The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007045	Rhizobium leguminosarum bv. trifolii WSM1689 chromosome, complete genome	4854518	1336405	1345562	4854518		Enterobacteria_phage(28.57%)	9	NA	NA
WP_025394022.1|1336405_1337704_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.5	9.8e-99
WP_003547190.1|1337713_1338190_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_025394023.1|1338193_1339531_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	39.4	4.3e-33
WP_025394024.1|1339530_1340142_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	34.9	3.4e-17
WP_025394025.1|1340159_1341029_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.7	2.6e-95
WP_025394026.1|1341039_1341927_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_025394027.1|1341929_1342985_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	52.4	9.8e-97
WP_025394028.1|1342991_1343570_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	44.9	2.1e-32
WP_025394029.1|1343594_1345562_-	hypothetical protein	NA	F2Y0P4	Organic_Lake_phycodnavirus	36.4	3.3e-05
>prophage 2
NZ_CP007045	Rhizobium leguminosarum bv. trifolii WSM1689 chromosome, complete genome	4854518	1411570	1422328	4854518	protease	Bacillus_phage(16.67%)	6	NA	NA
WP_025394084.1|1411570_1412986_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.1	2.0e-12
WP_017959926.1|1413260_1413896_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	59.2	9.5e-63
WP_025394085.1|1414192_1415470_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.6	7.9e-133
WP_025394086.1|1415874_1418292_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	49.2	1.2e-203
WP_003547346.1|1418498_1418774_+	HU family DNA-binding protein	NA	A0A172Q061	Acinetobacter_phage	34.1	7.1e-07
WP_025394087.1|1420117_1422328_+	esterase-like activity of phytase family protein	NA	E3SJA5	Synechococcus_phage	40.8	1.1e-78
>prophage 3
NZ_CP007045	Rhizobium leguminosarum bv. trifolii WSM1689 chromosome, complete genome	4854518	1619175	1692513	4854518	protease,capsid,portal,tRNA,head,integrase,terminase,tail	Rhizobium_phage(33.33%)	79	1637062:1637077	1662694:1662709
WP_025394223.1|1619175_1619913_-|tRNA	alanyl-tRNA editing protein	tRNA	NA	NA	NA	NA
WP_025394224.1|1619919_1620957_-	cysteine synthase A	NA	NA	NA	NA	NA
WP_025394225.1|1621183_1621843_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_025394226.1|1621941_1622775_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_025394227.1|1622775_1624035_-	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	34.2	2.2e-42
WP_025394228.1|1624597_1624924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025394229.1|1625134_1625452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394230.1|1625504_1625990_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_025394231.1|1626126_1626546_+	DUF2000 domain-containing protein	NA	NA	NA	NA	NA
WP_025394232.1|1626665_1627343_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_025394233.1|1627380_1630038_-	nitrate reductase	NA	NA	NA	NA	NA
WP_018073330.1|1630038_1630374_-	nitrite reductase small subunit NirD	NA	NA	NA	NA	NA
WP_025394234.1|1630378_1632829_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_025394235.1|1632847_1634116_-	NarK/NasA family nitrate transporter	NA	NA	NA	NA	NA
WP_025394236.1|1634597_1635878_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_018241751.1|1635912_1636500_-	ANTAR domain-containing response regulator	NA	NA	NA	NA	NA
WP_025394237.1|1636832_1638665_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
1637062:1637077	attL	GCGCGCCGCTCAGCCT	NA	NA	NA	NA
WP_025394238.1|1638677_1639676_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_080685794.1|1639759_1639939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394239.1|1639962_1640622_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_038614065.1|1640819_1641776_+	lytic transglycosylase domain-containing protein	NA	A0A0A0P1R1	Enterobacteria_phage	35.6	6.5e-07
WP_025394240.1|1641867_1642824_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_025394241.1|1642908_1644174_-	glycerate kinase	NA	NA	NA	NA	NA
WP_025394242.1|1644310_1645708_-	dipeptidase	NA	NA	NA	NA	NA
WP_025394243.1|1645725_1646784_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	52.7	5.7e-20
WP_025394244.1|1646791_1647583_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_025394245.1|1647579_1648404_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_025394246.1|1648536_1649577_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_025394247.1|1651776_1652076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394248.1|1652118_1653210_-	PHB depolymerase family esterase	NA	NA	NA	NA	NA
WP_025394249.1|1653552_1653960_+	low affinity iron permease family protein	NA	Q19XG2	Mycobacterium_phage	40.5	3.3e-08
WP_025394250.1|1654060_1654414_-	low affinity iron permease family protein	NA	NA	NA	NA	NA
WP_025394251.1|1654561_1656679_-	catalase	NA	A0A2K9L572	Tupanvirus	49.5	7.6e-141
WP_025394252.1|1656874_1657774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025394253.1|1658056_1658326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025394254.1|1658322_1658559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025394255.1|1659255_1659459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025394256.1|1659707_1659962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025394257.1|1660311_1661496_+|integrase	site-specific integrase	integrase	A0A077KET4	Ralstonia_phage	44.1	6.1e-79
WP_025394258.1|1661725_1661938_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_025394259.1|1662029_1662767_+	hypothetical protein	NA	NA	NA	NA	NA
1662694:1662709	attR	AGGCTGAGCGGCGCGC	NA	NA	NA	NA
WP_025394260.1|1662763_1664107_+	AAA family ATPase	NA	Q9JMN6	Wolbachia_phage	41.0	2.7e-75
WP_025394261.1|1664363_1664765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394262.1|1664764_1665928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394263.1|1666070_1666760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_167334094.1|1666892_1667054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025394264.1|1667164_1667347_-	DUF3606 domain-containing protein	NA	NA	NA	NA	NA
WP_038614072.1|1667378_1667693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394265.1|1667806_1668193_+	hypothetical protein	NA	A0A0U2C0X7	Paracoccus_phage	38.4	6.7e-11
WP_025394266.1|1668227_1670057_+|terminase	terminase	terminase	A0A0U2C138	Paracoccus_phage	49.0	8.6e-157
WP_025394267.1|1670056_1671310_+|portal	phage portal protein	portal	B4UTP1	Rhizobium_phage	77.3	2.9e-172
WP_025394268.1|1671306_1671921_+|head,protease	HK97 family phage prohead protease	head,protease	B4UTP2	Rhizobium_phage	57.9	1.6e-43
WP_038614075.1|1672018_1673272_+|capsid	phage major capsid protein	capsid	B4UTP3	Rhizobium_phage	62.1	2.7e-138
WP_025394271.1|1673322_1673535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394272.1|1673497_1674037_+|head,tail	phage head-tail connector protein	head,tail	B4UTP7	Rhizobium_phage	58.9	6.8e-54
WP_025394273.1|1674054_1674465_+	hypothetical protein	NA	B4UTP8	Rhizobium_phage	51.8	9.2e-27
WP_025394274.1|1674628_1674985_+|head,tail	head-tail adaptor protein	head,tail	B4UTP9	Rhizobium_phage	35.3	3.6e-11
WP_025394275.1|1674984_1675476_+	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_025394276.1|1675479_1675890_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_025394277.1|1675929_1676364_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_025394278.1|1676387_1676738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394279.1|1676758_1676947_+|tail	phage tail assembly chaperone	tail	NA	NA	NA	NA
WP_080685797.1|1676943_1677420_-	YbjQ family protein	NA	M4STD1	Rhodobacter_phage	39.4	1.8e-21
WP_025394281.1|1677477_1680648_+|tail	phage tail length tape measure family protein	tail	A0A076G7H2	Sinorhizobium_phage	33.0	5.2e-61
WP_025394282.1|1680644_1680995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394283.1|1680991_1681495_+	DUF1833 family protein	NA	A0A1B0T6D7	Thiobacimonas_phage	33.9	4.5e-15
WP_025394284.1|1681494_1681965_+	C40 family peptidase	NA	G8GWF9	Rhodobacter_phage	35.3	1.9e-15
WP_025394285.1|1681879_1685521_+	hypothetical protein	NA	G8GWG0	Rhodobacter_phage	30.4	7.5e-96
WP_025394286.1|1685517_1686660_+	hypothetical protein	NA	L7TMF7	Rhizobium_phage	54.4	1.9e-74
WP_025394287.1|1686659_1687016_+	hypothetical protein	NA	A0A0F6WBI7	Sinorhizobium_phage	53.2	1.3e-13
WP_038614080.1|1687012_1687525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394289.1|1687553_1687808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038614812.1|1687839_1688277_+	lysozyme	NA	A0A0K1Y6F2	Rhodobacter_phage	43.7	2.6e-27
WP_025394291.1|1688273_1688645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025394293.1|1688888_1689227_+	hypothetical protein	NA	B4UTS1	Rhizobium_phage	78.9	2.6e-43
WP_025394294.1|1689261_1689525_+	hypothetical protein	NA	A0A1J0GUZ4	Halomonas_phage	40.9	9.8e-06
WP_155256821.1|1689730_1690771_+	hypothetical protein	NA	A0A068CDE5	Rhizobium_phage	75.7	4.5e-155
WP_025394296.1|1691274_1692036_-	Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_025394297.1|1692138_1692513_-	thermonuclease family protein	NA	G8DH70	Emiliania_huxleyi_virus	49.2	5.1e-24
>prophage 4
NZ_CP007045	Rhizobium leguminosarum bv. trifolii WSM1689 chromosome, complete genome	4854518	1722558	1735855	4854518	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_025394331.1|1722558_1723572_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.8e-24
WP_025394332.1|1723590_1724448_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	38.1	9.6e-34
WP_025394333.1|1724444_1725161_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.8	1.7e-39
WP_003538990.1|1725344_1725536_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	8.9e-09
WP_025394334.1|1725587_1726199_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_025394335.1|1726195_1727023_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.5	8.0e-54
WP_025394336.1|1727123_1728407_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.1	9.1e-97
WP_025394337.1|1728411_1729185_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	29.5	5.2e-23
WP_025394338.1|1729181_1729835_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	32.9	8.4e-14
WP_025394339.1|1729973_1731575_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	29.2	8.6e-12
WP_025394340.1|1731739_1732612_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003539006.1|1732921_1733269_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.1	1.4e-12
WP_025394341.1|1733314_1735855_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	49.0	1.8e-56
>prophage 5
NZ_CP007045	Rhizobium leguminosarum bv. trifolii WSM1689 chromosome, complete genome	4854518	3952304	3962360	4854518		Mycobacterium_phage(25.0%)	9	NA	NA
WP_025396141.1|3952304_3953015_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	48.7	3.0e-49
WP_025396142.1|3953014_3953371_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_025396143.1|3953367_3954096_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	38.0	2.0e-40
WP_025396144.1|3954112_3955345_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	29.4	2.4e-14
WP_025396145.1|3955449_3956424_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	74.1	8.1e-138
WP_025396146.1|3956597_3958802_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	52.4	5.0e-212
WP_025396147.1|3958780_3959185_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	44.0	1.5e-16
WP_017968025.1|3959194_3959416_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	53.4	3.6e-17
WP_025396148.1|3960140_3962360_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	37.3	2.5e-126
