|171aa|up_2|NC_022795.1_437381_437894_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|328aa|up_1|NC_022795.1_437900_438884_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|89aa|up_0|NC_022795.1_438883_439150_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|86aa|down_0|NC_022795.1_441908_442166_+	NA	NA|570aa|down_1|NC_022795.1_442462_444172_+	COG0579, COG0579, Predicted dehydrogenase [General function prediction only]	NA|551aa|down_2|NC_022795.1_444164_445817_+	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form	NA|519aa|down_3|NC_022795.1_445791_447348_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|568aa|down_4|NC_022795.1_447358_449062_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|239aa|down_5|NC_022795.1_449077_449794_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|197aa|down_6|NC_022795.1_449812_450403_+	pfam06283, ThuA, Trehalose utilisation	NA|353aa|down_7|NC_022795.1_450421_451480_+	pfam11175, DUF2961, Protein of unknown function (DUF2961)	NA|93aa|down_8|NC_022795.1_451547_451826_-	NA	NA|50aa|down_9|NC_022795.1_451941_452091_+	NA
